M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43151

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43151 436 9.09 Mlig455_021823

Neo: -

Age: -

 RALBP1 Mlig455_021823 {REF} {Length: 4432} {Pfam: RhoGAP domain [PF00620.29, score=130.5]} {Human: ENSG00000017797, RALBP1, ralA binding protein 1, [RH, Score=270, Expect=3e-79]} {Mouse: ENSMUSG00000024096, Ralbp1, ralA binding protein 1, [RH, Score=255, Expect=4e-74]} {Dmel: FBgn0026056, Rlip, Ral interacting protein, [RH, Score=189, Expect=9e-51]} {Celegans: WBGene00011970, rlbp-1, RaL Binding Protein, [RH, Score=103, Expect=6e-23]} {Smed: dd_Smed_v6_2322_0_3, dd_Smed_v6_2322_0_3, [RH, Score=218, Expect=1e-59]} {RNA1509_11082, RNA1509_17375, RNA1509_43123} {RNA1310_776, RNA1509_11082, RNA1509_17375, RNA1509_43123} {RNA1509_11082, RNA1509_17375, RNA1509_43123, RNA815_1606}

Cumulative graph for MligTC455_43151

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.954 3.592 0.07755 0.61238
RegionR2 0.435 3.592 0.44501 0.83349
RegionR3 -0.197 3.592 0.65381 1.00000
RegionR4 0.176 3.592 0.74113 1.00000
RegionR5 0.359 3.592 0.32596 0.66963
RegionR6 -0.582 3.592 0.20290 0.77612
RegionR7 -1.53 3.592 0.05258 0.44085
RegionR8 -0.615 3.592 0.48088 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.583 3.592 0.04966 0.69713
RegenerationR2 0.573 3.592 0.17064 0.60995
RegenerationR3 0.188 3.592 0.71444 0.95305
RegenerationR4 -0.171 3.592 0.73520 0.96607
RegenerationR5 -0.059 3.592 0.89486 1.00000
RegenerationR6 0.792 3.592 0.12833 0.44027
RegenerationBL 1.87 3.592 0.00343 0.05105
RegenerationTP 0.971 3.592 0.22074 0.66434


Genes with expression patterns similar to MligTC455_43151

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43151 436 9.09 Mlig455_021823

Neo: -

Age: -

 RALBP1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_021823 {REF} {Length: 4432} {Pfam: RhoGAP domain [PF00620.29, score=130.5]} {Human: ENSG00000017797, RALBP1, ralA binding protein 1, [RH, Score=270, Expect=3e-79]} {Mouse: ENSMUSG00000024096, Ralbp1, ralA binding protein 1, [RH, Score=255, Expect=4e-74]} {Dmel: FBgn0026056, Rlip, Ral interacting protein, [RH, Score=189, Expect=9e-51]} {Celegans: WBGene00011970, rlbp-1, RaL Binding Protein, [RH, Score=103, Expect=6e-23]} {Smed: dd_Smed_v6_2322_0_3, dd_Smed_v6_2322_0_3, [RH, Score=218, Expect=1e-59]} {RNA1509_11082, RNA1509_17375, RNA1509_43123} {RNA1310_776, RNA1509_11082, RNA1509_17375, RNA1509_43123} {RNA1509_11082, RNA1509_17375, RNA1509_43123, RNA815_1606}
2. MligTC455_31043 537 11.19 Mlig455_030848

Neo: -

Age: Up-Up-Down

 PCYT2 1.765 - - - - 0.955 0.810 Mlig455_030848 {REF} {Length: 3688} {Pfam: Cytidylyltransferase-like [PF01467.28, score=150.5]; FAD synthetase [PF06574.14, score=20.2]} {Human: ENSG00000185813, PCYT2, phosphate cytidylyltransferase 2, ethanolamine, [RH, Score=435, Expect=3e-152]} {Mouse: ENSMUSG00000025137, Pcyt2, phosphate cytidylyltransferase 2, ethanolamine, [RH, Score=428, Expect=2e-149]} {Dmel: FBgn0032482, Pect, Phosphoethanolamine cytidylyltransferase, [RH, Score=431, Expect=1e-150]} {Celegans: WBGene00021352, Y37E3.11, [RH, Score=417, Expect=8e-146]} {Smed: dd_Smed_v6_3373_0_1, dd_Smed_v6_3373_0_1, [RH, Score=387, Expect=3e-134]} {RNA1509_15047} {RNA1310_17195.1} {RNA815_6039.1}
3. MligTC455_28102 120 2.49 Mlig455_000698

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_000698 {REF} {Length: 3639} {NoTransDecoderORF} {RNA1509_32637} {RNA1310_10807.1} {RNA815_15623}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA