M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_42751

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42751 1310 27.28 Mlig455_020163

Neo: -

Age: -

 POC1A Mlig455_020163 {REF} {Length: 1804} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=213.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=79.6]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=37.3]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=36.0]; WD40-like domain [PF17005.7, score=19.4]} {Human: ENSG00000164087, POC1A, POC1 centriolar protein A, [RH, Score=473, Expect=1e-165]} {Mouse: ENSMUSG00000023345, Poc1a, POC1 centriolar protein A, [RH, Score=462, Expect=1e-161]} {Dmel: FBgn0036354, Poc1, Proteome of centrioles 1, [RH, Score=299, Expect=8e-98]} {Celegans: WBGene00010572, wdr-5.2, WD repeat-containing protein wdr-5.2, [Score=146, Expect=2e-39]} {Smed: dd_Smed_v6_10806_0_1, dd_Smed_v6_10806_0_1, [RH, Score=476, Expect=6e-166]} {RNA1509_16468, RNA1509_26275, RNA1509_46669, RNA1509_51656} {RNA1310_16009.1, RNA1509_16468, RNA1509_26275, RNA1509_46669, RNA1509_51656} {RNA1509_16468, RNA1509_26275, RNA1509_46669, RNA1509_51656, RNA815_13948}

Cumulative graph for MligTC455_42751

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.226 4.984 0.78249 1.00000
RegionR2 0.248 4.984 0.47959 0.86388
RegionR3 -0.026 4.984 0.92841 1.00000
RegionR4 0.093 4.984 0.77315 1.00000
RegionR5 0.034 4.984 0.89549 1.00000
RegionR6 -0.14 4.984 0.63571 1.00000
RegionR7 0.499 4.984 0.16291 0.74512
RegionR8 -0.483 4.984 0.36720 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.252 4.984 0.80956 1.00000
RegenerationR2 0.147 4.984 0.59720 0.91442
RegenerationR3 0.342 4.984 0.27471 0.70895
RegenerationR4 0.266 4.984 0.39757 0.81181
RegenerationR5 0.244 4.984 0.39346 0.79419
RegenerationR6 0.363 4.984 0.25661 0.60683
RegenerationBL 0.202 4.984 0.60024 0.94712
RegenerationTP -0.739 4.984 0.12414 0.53461


Genes with expression patterns similar to MligTC455_42751

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42751 1310 27.28 Mlig455_020163

Neo: -

Age: -

 POC1A 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_020163 {REF} {Length: 1804} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=213.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=79.6]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=37.3]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=36.0]; WD40-like domain [PF17005.7, score=19.4]} {Human: ENSG00000164087, POC1A, POC1 centriolar protein A, [RH, Score=473, Expect=1e-165]} {Mouse: ENSMUSG00000023345, Poc1a, POC1 centriolar protein A, [RH, Score=462, Expect=1e-161]} {Dmel: FBgn0036354, Poc1, Proteome of centrioles 1, [RH, Score=299, Expect=8e-98]} {Celegans: WBGene00010572, wdr-5.2, WD repeat-containing protein wdr-5.2, [Score=146, Expect=2e-39]} {Smed: dd_Smed_v6_10806_0_1, dd_Smed_v6_10806_0_1, [RH, Score=476, Expect=6e-166]} {RNA1509_16468, RNA1509_26275, RNA1509_46669, RNA1509_51656} {RNA1310_16009.1, RNA1509_16468, RNA1509_26275, RNA1509_46669, RNA1509_51656} {RNA1509_16468, RNA1509_26275, RNA1509_46669, RNA1509_51656, RNA815_13948}
2. MligTC455_30673 1239 25.81 Mlig455_023260, Mlig455_030004, Mlig455_051427

Neo: -

Age: -

 1.764 - - 0.811 0.953 - -

Mlig455_023260 {REF} {Length: 2216} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=98.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=79.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=57.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=31.4]; Aspartyl protease [PF13650.8, score=28.8]} {Smed: dd_Smed_v6_1574_6_38, dd_Smed_v6_1574_6_38, [Score=368, Expect=2e-118]} {RNA1509_30575} {RNA1310_870} {RNA815_993.1}

Mlig455_030004 {REF} {Length: 3461} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=124.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=119.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=69.6]; Integrase zinc binding domain [PF17921.3, score=67.2]; Integrase core domain [PF00665.28, score=52.2]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=94.4, Expect=6e-19]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=400, Expect=1e-121]} {RNA1509_29748} {RNA1310_870} {RNA815_993.1}

Mlig455_051427 {REF} {Length: 10048} {TRANSSPLICED} {Pfam: TMEM154 protein family [PF15102.8, score=18.9]} {RNA1509_29748} {RNA1310_870} {RNA815_993.1}
3. MligTC455_30674 1192 24.83 Mlig455_051439

Neo: -

Age: logFC(26M/2M)=-0.307

Region-enriched R4: 1.253/0.02916

 1.751 - - 0.800 0.951 - - Mlig455_051439 {REF} {Length: 4565} {TRANSSPLICED} {Pfam: Family of unknown function (DUF5305) [PF17231.4, score=20.8]; TMEM154 protein family [PF15102.8, score=19.7]; Domain of unknown function (DUF3377) [PF11857.10, score=19.4]} {RNA1509_12475, RNA1509_25956, RNA1509_57309} {RNA1310_6745.1, RNA1509_25956, RNA1509_57309} {RNA1509_25956, RNA1509_57309, RNA815_2563.1}
4. MligTC455_37376 444 9.25 Mlig455_031508

Neo: -

Age: -

 IK 1.723 - - 0.764 0.959 - - Mlig455_031508 {REF} {Length: 2646} {TRANSSPLICED} {Pfam: RED-like protein N-terminal region [PF07808.15, score=220.0]; RED-like protein C-terminal region [PF07807.13, score=153.3]; Anti-sigma-K factor rskA [PF10099.11, score=19.4]} {Human: ENSG00000113141, IK, IK cytokine, [RH, Score=166, Expect=2e-43]} {Mouse: ENSMUSG00000024474, Ik, IK cytokine, [RH, Score=166, Expect=1e-43]} {Dmel: FBgn0037660, beag, [RH, Score=146, Expect=5e-37]} {Celegans: WBGene00004896, smu-2, Suppressor of Mec and Unc defects, [RH, Score=127, Expect=8e-31]} {Smed: dd_Smed_v6_3272_0_1, dd_Smed_v6_3272_0_1, [RH, Score=154, Expect=5e-40]} {RNA1509_31571, RNA1509_33696, RNA1509_41865, RNA1509_44296} {RNA1310_7547, RNA1509_31571, RNA1509_33696, RNA1509_41865, RNA1509_44296} {RNA1509_31571, RNA1509_33696, RNA1509_41865, RNA1509_44296, RNA815_7038}
5. MligTC455_30671 1425 29.69 Mlig455_039597

Neo: -

Age: -

 1.704 - - 0.751 0.953 - - Mlig455_039597 {REF} {Length: 689} {NoTransDecoderORF} {RNA1509_15005} {RNA1310_6745.1} {RNA815_19937.1}
6. MligTC455_30672 1486 30.96 Mlig455_039627

Neo: -

Age: logFC(26M/2M)=-0.336

 1.698 - - 0.748 0.950 - - Mlig455_039627 {REF} {Length: 4991} {TRANSSPLICED} {Pfam: TMEM154 protein family [PF15102.8, score=21.9]; Family of unknown function (DUF5305) [PF17231.4, score=21.2]; Domain of unknown function (DUF3377) [PF11857.10, score=21.1]} {RNA1509_15005, RNA1509_23948, RNA1509_33625, RNA1509_41258, RNA1509_8814} {RNA1310_5516.1, RNA1509_15005, RNA1509_23948, RNA1509_33625, RNA1509_41258, RNA1509_8814} {RNA1509_15005, RNA1509_23948, RNA1509_33625, RNA1509_41258, RNA1509_8814, RNA815_2563.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA