M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41982

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41982 97 2.03 Mlig455_037203

Neo: -

Age: Up-Down-Down

 DENND1A Mlig455_037203 {REF} {Length: 4059} {TRANSSPLICED} {Pfam: DENN (AEX-3) domain [PF02141.23, score=68.9]} {Human: ENSG00000119522, DENND1A, DENN domain containing 1A, [Score=96.3, Expect=6e-20]; ENSG00000213047, DENND1B, DENN domain containing 1B, [Score=91.7, Expect=2e-19]} {Mouse: ENSMUSG00000035392, Dennd1a, DENN/MADD domain containing 1A, [Score=94.7, Expect=1e-19]; ENSMUSG00000056268, Dennd1b, DENN/MADD domain containing 1B, [Score=91.7, Expect=1e-18]} {RNA1509_22205, RNA1509_31910, RNA1509_55875} {RNA1310_6128, RNA1509_31910, RNA1509_55875} {RNA1509_31910, RNA1509_55875, RNA815_11575}

Cumulative graph for MligTC455_41982

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.259 1.955 0.42784 1.00000
RegionR2 1.317 1.955 0.28183 0.66831
RegionR3 0.197 1.955 0.78243 1.00000
RegionR4 0.959 1.955 0.41908 0.74706
RegionR5 1.253 1.955 0.12619 0.35854
RegionR6 0.471 1.955 0.64641 1.00000
RegionR7 -0.63 1.955 0.97190 1.00000
RegionR8 0.691 1.955 0.63265 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.262 1.955 0.99984 1.00000
RegenerationR2 -0.231 1.955 0.75520 0.97471
RegenerationR3 0.48 1.955 0.58038 0.89892
RegenerationR4 -0.902 1.955 0.31803 0.75655
RegenerationR5 0.082 1.955 0.87722 1.00000
RegenerationR6 -0.12 1.955 0.89897 1.00000
RegenerationBL 3.123 1.955 0.00046 0.01338
RegenerationTP 0.937 1.955 0.46856 0.87986


Genes with expression patterns similar to MligTC455_41982

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41982 97 2.03 Mlig455_037203

Neo: -

Age: Up-Down-Down

 DENND1A 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_037203 {REF} {Length: 4059} {TRANSSPLICED} {Pfam: DENN (AEX-3) domain [PF02141.23, score=68.9]} {Human: ENSG00000119522, DENND1A, DENN domain containing 1A, [Score=96.3, Expect=6e-20]; ENSG00000213047, DENND1B, DENN domain containing 1B, [Score=91.7, Expect=2e-19]} {Mouse: ENSMUSG00000035392, Dennd1a, DENN/MADD domain containing 1A, [Score=94.7, Expect=1e-19]; ENSMUSG00000056268, Dennd1b, DENN/MADD domain containing 1B, [Score=91.7, Expect=1e-18]} {RNA1509_22205, RNA1509_31910, RNA1509_55875} {RNA1310_6128, RNA1509_31910, RNA1509_55875} {RNA1509_31910, RNA1509_55875, RNA815_11575}
2. MligTC455_16040 159 3.32 Mlig455_029062

Neo: -

Age: -

Region-enriched R7: 3.730/0.00014
Region-enriched R6: 2.603/0.00500

 1.717 - - - 0.749 0.968 - Mlig455_029062 {REF} {Length: 1051} {Pfam: Ets-domain [PF00178.24, score=23.5]} {RNA1310_48212} {RNA815_36794}
3. MligTC455_00188 18 0.38 Mlig455_002452

Neo: -

Age: -

 1.699 - - - - 0.953 0.746 Mlig455_002452 {REF} {Length: 833} {RNA1509_42115} {RNA1310_91343} {RNA815_54617}
4. MligTC455_10569 11 0.24 Mlig455_071080

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.760

 0.993 - - - - 0.993 - Mlig455_071080 {REF} {Length: 2761} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=27.9]; Glycine rich protein [PF12810.9, score=26.4]} {RNA1509_52100} {RNA1310_9595} {RNA815_2737.1}
5. MligTC455_16465 11 0.22 Mlig455_043973

Neo: -

Age: -

 0.99 - - - - 0.990 - Mlig455_043973 {REF} {Length: 367} {NoTransDecoderORF} {RNA1310_68311}
6. MligTC455_08562 8 0.17 Mlig455_007340

Neo: -

Age: -

 SCNN1B 0.988 - - - - 0.988 - Mlig455_007340 {REF} {Length: 2206} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=196.0]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=83.6, Expect=5e-16]} {Mouse: ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=61.2, Expect=3e-09]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=81.6, Expect=5e-16]} {Smed: dd_Smed_v6_34707_0_1, dd_Smed_v6_34707_0_1, [Score=117, Expect=1e-27]} {RNA1310_36738} {RNA815_32966}
7. MligTC455_16664 96 1.99 Mlig455_057676

Neo: -

Age: logFC(26M/2M)=0.322

 CCDC177 0.987 - - - - 0.987 - Mlig455_057676 {REF} {Length: 3257} {Pfam: Domain of unknown function (DUF4659) [PF15558.8, score=18.6]} {Human: ENSG00000267909, CCDC177, coiled-coil domain containing 177, [RH, Score=89.0, Expect=5e-18]} {Mouse: ENSMUSG00000062961, Ccdc177, coiled-coil domain containing 177, [RH, Score=84.7, Expect=7e-17]} {Smed: dd_Smed_v6_9816_0_1, dd_Smed_v6_9816_0_1, [RH, Score=60.1, Expect=9e-10]} {RNA1509_40763} {RNA1310_21314} {RNA815_13626}
8. MligTC455_45101 48 1.01 Mlig455_052653

Neo: Germline

Age: -

Region-enriched R4: 3.623/0.04615

 0.984 - - - - 0.984 - Mlig455_052653 {REF} {Length: 239} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_68303.1} {RNA815_35089}
9. MligTC455_05684 8 0.16 Mlig455_050049

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_050049 {REF} {Length: 894} {NoTransDecoderORF} {RNA1509_18097} {RNA1310_131002} {RNA815_14810.1}
10. MligTC455_20394 24 0.5 Mlig455_027466

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_027466 {REF} {Length: 884} {RNA1310_23417} {RNA815_54837}
11. MligTC455_20632 12 0.24 Mlig455_008126

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_008126 {REF} {Length: 996} {NoTransDecoderORF} {RNA1509_39410} {RNA1310_104480} {RNA815_5258}
12. MligTC455_18351 9 0.18 Mlig455_067384

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_067384 {REF} {Length: 1842} {NoTransDecoderORF} {RNA1509_45746} {RNA1310_92329}
13. MligTC455_39787 8 0.17 Mlig455_066856

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_066856 {REF} {Length: 238} {NoTransDecoderORF} {RNA1509_18723} {RNA1310_9198} {RNA815_36985}
14. MligTC455_20991 187 3.89 Mlig455_022250

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=6.428

Region-enriched R3: 6.761/0.00001

 MEP1B 0.98 - - - - 0.980 - Mlig455_022250 {REF} {Length: 892} {Pfam: Astacin (Peptidase family M12A) [PF01400.26, score=158.6]} {Human: ENSG00000141434, MEP1B, meprin A subunit beta, [RH, Score=130, Expect=1e-33]} {Mouse: ENSMUSG00000024313, Mep1b, meprin 1 beta, [RH, Score=132, Expect=1e-34]} {Dmel: FBgn0039069, CG6763, [RH, Score=147, Expect=3e-42]} {Celegans: WBGene00003525, nas-6, Zinc metalloproteinase nas-6, [RH, Score=143, Expect=8e-41]} {Smed: dd_Smed_v6_85_0_1, dd_Smed_v6_85_0_1, [RH, Score=131, Expect=3e-37]} {RNA1509_2621} {RNA1310_42790.1} {RNA815_21158.1}
15. MligTC455_29892 29 0.61 Mlig455_002475, Mlig455_002705, Mlig455_014199

Neo: -

Age: logFC(26M/2M)=0.833

 0.98 - - - - 0.980 -

Mlig455_002475 {REF} {Length: 1789} {TRANSSPLICED} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=19.7]} {RNA1509_34939} {RNA1310_4476.1} {RNA815_8156}

Mlig455_002705 {REF} {Length: 1210} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4371) [PF14291.8, score=18.2]} {RNA1509_34939} {RNA1310_613.2} {RNA815_16824}

Mlig455_014199 {REF} {Length: 902} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=20.7]} {RNA1509_34939} {RNA1310_4476.1} {RNA815_8156}
16. MligTC455_54052 326 6.79 Mlig455_003203

Neo: -

Age: Down-Down-Down

Region-enriched R2: 3.038/0.00157

 ETHE1 0.98 - - 0.980 - - - Mlig455_003203 {REF} {Length: 1391} {Pfam: Metallo-beta-lactamase superfamily [PF00753.29, score=52.2]} {Human: ENSG00000105755, ETHE1, ETHE1, persulfide dioxygenase, [Score=304, Expect=9e-105]} {Mouse: ENSMUSG00000064254, Ethe1, ethylmalonic encephalopathy 1, [RH, Score=306, Expect=8e-106]} {Dmel: FBgn0050022, CG30022, [RH, Score=306, Expect=1e-105]} {Celegans: WBGene00007886, ethe-1, ETHE1 (Human ETHylmalonic Encephalopathy) homolog, [RH, Score=282, Expect=9e-97]} {Smed: dd_Smed_v6_944_0_1, dd_Smed_v6_944_0_1, [RH, Score=313, Expect=5e-109]} {RNA1509_6544} {RNA1310_29246} {RNA815_15142}
17. MligTC455_18168 39 0.81 Mlig455_062580

Neo: -

Age: logFC(26M/2M)=-0.368

Regeneration-upregulated BL: 7.138

Regeneration-enriched BL: 7.138

 CCDC157 0.979 - - - - 0.979 - Mlig455_062580 {REF} {Length: 3389} {TRANSSPLICED} {Human: ENSG00000187860, CCDC157, coiled-coil domain containing 157, [RH, Score=185, Expect=1e-48]} {Mouse: ENSMUSG00000051427, Ccdc157, coiled-coil domain containing 157, [RH, Score=191, Expect=6e-51]} {Smed: dd_Smed_v6_10757_0_1, dd_Smed_v6_10757_0_1, [RH, Score=226, Expect=3e-63]} {RNA1509_20327} {RNA1310_8258, RNA1509_20327} {RNA1509_20327, RNA815_4255}
18. MligTC455_37650 11 0.23 Mlig455_058650

Neo: -

Age: -

 0.979 - - - - 0.979 - Mlig455_058650 {REF} {Length: 1727} {NoTransDecoderORF} {RNA1509_14662} {RNA1310_37734} {RNA815_42070}
19. MligTC455_12539 39 0.81 Mlig455_050346, Mlig455_050360

Neo: -

Age: -

 0.978 - - - - 0.978 -

Mlig455_050346 {REF} {Length: 1438} {Smed: dd_Smed_v6_38985_0_1, dd_Smed_v6_38985_0_1, [Score=57.0, Expect=1e-09]}

Mlig455_050360 {REF} {Length: 1447} {Smed: dd_Smed_v6_38985_0_1, dd_Smed_v6_38985_0_1, [Score=57.0, Expect=1e-09]}
20. MligTC455_12228 24 0.5 Mlig455_029966, Mlig455_051524

Neo: -

Age: -

 0.977 - - - - 0.977 -

Mlig455_029966 {REF} {Length: 240} {NoTransDecoderORF} {RNA1310_146647}

Mlig455_051524 {REF} {Length: 175} {NoTransDecoderORF}
21. MligTC455_03442 26 0.54 Mlig455_056820

Neo: -

Age: -

Regeneration-upregulated BL: 6.728

Regeneration-enriched BL: 6.728

 0.975 - - - - 0.975 - Mlig455_056820 {REF} {Length: 1054} {RNA1310_107584} {RNA815_64884}
22. MligTC455_10991 207 4.31 Mlig455_011837, Mlig455_013118

Neo: Irradiation

Age: Down-Up-Down

 EGR4 0.974 - - - - 0.974 -

Mlig455_011837 {REF} {Length: 1687} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=52.2]; Zinc-finger double domain [PF13465.8, score=47.8]; C2H2-type zinc finger [PF13894.8, score=41.0]; C2H2-type zinc-finger domain [PF13909.8, score=23.2]} {Human: ENSG00000135625, EGR4, early growth response 4, [Score=107, Expect=3e-24]; ENSG00000179388, EGR3, early growth response 3, [Score=103, Expect=6e-24]; ENSG00000120738, EGR1, early growth response 1, [Score=102, Expect=6e-23]} {Mouse: ENSMUSG00000071341, Egr4, early growth response 4, [Score=107, Expect=9e-25]; ENSMUSG00000033730, Egr3, early growth response 3, [Score=103, Expect=6e-24]; ENSMUSG00000038418, Egr1, early growth response 1, [Score=102, Expect=4e-23]} {Dmel: FBgn0013469, klu, klumpfuss, [RH, Score=130, Expect=2e-32]} {Celegans: WBGene00013970, klu-1, KLUmpfuss related, [RH, Score=133, Expect=8e-34]} {Smed: dd_Smed_v6_16277_0_1, dd_Smed_v6_16277_0_1, [Score=137, Expect=1e-36]} {RNA1509_38897} {RNA1310_16481} {RNA815_46371}

Mlig455_013118 {REF} {Length: 1946} {RNA1509_38897} {RNA1310_16481, RNA1509_38897} {RNA1509_38897, RNA815_46371}
23. MligTC455_54102 228 4.75 Mlig455_012249, Mlig455_012262, Mlig455_052497

Neo: -

Age: logFC(26M/2M)=0.459

Region-enriched R5: 3.431/0.00196

 0.974 - - - - 0.974 -

Mlig455_012249 {REF} {Length: 1454} {TRANSSPLICED} {RNA1310_29892} {RNA815_39834}

Mlig455_012262 {REF} {Length: 1597} {TRANSSPLICED} {RNA1310_29892} {RNA815_39834}

Mlig455_052497 {REF} {Length: 1723} {TRANSSPLICED} {RNA1310_29892} {RNA815_39834}
24. MligTC455_01195 22 0.47 Mlig455_036133

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_036133 {REF} {Length: 295} {NoTransDecoderORF} {RNA1509_56822} {RNA1310_22534} {RNA815_1171.1}
25. MligTC455_01488 11 0.23 Mlig455_008876, Mlig455_008977

Neo: -

Age: -

 0.972 - - - - 0.972 -

Mlig455_008876 {REF} {Length: 319} {NoTransDecoderORF}

Mlig455_008977 {REF} {Length: 318} {NoTransDecoderORF}
26. MligTC455_06187 7 0.16 Mlig455_063882

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_063882 {REF} {Length: 216} {NoTransDecoderORF} {RNA1310_16179.2} {RNA815_14698}
27. MligTC455_07073 6 0.12 Mlig455_010321

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_010321 {REF} {Length: 1488} {Smed: dd_Smed_v6_33317_0_1, dd_Smed_v6_33317_0_1, [Score=73.2, Expect=1e-16]} {RNA1509_59035} {RNA1310_5145.1} {RNA815_9565}
28. MligTC455_12217 33 0.68 Mlig455_068732

Neo: -

Age: Down-Up-Up

 0.972 - - - - 0.972 - Mlig455_068732 {REF} {Length: 3365} {Pfam: High molecular weight glutenin subunit [PF03157.15, score=22.1]} {RNA1310_29196.2} {RNA815_33399}
29. MligTC455_14028 9 0.2 Mlig455_064828

Neo: -

Age: -

 MC5R 0.972 - - - - 0.972 - Mlig455_064828 {REF} {Length: 1550} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=78.0]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=36.0]; Olfactory receptor [PF13853.8, score=29.1]} {Human: ENSG00000176136, MC5R, melanocortin 5 receptor, [Score=71.2, Expect=4e-13]; ENSG00000128271, ADORA2A, adenosine A2a receptor, [Score=70.1, Expect=2e-12]} {Mouse: ENSMUSG00000007480, Mc5r, melanocortin 5 receptor, [Score=62.8, Expect=2e-10]; ENSMUSG00000020178, Adora2a, adenosine A2a receptor, [Score=60.5, Expect=2e-09]} {Dmel: FBgn0011582, Dop1R1, Dopamine 1-like receptor 1, [Score=50.8, Expect=1e-06]} {RNA1310_48824}
30. MligTC455_16910 10 0.21 Mlig455_049235

Neo: -

Age: Down-Up-Down

 0.972 - - - - 0.972 - Mlig455_049235 {REF} {Length: 2857} {NoTransDecoderORF} {RNA1509_11508} {RNA1310_21316} {RNA815_11751}
31. MligTC455_17719 11 0.22 Mlig455_047217

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_047217 {REF} {Length: 724} {NoTransDecoderORF} {RNA1310_24567.1}
32. MligTC455_07017 17 0.35 Mlig455_038440

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_038440 {REF} {Length: 131} {NoTransDecoderORF} {RNA1310_99368}
33. MligTC455_07854 6 0.13 Mlig455_025830

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_025830 {REF} {Length: 530} {NoTransDecoderORF} {RNA1509_31725} {RNA1310_73607.2} {RNA815_19357}
34. MligTC455_10395 14 0.29 Mlig455_039470

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_039470 {REF} {Length: 682} {RNA1310_75011.1} {RNA815_47673}
35. MligTC455_36555 40 0.84 Mlig455_027790, Mlig455_063458

Neo: -

Age: -

Region-enriched R4: 7.080/0.02387

 0.971 - - - - 0.971 -

Mlig455_027790 {REF} {Length: 3034} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=20.8]} {RNA1509_20583} {RNA1310_17633} {RNA815_8151}

Mlig455_063458 {REF} {Length: 3182} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=20.8]} {RNA1509_20583} {RNA1310_17633} {RNA815_8151}
36. MligTC455_00530 6 0.12 Mlig455_070149

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_070149 {REF} {Length: 165} {NoTransDecoderORF}
37. MligTC455_30590 30 0.62 Mlig455_041007

Neo: -

Age: Down-Down-Up

 0.969 - - - - 0.969 - Mlig455_041007 {REF} {Length: 3672} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=23.5]; Mab-21 protein [PF03281.16, score=19.6]} {RNA1509_39688} {RNA1310_6142.1} {RNA815_6750.1}
38. MligTC455_03577 21 0.44 Mlig455_018916

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_018916 {REF} {Length: 741} {RNA1509_13929} {RNA1310_62638.1} {RNA815_9101.2}
39. MligTC455_10635 35 0.74 Mlig455_004317

Neo: -

Age: Up-Down-Down

 FLOT1 0.968 - - - - 0.968 - Mlig455_004317 {REF} {Length: 1135} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=55.4]} {Human: ENSG00000236271, FLOT1, flotillin 1, [Score=166, Expect=2e-52]; ENSG00000232280, FLOT1, flotillin 1, [Score=166, Expect=2e-52]; ENSG00000206379, FLOT1, flotillin 1, [Score=166, Expect=2e-52]; ENSG00000137312, FLOT1, flotillin 1, [Score=166, Expect=2e-52]; ENSG00000206480, FLOT1, flotillin 1, [Score=166, Expect=2e-52]; ENSG00000230143, FLOT1, flotillin 1, [Score=166, Expect=2e-52]} {Mouse: ENSMUSG00000059714, Flot1, flotillin 1, [Score=166, Expect=2e-52]} {Dmel: FBgn0024754, Flo1, Flotillin 1, [Score=178, Expect=1e-54]} {Smed: dd_Smed_v6_4656_0_2, dd_Smed_v6_4656_0_2, [Score=191, Expect=6e-60]} {RNA1310_37866} {RNA815_26762}
40. MligTC455_26802 18 0.38 Mlig455_027493

Neo: -

Age: -

Region-enriched R4: 5.987/0.03988

Regeneration-upregulated BL: 7.200

Regeneration-enriched BL: 7.200

 0.968 - - - - 0.968 - Mlig455_027493 {REF} {Length: 1785} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}
41. MligTC455_40988 23 0.47 Mlig455_059710

