M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_42194

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42194 103 2.15 Mlig455_048368

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.531

 Mlig455_048368 {REF} {Length: 2225} {TRANSSPLICED} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=52.9]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.8]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=143, Expect=5e-40]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321}

Cumulative graph for MligTC455_42194

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.337 1.862 0.89106 1.00000
RegionR2 -0.62 1.862 0.55179 0.91724
RegionR3 -0.265 1.862 0.77026 1.00000
RegionR4 1.115 1.862 0.27910 0.58636
RegionR5 1.016 1.862 0.17426 0.44620
RegionR6 0.419 1.862 0.61783 1.00000
RegionR7 0.314 1.862 0.77336 1.00000
RegionR8 -1.642 1.862 0.41175 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.484 1.862 0.49922 1.00000
RegenerationR2 -1.018 1.862 0.18621 0.62895
RegenerationR3 -0.417 1.862 0.64431 0.92654
RegenerationR4 -0.548 1.862 0.52956 0.88409
RegenerationR5 0.227 1.862 0.75738 0.97437
RegenerationR6 -1.505 1.862 0.11040 0.41018
RegenerationBL 0.656 1.862 0.56846 0.92226
RegenerationTP 0.365 1.862 0.79852 1.00000


Genes with expression patterns similar to MligTC455_42194

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42194 103 2.15 Mlig455_048368

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.531

 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_048368 {REF} {Length: 2225} {TRANSSPLICED} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=52.9]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.8]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=143, Expect=5e-40]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321}
2. MligTC455_18885 702 14.63 Mlig455_043086

Neo: -

Age: -

Region-enriched R5: 1.483/0.00503

 0.961 - - - - - 0.961 Mlig455_043086 {REF} {Length: 1459} {TRANSSPLICED} {Pfam: Protein phosphatase 1 regulatory subunit 35 C-terminus [PF15503.8, score=21.6]} {RNA1509_29701, RNA1509_42732} {RNA1310_24161, RNA1509_29701, RNA1509_42732} {RNA1509_29701, RNA1509_42732, RNA815_18643}
3. MligTC455_35010 516 10.75 Mlig455_054169

Neo: -

Age: logFC(26M/2M)=-0.545

Region-enriched R5: 1.964/0.00569

 CALML5 0.957 - - - - - 0.957 Mlig455_054169 {REF} {Length: 914} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=51.8]; EF-hand domain pair [PF13499.8, score=50.0]; EF-hand domain [PF13405.8, score=42.7]; EF-hand domain pair [PF13833.8, score=41.2]; EF hand [PF13202.8, score=39.4]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=27.0]} {Human: ENSG00000178372, CALML5, calmodulin like 5, [Score=56.2, Expect=3e-10]} {Mouse: ENSMUSG00000005649, Cabp5, calcium binding protein 5, [Score=55.1, Expect=8e-10]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=48.5, Expect=1e-07]} {Celegans: WBGene00006861, cal-5, CALmodulin related genes, [Score=62.0, Expect=8e-13]} {Smed: dd_Smed_v6_11942_0_1, dd_Smed_v6_11942_0_1, [Score=50.4, Expect=2e-08]} {RNA1509_32665} {RNA1310_29494.2} {RNA815_16454.1}
4. MligTC455_17065 107 2.23 Mlig455_020928

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.486

 0.954 - - 0.954 - - - Mlig455_020928 {REF} {Length: 968} {NoTransDecoderORF} {RNA1310_36631} {RNA815_25225}
5. MligTC455_40700 112 2.33 Mlig455_027114

Neo: Int S/G2/M

Age: -

 0.953 - - - - - 0.953 Mlig455_027114 {REF} {Length: 3119} {TRANSSPLICED} {Pfam: Leucine Rich Repeat [PF00560.35, score=26.2]} {RNA1509_28290} {RNA1310_14147} {RNA815_4034.1}
6. MligTC455_52921 903 18.8 Mlig455_039568, Mlig455_051378

Neo: -

Age: -

 MLH3 0.953 - - - - - 0.953

Mlig455_039568 {REF} {Length: 890} {TRANSSPLICED} {Human: ENSG00000119684, MLH3, mutL homolog 3, [RH, Score=50.4, Expect=3e-07]} {Mouse: ENSMUSG00000021245, Mlh3, mutL homolog 3, [Score=47.8, Expect=2e-06]} {Smed: dd_Smed_v6_25712_0_1, dd_Smed_v6_25712_0_1, [RH, Score=58.2, Expect=4e-11]} {RNA1509_20519} {RNA1310_40805, RNA1509_20519} {RNA1509_20519, RNA815_19876}

Mlig455_051378 {REF} {Length: 879} {TRANSSPLICED} {Human: ENSG00000119684, MLH3, mutL homolog 3, [RH, Score=50.8, Expect=3e-07]} {Mouse: ENSMUSG00000021245, Mlh3, mutL homolog 3, [Score=47.8, Expect=3e-06]} {Smed: dd_Smed_v6_25712_0_1, dd_Smed_v6_25712_0_1, [RH, Score=58.2, Expect=7e-11]} {RNA1509_20519} {RNA1310_40805} {RNA815_19876}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA