M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41717

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41717 1145 23.86 Mlig455_043898

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.325

 NLGN4Y Mlig455_043898 {REF} {Length: 2774} {Pfam: Carboxylesterase family [PF00135.30, score=322.0]; alpha/beta hydrolase fold [PF07859.15, score=24.2]} {Human: ENSG00000165246, NLGN4Y, neuroligin 4 Y-linked, [Score=205, Expect=9e-57]; ENSG00000146938, NLGN4X, neuroligin 4 X-linked, [Score=204, Expect=2e-56]; ENSG00000196338, NLGN3, neuroligin 3, [Score=199, Expect=7e-55]; ENSG00000114200, BCHE, butyrylcholinesterase, [Score=195, Expect=1e-54]} {Mouse: ENSMUSG00000063887, Nlgn1, neuroligin 1, [Score=197, Expect=4e-54]; ENSMUSG00000031302, Nlgn3, neuroligin 3, [Score=193, Expect=1e-52]} {Dmel: FBgn0032132, CG4382, [RH, Score=165, Expect=6e-44]} {Celegans: WBGene00006412, nlg-1, Neuroligin-1, [Score=172, Expect=7e-46]} {Smed: dd_Smed_v6_7946_0_1, dd_Smed_v6_7946_0_1, [RH, Score=518, Expect=2e-178]} {RNA1509_33758, RNA1509_58311, RNA1509_6459} {RNA1310_6118.1, RNA1509_33758, RNA1509_58311, RNA1509_6459} {RNA1509_33758, RNA1509_58311, RNA1509_6459, RNA815_2047.1}

Cumulative graph for MligTC455_41717

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.537 4.784 0.53970 1.00000
RegionR2 0.11 4.784 0.77024 1.00000
RegionR3 0.18 4.784 0.55630 1.00000
RegionR4 -0.385 4.784 0.28878 0.59894
RegionR5 -0.54 4.784 0.07802 0.25737
RegionR6 0.065 4.784 0.83724 1.00000
RegionR7 0.021 4.784 0.96068 1.00000
RegionR8 1.086 4.784 0.01970 0.27250

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.034 4.784 0.44423 1.00000
RegenerationR2 0.028 4.784 0.92944 1.00000
RegenerationR3 0.165 4.784 0.62468 0.91790
RegenerationR4 0.291 4.784 0.40939 0.81979
RegenerationR5 0.431 4.784 0.19320 0.62452
RegenerationR6 0.155 4.784 0.65620 0.90124
RegenerationBL 0.04 4.784 0.91547 1.00000
RegenerationTP -0.419 4.784 0.32433 0.76857


Genes with expression patterns similar to MligTC455_41717

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41717 1145 23.86 Mlig455_043898

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.325

 NLGN4Y 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_043898 {REF} {Length: 2774} {Pfam: Carboxylesterase family [PF00135.30, score=322.0]; alpha/beta hydrolase fold [PF07859.15, score=24.2]} {Human: ENSG00000165246, NLGN4Y, neuroligin 4 Y-linked, [Score=205, Expect=9e-57]; ENSG00000146938, NLGN4X, neuroligin 4 X-linked, [Score=204, Expect=2e-56]; ENSG00000196338, NLGN3, neuroligin 3, [Score=199, Expect=7e-55]; ENSG00000114200, BCHE, butyrylcholinesterase, [Score=195, Expect=1e-54]} {Mouse: ENSMUSG00000063887, Nlgn1, neuroligin 1, [Score=197, Expect=4e-54]; ENSMUSG00000031302, Nlgn3, neuroligin 3, [Score=193, Expect=1e-52]} {Dmel: FBgn0032132, CG4382, [RH, Score=165, Expect=6e-44]} {Celegans: WBGene00006412, nlg-1, Neuroligin-1, [Score=172, Expect=7e-46]} {Smed: dd_Smed_v6_7946_0_1, dd_Smed_v6_7946_0_1, [RH, Score=518, Expect=2e-178]} {RNA1509_33758, RNA1509_58311, RNA1509_6459} {RNA1310_6118.1, RNA1509_33758, RNA1509_58311, RNA1509_6459} {RNA1509_33758, RNA1509_58311, RNA1509_6459, RNA815_2047.1}
2. MligTC455_24498 492 10.25 Mlig455_018869