Neo: -

Age: logFC(26M/2M)=-0.303

Regeneration-upregulated BL: 7.882

Regeneration-enriched BL: 7.882

 TOGARAM1 0.966 - - - - 0.966 - Mlig455_059710 {REF} {Length: 2947} {TRANSSPLICED} {Pfam: HEAT repeats [PF13646.8, score=40.6]; Parkin co-regulated protein [PF10274.11, score=29.4]; CLASP N terminal [PF12348.10, score=28.6]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=28.2]; HEAT repeat [PF02985.24, score=23.1]; Vacuolar 14 Fab1-binding region [PF12755.9, score=20.5]} {Human: ENSG00000198718, TOGARAM1, TOG array regulator of axonemal microtubules 1, [RH, Score=261, Expect=3e-73]} {Mouse: ENSMUSG00000035614, Togaram1, TOG array regulator of axonemal microtubules 1, [RH, Score=261, Expect=9e-76]} {Dmel: FBgn0259818, CG42399, [Score=69.3, Expect=1e-11]} {Celegans: WBGene00000491, che-12, Crescerin-like protein che-12, [Score=165, Expect=1e-41]} {Smed: dd_Smed_v6_13421_0_1, dd_Smed_v6_13421_0_1, [Score=164, Expect=3e-41]} {RNA1509_8070} {RNA1310_5990, RNA1509_8070} {RNA1509_8070, RNA815_11508}
42. MligTC455_48627 62 1.3 Mlig455_041499

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_041499 {REF} {Length: 702} {NoTransDecoderORF} {RNA1310_82174} {RNA815_53726}
43. MligTC455_05000 16 0.33 Mlig455_028316

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_028316 {REF} {Length: 823} {NoTransDecoderORF}
44. MligTC455_19358 257 5.35 Mlig455_066132

Neo: -

Age: -

Region-enriched R7: 2.720/0.00219

 0.964 - - - - 0.964 - Mlig455_066132 {REF} {Length: 828} {RNA1509_29828} {RNA1310_19258} {RNA815_18075}
45. MligTC455_24672 39 0.81 Mlig455_047708

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_047708 {REF} {Length: 1539} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=32.9]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=26.1]} {Smed: dd_Smed_v6_24805_0_1, dd_Smed_v6_24805_0_1, [Score=150, Expect=2e-41]} {RNA1310_20543} {RNA815_8393}
46. MligTC455_28950 25 0.52 Mlig455_009312

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_009312 {REF} {Length: 2343} {RNA1509_47002} {RNA1310_19138.2} {RNA815_7423}
47. MligTC455_10259 124 2.58 Mlig455_052843

Neo: Int S/G2/M

Age: -

 0.96 - - - - 0.960 - Mlig455_052843 {REF} {Length: 1170} {RNA1310_32241.1} {RNA815_32339}
48. MligTC455_48767 7 0.15 Mlig455_004539

Neo: -

Age: -

 SEC24A 0.96 - - - - 0.960 - Mlig455_004539 {REF} {Length: 6876} {TRANSSPLICED} {Pfam: Sec23/Sec24 trunk domain [PF04811.17, score=116.9]; Sec23/Sec24 beta-sandwich domain [PF08033.14, score=52.6]; Sec23/Sec24 helical domain [PF04815.17, score=51.2]; Sec23/Sec24 zinc finger [PF04810.17, score=48.8]} {Human: ENSG00000113615, SEC24A, SEC24 homolog A, COPII coat complex component, [Score=550, Expect=1e-168]; ENSG00000138802, SEC24B, SEC24 homolog B, COPII coat complex component, [Score=543, Expect=1e-164]} {Mouse: ENSMUSG00000036391, Sec24a, Sec24 related gene family, member A (S. cerevisiae), [Score=541, Expect=9e-166]; ENSMUSG00000001052, Sec24b, Sec24 related gene family, member B (S. cerevisiae), [Score=523, Expect=2e-157]} {Dmel: FBgn0033460, Sec24AB, Secretory 24AB, [Score=493, Expect=5e-148]} {Celegans: WBGene00004756, sec-24.2, Yeast SEC homolog, [Score=492, Expect=7e-150]} {Smed: dd_Smed_v6_3760_0_1, dd_Smed_v6_3760_0_1, [Score=488, Expect=3e-149]} {RNA1509_27618, RNA1509_35779} {RNA1310_9489.1, RNA1509_27618} {RNA1509_27618, RNA815_10954}
49. MligTC455_10815 32 0.67 Mlig455_063658

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_063658 {REF} {Length: 1108} {NoTransDecoderORF} {RNA1509_56535} {RNA1310_58133.1} {RNA815_57938}
50. MligTC455_22918 48 0.99 Mlig455_024197

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_024197 {REF} {Length: 882} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24504} {RNA1310_56956} {RNA815_52770}
51. MligTC455_28971 36 0.74 Mlig455_020333, Mlig455_040969

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_020333 {REF} {Length: 1591} {TRANSSPLICED} {RNA1509_16469} {RNA1310_4476.2} {RNA815_8156}

Mlig455_040969 {REF} {Length: 1285} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.1]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=9e-42]} {RNA1509_16469} {RNA1310_4476.2} {RNA815_8156}
52. MligTC455_32663 99 2.06 Mlig455_067221

Neo: Int S/G2/M

Age: Up-Down-Up

 0.958 - - - - 0.958 - Mlig455_067221 {REF} {Length: 2415} {Pfam: PH domain [PF00169.31, score=25.8]} {RNA1509_43721} {RNA1310_326} {RNA815_8437.1}
53. MligTC455_07107 177 3.68 Mlig455_037410

Neo: -

Age: -

Region-enriched R8: 7.446/0.00923

 0.957 - - - - 0.957 - Mlig455_037410 {REF} {Length: 2565} {RNA1509_34967} {RNA1310_16201, RNA1509_34967} {RNA1509_34967, RNA815_28129}
54. MligTC455_48387 156 3.25 Mlig455_034372, Mlig455_043879

Neo: -

Age: -

 RAB24 0.955 - - - - 0.955 -

Mlig455_034372 {REF} {Length: 968} {RNA1310_23950} {RNA815_28430}

Mlig455_043879 {REF} {Length: 3209} {Pfam: Ras family [PF00071.24, score=97.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=78.9]; ADP-ribosylation factor family [PF00025.23, score=24.3]} {Human: ENSG00000169228, RAB24, RAB24, member RAS oncogene family, [Score=99.8, Expect=4e-25]} {Mouse: ENSMUSG00000034789, Rab24, RAB24, member RAS oncogene family, [Score=100, Expect=2e-25]} {Dmel: FBgn0015797, Rab6, [Score=91.3, Expect=4e-22]} {Celegans: WBGene00004270, rab-6.2, Ras-related protein Rab-6.2, [Score=90.9, Expect=3e-22]} {Smed: dd_Smed_v6_2486_0_1, dd_Smed_v6_2486_0_1, [Score=92.0, Expect=1e-22]} {RNA1310_23950} {RNA815_28430}
55. MligTC455_15703 61 1.28 Mlig455_028081, Mlig455_028266

Neo: Int S/G2/M

Age: -

 0.954 - - - - 0.954 -

Mlig455_028081 {REF} {Length: 452} {NoTransDecoderORF} {RNA1509_39445} {RNA1310_4564} {RNA815_3067}

Mlig455_028266 {REF} {Length: 264} {NoTransDecoderORF} {RNA1509_21675} {RNA1310_4564} {RNA815_3067}
56. MligTC455_21878 777 16.19 Mlig455_005870

Neo: -

Age: logFC(26M/2M)=-1.101

 TRPM1 0.954 - - - - 0.954 - Mlig455_005870 {REF} {Length: 5568} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=44.1]; Ankyrin repeats (many copies) [PF13637.8, score=38.2]; Ion transport protein [PF00520.33, score=36.8]; Ankyrin repeats (many copies) [PF13857.8, score=36.7]; Ankyrin repeat [PF13606.8, score=26.0]; Ankyrin repeat [PF00023.32, score=25.0]} {Human: ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=73.2, Expect=3e-12]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=73.2, Expect=3e-12]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=74.7, Expect=8e-13]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=59.7, Expect=2e-08]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=70.1, Expect=1e-11]} {Smed: dd_Smed_v6_17981_0_1, dd_Smed_v6_17981_0_1, [Score=93.6, Expect=7e-19]} {RNA1509_43082, RNA1509_7199} {RNA1310_2221.1, RNA1509_43082, RNA1509_7199} {RNA1509_43082, RNA1509_7199, RNA815_581}
57. MligTC455_15356 22 0.45 Mlig455_002421

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_002421 {REF} {Length: 588} {NoTransDecoderORF} {RNA1509_51125} {RNA1310_30349.2}
58. MligTC455_30548 45 0.93 Mlig455_033532, Mlig455_069202

Neo: -

Age: -

 SNX6 0.953 - - - - 0.953 -

Mlig455_033532 {REF} {Length: 2022} {Pfam: Vps5 C terminal like [PF09325.12, score=56.1]; PX domain [PF00787.26, score=48.6]} {Human: ENSG00000129515, SNX6, sorting nexin 6, [RH, Score=402, Expect=5e-136]; ENSG00000089006, SNX5, sorting nexin 5, [RH, Score=390, Expect=2e-131]} {Mouse: ENSMUSG00000005656, Snx6, sorting nexin 6, [RH, Score=404, Expect=6e-137]; ENSMUSG00000027423, Snx5, sorting nexin 5, [RH, Score=390, Expect=2e-131]} {Dmel: FBgn0032005, Snx6, Sorting nexin 6, [Score=370, Expect=2e-123]} {Celegans: WBGene00013354, snx-6, Sorting NeXin, [Score=356, Expect=6e-119]} {Smed: dd_Smed_v6_2271_0_1, dd_Smed_v6_2271_0_1, [Score=366, Expect=2e-122]} {RNA1509_4198} {RNA1310_9395.1} {RNA815_2901.1}

Mlig455_069202 {REF} {Length: 2075} {Pfam: Vps5 C terminal like [PF09325.12, score=56.6]; PX domain [PF00787.26, score=49.0]} {Human: ENSG00000129515, SNX6, sorting nexin 6, [RH, Score=401, Expect=1e-136]; ENSG00000089006, SNX5, sorting nexin 5, [RH, Score=390, Expect=3e-132]} {Mouse: ENSMUSG00000005656, Snx6, sorting nexin 6, [RH, Score=403, Expect=1e-137]; ENSMUSG00000027423, Snx5, sorting nexin 5, [RH, Score=390, Expect=2e-132]} {Dmel: FBgn0032005, Snx6, Sorting nexin 6, [Score=370, Expect=5e-124]} {Celegans: WBGene00013354, snx-6, Sorting NeXin, [Score=355, Expect=2e-119]} {Smed: dd_Smed_v6_2271_0_1, dd_Smed_v6_2271_0_1, [Score=367, Expect=2e-123]} {RNA1509_4198} {RNA1310_9395.1} {RNA815_2901.1}
59. MligTC455_43082 281 5.85 Mlig455_043748, Mlig455_047477

Neo: -

Age: -

 0.953 - - - - 0.953 -

Mlig455_043748 {REF} {Length: 674} {RNA1509_7484} {RNA1310_67034} {RNA815_1925}

Mlig455_047477 {REF} {Length: 677} {RNA1509_7484} {RNA1310_67034} {RNA815_1925}
60. MligTC455_06821 8 0.17 Mlig455_032088

Neo: -

Age: -

 CAPN8 0.951 - - - - 0.951 - Mlig455_032088 {REF} {Length: 3116} {Pfam: Calpain family cysteine protease [PF00648.23, score=284.3]; Calpain large subunit, domain III [PF01067.24, score=32.7]} {Human: ENSG00000203697, CAPN8, calpain 8, [Score=233, Expect=1e-68]; ENSG00000135773, CAPN9, calpain 9, [Score=229, Expect=2e-67]; ENSG00000137225, CAPN11, calpain 11, [Score=229, Expect=2e-67]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=238, Expect=6e-71]; ENSMUSG00000038599, Capn8, calpain 8, [Score=230, Expect=6e-68]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=225, Expect=2e-67]} {Celegans: WBGene00000546, clp-6, CaLPain family, [Score=216, Expect=1e-63]} {Smed: dd_Smed_v6_1752_0_4, dd_Smed_v6_1752_0_4, [Score=225, Expect=7e-66]} {RNA1509_52904} {RNA1310_59215} {RNA815_23274}
61. MligTC455_06171 11 0.22 Mlig455_042271

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_042271 {REF} {Length: 213} {NoTransDecoderORF}
62. MligTC455_41173 89 1.85 Mlig455_012423

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_012423 {REF} {Length: 2142} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=22.2]} {RNA1509_43208} {RNA1310_19732} {RNA815_10956}
63. MligTC455_50700 53 1.11 Mlig455_037299

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_037299 {REF} {Length: 504} {NoTransDecoderORF} {RNA1310_47823} {RNA815_22886.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA