TomoSeq data search

Data search

Results for MligTC455_42613

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_42613

244

5.09

Mlig455_060261

Neo: -

Age: Up-Down-Down

TENT4A

Mlig455_060261 {REF} {Length: 6598} {TRANSSPLICED} {Pfam: Cid1 family poly A polymerase [PF03828.21, score=53.1]; Nucleotidyltransferase domain [PF01909.25, score=47.4]; TUTase nucleotidyltransferase domain [PF19088.2, score=46.4]} {Human: ENSG00000112941, TENT4A, terminal nucleotidyltransferase 4A, [RH, Score=364, Expect=8e-116]; ENSG00000121274, TENT4B, terminal nucleotidyltransferase 4B, [RH, Score=358, Expect=9e-115]} {Mouse: ENSMUSG00000034575, Tent4a, terminal nucleotidyltransferase 4A, [RH, Score=361, Expect=7e-115]; ENSMUSG00000036779, Tent4b, terminal nucleotidyltransferase 4B, [RH, Score=357, Expect=1e-114]} {Dmel: FBgn0030049, Trf4-1, Topoisomerase related function 4-1, [RH, Score=346, Expect=3e-107]} {Celegans: WBGene00014115, gld-4, Poly(A) RNA polymerase gld-4, [RH, Score=201, Expect=3e-55]} {Smed: dd_Smed_v6_5011_0_1, dd_Smed_v6_5011_0_1, [RH, Score=309, Expect=3e-97]} {RNA1509_10856} {RNA1310_11960, RNA1509_10856} {RNA1509_10856, RNA815_18144.1}

Cumulative graph for MligTC455_42613

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.703	3.034	0.40277	1.00000
RegionR2	1.291	3.034	0.11044	0.41098
RegionR3	1.029	3.034	0.06816	0.46144
RegionR4	0.194	3.034	0.79667	1.00000
RegionR5	0.911	3.034	0.07214	0.24332
RegionR6	0.056	3.034	0.93096	1.00000
RegionR7	-0.625	3.034	0.48822	1.00000
RegionR8	-1.154	3.034	0.33112	0.96430

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-2.349	3.034	0.70759	1.00000
RegenerationR2	-0.406	3.034	0.50234	0.87237
RegenerationR3	0.097	3.034	0.87446	1.00000
RegenerationR4	0.528	3.034	0.45621	0.84463
RegenerationR5	0.473	3.034	0.39394	0.79450
RegenerationR6	0.762	3.034	0.29874	0.64904
RegenerationBL	2.042	3.034	0.02831	0.18677
RegenerationTP	1.234	3.034	0.24944	0.69667

Genes with expression patterns similar to MligTC455_42613

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_42613	244	5.09	Mlig455_060261	Neo: - Age: Up-Down-Down	TENT4A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_060261 {REF} {Length: 6598} {TRANSSPLICED} {Pfam: Cid1 family poly A polymerase [PF03828.21, score=53.1]; Nucleotidyltransferase domain [PF01909.25, score=47.4]; TUTase nucleotidyltransferase domain [PF19088.2, score=46.4]} {Human: ENSG00000112941, TENT4A, terminal nucleotidyltransferase 4A, [RH, Score=364, Expect=8e-116]; ENSG00000121274, TENT4B, terminal nucleotidyltransferase 4B, [RH, Score=358, Expect=9e-115]} {Mouse: ENSMUSG00000034575, Tent4a, terminal nucleotidyltransferase 4A, [RH, Score=361, Expect=7e-115]; ENSMUSG00000036779, Tent4b, terminal nucleotidyltransferase 4B, [RH, Score=357, Expect=1e-114]} {Dmel: FBgn0030049, Trf4-1, Topoisomerase related function 4-1, [RH, Score=346, Expect=3e-107]} {Celegans: WBGene00014115, gld-4, Poly(A) RNA polymerase gld-4, [RH, Score=201, Expect=3e-55]} {Smed: dd_Smed_v6_5011_0_1, dd_Smed_v6_5011_0_1, [RH, Score=309, Expect=3e-97]} {RNA1509_10856} {RNA1310_11960, RNA1509_10856} {RNA1509_10856, RNA815_18144.1}
2.	MligTC455_42614	243	5.07	Mlig455_060270	Neo: - Age: -	TENT4A	5.982	1.000	0.999	0.994	1.000	0.997	0.992	Mlig455_060270 {REF} {Length: 7021} {Pfam: Cid1 family poly A polymerase [PF03828.21, score=53.2]; Nucleotidyltransferase domain [PF01909.25, score=47.5]; TUTase nucleotidyltransferase domain [PF19088.2, score=46.3]} {Human: ENSG00000112941, TENT4A, terminal nucleotidyltransferase 4A, [RH, Score=365, Expect=1e-116]; ENSG00000121274, TENT4B, terminal nucleotidyltransferase 4B, [RH, Score=361, Expect=5e-116]} {Mouse: ENSMUSG00000034575, Tent4a, terminal nucleotidyltransferase 4A, [RH, Score=363, Expect=7e-116]; ENSMUSG00000036779, Tent4b, terminal nucleotidyltransferase 4B, [RH, Score=360, Expect=6e-116]} {Dmel: FBgn0030049, Trf4-1, Topoisomerase related function 4-1, [RH, Score=347, Expect=3e-108]} {Celegans: WBGene00014115, gld-4, Poly(A) RNA polymerase gld-4, [RH, Score=204, Expect=1e-56]} {Smed: dd_Smed_v6_5011_0_1, dd_Smed_v6_5011_0_1, [RH, Score=312, Expect=5e-99]} {RNA1509_10856, RNA1509_36001} {RNA1310_11960, RNA1509_36001} {RNA1509_36001, RNA815_18144.1}
3.	MligTC455_26000	461	9.6	Mlig455_010686, Mlig455_010783	Neo: - Age: - Region-enriched R5: 1.635/0.03801	TAF7	1.745	-	-	-	0.952	-	0.793	Mlig455_010686 {REF} {Length: 1534} {TRANSSPLICED} {Pfam: TAFII55 protein conserved region [PF04658.15, score=149.3]} {Human: ENSG00000178913, TAF7, TATA-box binding protein associated factor 7, [RH, Score=137, Expect=1e-37]} {Mouse: ENSMUSG00000074734, 4933416C03Rik, RIKEN cDNA 4933416C03 gene, [RH, Score=138, Expect=6e-38]; ENSMUSG00000051316, Taf7, TATA-box binding protein associated factor 7, [RH, Score=137, Expect=7e-38]} {Dmel: FBgn0024909, Taf7, TBP-associated factor 7, [RH, Score=132, Expect=3e-35]} {Celegans: WBGene00006389, taf-7.2, TAF (TBP-associated transcription factor) family, [RH, Score=108, Expect=4e-28]} {Smed: dd_Smed_v6_4011_0_1, dd_Smed_v6_4011_0_1, [RH, Score=139, Expect=1e-39]} {RNA1509_20953} {RNA1310_32671.1, RNA1509_20953} {RNA1509_20953, RNA815_18618} Mlig455_010783 {REF} {Length: 924} {NoTransDecoderORF} {RNA1509_34445} {RNA1310_73031} {RNA815_51441}
4.	MligTC455_31258	459	9.56	Mlig455_060337	Neo: - Age: -	PTPN2	1.66	-	-	-	-	0.957	0.703	Mlig455_060337 {REF} {Length: 3192} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=184.1]} {Human: ENSG00000175354, PTPN2, protein tyrosine phosphatase, non-receptor type 2, [Score=217, Expect=6e-65]; ENSG00000196396, PTPN1, protein tyrosine phosphatase, non-receptor type 1, [Score=214, Expect=4e-63]} {Mouse: ENSMUSG00000024539, Ptpn2, protein tyrosine phosphatase, non-receptor type 2, [Score=215, Expect=1e-64]; ENSMUSG00000027540, Ptpn1, protein tyrosine phosphatase, non-receptor type 1, [Score=210, Expect=5e-62]} {Dmel: FBgn0267487, Ptp61F, Protein tyrosine phosphatase 61F, [Score=185, Expect=9e-52]} {Celegans: WBGene00004214, ptp-2, Tyrosine-protein phosphatase non-receptor type ptp-2, [Score=144, Expect=8e-37]} {Smed: dd_Smed_v6_5710_0_1, dd_Smed_v6_5710_0_1, [Score=207, Expect=8e-61]} {RNA1509_19746} {RNA1310_17855, RNA1509_19746} {RNA1509_19746, RNA815_14676}
5.	MligTC455_44067	62	1.29	Mlig455_022545, Mlig455_022585	Neo: - Age: -	THRA, THRB	0.98	-	-	-	0.980	-	-	Mlig455_022545 {REF} {Length: 4795} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=105.5]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=64.8]} {Human: ENSG00000126351, THRA, thyroid hormone receptor alpha, [Score=169, Expect=2e-44]} {Mouse: ENSMUSG00000058756, Thra, thyroid hormone receptor alpha, [Score=172, Expect=1e-45]} {Dmel: FBgn0000546, EcR, Ecdysone receptor, [RH, Score=175, Expect=5e-45]} {Celegans: WBGene00003613, nhr-14, Nuclear hormone receptor family member nhr-14, [Score=108, Expect=7e-25]} {Smed: dd_Smed_v6_3012_0_1, dd_Smed_v6_3012_0_1, [Score=200, Expect=6e-54]} {RNA1509_27629} {RNA1310_74061} {RNA815_54074} Mlig455_022585 {REF} {Length: 3179} {Pfam: Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=68.1]} {Human: ENSG00000151090, THRB, thyroid hormone receptor beta, [Score=120, Expect=1e-30]; ENSG00000126351, THRA, thyroid hormone receptor alpha, [Score=120, Expect=6e-31]; ENSG00000131759, RARA, retinoic acid receptor alpha, [Score=114, Expect=6e-29]} {Mouse: ENSMUSG00000058756, Thra, thyroid hormone receptor alpha, [Score=120, Expect=4e-31]; ENSMUSG00000021779, Thrb, thyroid hormone receptor beta, [Score=120, Expect=1e-30]} {Dmel: FBgn0004865, Eip78C, Ecdysone-induced protein 78C, [Score=62.4, Expect=9e-11]} {Smed: dd_Smed_v6_3012_0_1, dd_Smed_v6_3012_0_1, [Score=86.3, Expect=8e-19]} {RNA1310_74061} {RNA815_54074}

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