Neo: -

Age: -

 ZYG11B 0.959 - - - 0.959 - - Mlig455_018869 {REF} {Length: 5141} {TRANSSPLICED} {Human: ENSG00000162378, ZYG11B, zyg-11 family member B, cell cycle regulator, [RH, Score=315, Expect=5e-94]} {Mouse: ENSMUSG00000034636, Zyg11b, zyg-ll family member B, cell cycle regulator, [RH, Score=313, Expect=3e-93]} {Dmel: FBgn0043458, CG12084, [RH, Score=124, Expect=9e-29]} {Celegans: WBGene00006996, zyg-11, Early embryogenesis protein zyg-11, [RH, Score=162, Expect=6e-41]} {Smed: dd_Smed_v6_7636_0_3, dd_Smed_v6_7636_0_3, [RH, Score=210, Expect=7e-57]} {RNA1509_16072, RNA1509_53676, RNA1509_7354} {RNA1310_3783.1, RNA1509_16072, RNA1509_53676} {RNA1509_16072, RNA1509_53676, RNA815_4913}
3. MligTC455_54162 245 5.09 Mlig455_032599

Neo: -

Age: -

 UPB1 0.956 - - - 0.956 - - Mlig455_032599 {REF} {Length: 1549} {Pfam: Carbon-nitrogen hydrolase [PF00795.24, score=194.9]} {Human: ENSG00000100024, UPB1, beta-ureidopropionase 1, [RH, Score=518, Expect=0.0]} {Mouse: ENSMUSG00000033427, Upb1, ureidopropionase, beta, [RH, Score=511, Expect=0.0]} {Dmel: FBgn0037513, pyd3, [RH, Score=525, Expect=0.0]} {Celegans: WBGene00017440, upb-1, UreidoPropionase Beta, [RH, Score=484, Expect=7e-172]} {Smed: dd_Smed_v6_1584_0_1, dd_Smed_v6_1584_0_1, [RH, Score=464, Expect=6e-164]} {RNA1509_20845} {RNA1310_21817} {RNA815_9134.1}
4. MligTC455_51519 1678 34.95 Mlig455_029240

Neo: -

Age: -

 CREBBP 0.955 - - - 0.955 - - Mlig455_029240 {REF} {Length: 6874} {TRANSSPLICED} {Pfam: Histone acetylation protein [PF08214.13, score=213.3]; KIX domain [PF02172.18, score=106.6]; TAZ zinc finger [PF02135.18, score=78.1]; Bromodomain [PF00439.27, score=64.3]; Domain of Unknown Function (DUF902) [PF06001.15, score=55.5]; Zinc finger, ZZ type [PF00569.19, score=42.1]; KIX domain [PF16987.7, score=24.8]} {Human: ENSG00000005339, CREBBP, CREB binding protein, [RH, Score=897, Expect=0.0]; ENSG00000100393, EP300, E1A binding protein p300, [RH, Score=882, Expect=0.0]} {Mouse: ENSMUSG00000022521, Crebbp, CREB binding protein, [RH, Score=895, Expect=0.0]; ENSMUSG00000055024, Ep300, E1A binding protein p300, [RH, Score=875, Expect=0.0]} {Dmel: FBgn0261617, nej, nejire, [RH, Score=893, Expect=0.0]} {Celegans: WBGene00000366, cbp-1, [RH, Score=853, Expect=0.0]} {Smed: dd_Smed_v6_7719_0_1, dd_Smed_v6_7719_0_1, [RH, Score=937, Expect=0.0]} {RNA1509_1063} {RNA1310_739.1} {RNA815_341}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA