M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_42695

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42695 22 0.46 Mlig455_068929

Neo: -

Age: logFC(26M/2M)=-0.443

 Mlig455_068929 {REF} {Length: 2515} {TRANSSPLICED} {RNA1509_22410} {RNA1310_19788} {RNA815_42941}

Cumulative graph for MligTC455_42695

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.417 0.787 0.99990 1.00000
RegionR2 1.483 0.787 0.55670 0.92029
RegionR3 -0.302 0.787 0.99993 1.00000
RegionR4 0.235 0.787 0.99990 1.00000
RegionR5 2.472 0.787 0.07668 0.25405
RegionR6 -0.095 0.787 1.00000 1.00000
RegionR7 -1.454 0.787 0.99987 1.00000
RegionR8 2.078 0.787 0.56583 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.554 0.787 1.00000 1.00000
RegenerationR2 0.845 0.787 0.77617 0.98222
RegenerationR3 2.521 0.787 0.28476 0.71657
RegenerationR4 2.826 0.787 0.37843 0.80044
RegenerationR5 0.335 0.787 0.94072 1.00000
RegenerationR6 0.135 0.787 0.84456 0.99784
RegenerationBL -2.147 0.787 0.99989 1.00000
RegenerationTP -2.181 0.787 0.99987 1.00000


Genes with expression patterns similar to MligTC455_42695

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42695 22 0.46 Mlig455_068929

Neo: -

Age: logFC(26M/2M)=-0.443

 2 - - - 1.000 - 1.000 Mlig455_068929 {REF} {Length: 2515} {TRANSSPLICED} {RNA1509_22410} {RNA1310_19788} {RNA815_42941}
2. MligTC455_18299 9 0.19 Mlig455_069776

Neo: -

Age: -

 0.995 - - - 0.995 - - Mlig455_069776 {REF} {Length: 422} {NoTransDecoderORF} {RNA1509_28510} {RNA1310_55962} {RNA815_33478}
3. MligTC455_00877 8 0.18 Mlig455_018214

Neo: -

Age: -

 0.984 - - - 0.984 - - Mlig455_018214 {REF} {Length: 1784} {Pfam: Integrase zinc binding domain [PF17921.3, score=52.2]; H2C2 zinc finger [PF09337.12, score=23.6]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=55.5, Expect=3e-09]} {RNA1310_18657.1} {RNA815_53591}
4. MligTC455_18189 10 0.21 Mlig455_026083

Neo: -

Age: -

 0.984 - - - 0.984 - - Mlig455_026083 {REF} {Length: 1571} {RNA1509_41342} {RNA1310_148712} {RNA815_60827}
5. MligTC455_21709 21 0.43 Mlig455_037997

Neo: -

Age: logFC(26M/2M)=1.185

 0.965 - - - 0.965 - - Mlig455_037997 {REF} {Length: 2855} {Pfam: Domain of unknown function (DUF4573) [PF15140.8, score=31.6]} {RNA1310_25743.1}
6. MligTC455_19393 53 1.11 Mlig455_050405

Neo: -

Age: -

 ATG7 0.962 - - - - - 0.962 Mlig455_050405 {REF} {Length: 3163} {TRANSSPLICED} {Pfam: Ubiquitin-like modifier-activating enzyme ATG7 N-terminus [PF16420.7, score=236.5]; ThiF family [PF00899.23, score=143.5]} {Human: ENSG00000197548, ATG7, autophagy related 7, [RH, Score=556, Expect=0.0]} {Mouse: ENSMUSG00000030314, Atg7, autophagy related 7, [RH, Score=554, Expect=0.0]} {Dmel: FBgn0034366, Atg7, Autophagy-related 7, [RH, Score=447, Expect=3e-148]} {Celegans: WBGene00010882, atg-7, AuTophaGy (Yeast Atg homolog), [RH, Score=446, Expect=1e-148]} {Smed: dd_Smed_v6_5083_0_1, dd_Smed_v6_5083_0_1, [RH, Score=465, Expect=2e-155]} {RNA1509_36675} {RNA1310_10886} {RNA815_14332}
7. MligTC455_46453 12 0.25 Mlig455_041607

Neo: -

Age: -

 SLC33A1 0.96 - - - 0.960 - - Mlig455_041607 {REF} {Length: 2163} {TRANSSPLICED} {Pfam: Acetyl-coenzyme A transporter 1 [PF13000.9, score=353.2]} {Human: ENSG00000169359, SLC33A1, solute carrier family 33 member 1, [RH, Score=434, Expect=5e-146]} {Mouse: ENSMUSG00000027822, Slc33a1, solute carrier family 33 (acetyl-CoA transporter), member 1, [RH, Score=434, Expect=5e-146]} {Dmel: FBgn0036662, CG9706, [RH, Score=414, Expect=8e-139]} {Celegans: WBGene00012033, T26C5.3, [RH, Score=405, Expect=4e-135]} {Smed: dd_Smed_v6_6308_0_1, dd_Smed_v6_6308_0_1, [RH, Score=501, Expect=5e-173]} {RNA1509_8415} {RNA1310_9664, RNA1509_8415} {RNA1509_8415, RNA815_3329.1}
8. MligTC455_14934 36 0.76 Mlig455_005168

Neo: -

Age: -

Regeneration-upregulated R2: 5.261

Regeneration-enriched R2: 5.261

 0.958 - - - - - 0.958 Mlig455_005168 {REF} {Length: 1210} {RNA1509_7696} {RNA1310_27828} {RNA815_12648}
9. MligTC455_26688 10 0.22 Mlig455_009181, Mlig455_022332

Neo: -

Age: Down-Up-Down

 TOB1 0.952 - - - 0.952 - -

Mlig455_009181 {REF} {Length: 1027} {RNA1509_18097} {RNA1310_32376.2} {RNA815_29511.1}

Mlig455_022332 {REF} {Length: 3499} {Pfam: BTG family [PF07742.14, score=130.7]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.9]} {Human: ENSG00000141232, TOB1, transducer of ERBB2, 1, [RH, Score=152, Expect=1e-43]} {Mouse: ENSMUSG00000048546, Tob2, transducer of ERBB2, 2, [RH, Score=155, Expect=6e-45]; ENSMUSG00000037573, Tob1, transducer of ErbB-2.1, [RH, Score=153, Expect=7e-44]} {Dmel: FBgn0028397, Tob, [Score=157, Expect=4e-44]} {Celegans: WBGene00001483, fog-3, FOG-3 protein; Feminization Of Germline, [Score=65.9, Expect=2e-12]} {Smed: dd_Smed_v6_7444_0_1, dd_Smed_v6_7444_0_1, [RH, Score=117, Expect=2e-31]} {RNA1509_52467} {RNA1310_20657} {RNA815_8577}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA