TomoSeq data search

Data search

Results for MligTC455_43207

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_43207

196

4.09

Mlig455_057950

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.335

CACNB2

Mlig455_057950 {REF} {Length: 4468} {Pfam: Guanylate kinase [PF00625.23, score=145.2]; Voltage gated calcium channel subunit beta domain 4Aa N terminal [PF12052.10, score=25.7]} {Human: ENSG00000165995, CACNB2, calcium voltage-gated channel auxiliary subunit beta 2, [RH, Score=470, Expect=7e-160]; ENSG00000067191, CACNB1, calcium voltage-gated channel auxiliary subunit beta 1, [RH, Score=452, Expect=2e-154]} {Mouse: ENSMUSG00000057914, Cacnb2, calcium channel, voltage-dependent, beta 2 subunit, [RH, Score=461, Expect=2e-156]; ENSMUSG00000020882, Cacnb1, calcium channel, voltage-dependent, beta 1 subunit, [RH, Score=450, Expect=8e-154]; ENSMUSG00000017412, Cacnb4, calcium channel, voltage-dependent, beta 4 subunit, [RH, Score=441, Expect=2e-150]} {Dmel: FBgn0259822, Ca-beta, Ca2+-channel-protein-beta-subunit, [RH, Score=481, Expect=1e-163]} {Celegans: WBGene00000368, ccb-1, Calcium Channel, Beta subunit, [RH, Score=444, Expect=7e-152]} {Smed: dd_Smed_v6_9267_0_1, dd_Smed_v6_9267_0_1, [RH, Score=473, Expect=7e-163]} {RNA1509_14590} {RNA1310_10661} {RNA815_4109}

Cumulative graph for MligTC455_43207

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.975	2.726	0.45262	1.00000
RegionR2	0.964	2.726	0.33193	0.72379
RegionR3	0.665	2.726	0.45464	0.96563
RegionR4	0.721	2.726	0.49046	0.81749
RegionR5	0.506	2.726	0.56326	0.92230
RegionR6	0.66	2.726	0.46543	1.00000
RegionR7	0.963	2.726	0.33950	0.97588
RegionR8	-0.503	2.726	0.95731	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.877	2.726	0.99994	1.00000
RegenerationR2	-0.698	2.726	0.12125	0.54101
RegenerationR3	-1.559	2.726	0.00803	0.16425
RegenerationR4	-1.061	2.726	0.12500	0.53785
RegenerationR5	-0.303	2.726	0.54952	0.88559
RegenerationR6	-2.02	2.726	0.00271	0.05960
RegenerationBL	-5.631	2.726	0.00690	0.08069
RegenerationTP	0.035	2.726	0.97443	1.00000

Genes with expression patterns similar to MligTC455_43207

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_43207	196	4.09	Mlig455_057950	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.335	CACNB2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_057950 {REF} {Length: 4468} {Pfam: Guanylate kinase [PF00625.23, score=145.2]; Voltage gated calcium channel subunit beta domain 4Aa N terminal [PF12052.10, score=25.7]} {Human: ENSG00000165995, CACNB2, calcium voltage-gated channel auxiliary subunit beta 2, [RH, Score=470, Expect=7e-160]; ENSG00000067191, CACNB1, calcium voltage-gated channel auxiliary subunit beta 1, [RH, Score=452, Expect=2e-154]} {Mouse: ENSMUSG00000057914, Cacnb2, calcium channel, voltage-dependent, beta 2 subunit, [RH, Score=461, Expect=2e-156]; ENSMUSG00000020882, Cacnb1, calcium channel, voltage-dependent, beta 1 subunit, [RH, Score=450, Expect=8e-154]; ENSMUSG00000017412, Cacnb4, calcium channel, voltage-dependent, beta 4 subunit, [RH, Score=441, Expect=2e-150]} {Dmel: FBgn0259822, Ca-beta, Ca2+-channel-protein-beta-subunit, [RH, Score=481, Expect=1e-163]} {Celegans: WBGene00000368, ccb-1, Calcium Channel, Beta subunit, [RH, Score=444, Expect=7e-152]} {Smed: dd_Smed_v6_9267_0_1, dd_Smed_v6_9267_0_1, [RH, Score=473, Expect=7e-163]} {RNA1509_14590} {RNA1310_10661} {RNA815_4109}
2.	MligTC455_24438	158	3.3	Mlig455_003021	Neo: - Age: -		0.978	-	-	-	-	-	0.978	Mlig455_003021 {REF} {Length: 3818} {RNA1509_26898} {RNA1310_26663.1} {RNA815_11574}
3.	MligTC455_16896	61	1.28	Mlig455_020610	Neo: - Age: Up-Down-Down	FAT4	0.975	-	-	-	0.975	-	-	Mlig455_020610 {REF} {Length: 15340} {Pfam: Cadherin domain [PF00028.19, score=1102.3]; Cadherin-like [PF16184.7, score=69.7]; Cadherin-like [PF08266.14, score=53.4]; Cadherin prodomain like [PF08758.13, score=26.2]; Long Rib domain [PF18957.2, score=25.6]; EGF-like domain [PF00008.29, score=24.0]; Laminin G domain [PF00054.25, score=20.4]} {Human: ENSG00000196159, FAT4, FAT atypical cadherin 4, [RH, Score=1464, Expect=0.0]} {Mouse: ENSMUSG00000046743, Fat4, FAT atypical cadherin 4, [Score=1419, Expect=0.0]} {Dmel: FBgn0001075, ft, fat, [Score=732, Expect=0.0]} {Celegans: WBGene00019994, cdh-1, CaDHerin family, [Score=278, Expect=5e-74]} {Smed: dd_Smed_v6_12707_0_1, dd_Smed_v6_12707_0_1, [Score=309, Expect=2e-83]} {RNA1509_19257} {RNA1310_36936} {RNA815_35431}
4.	MligTC455_19193	147	3.07	Mlig455_007213	Neo: - Age: -	BFAR	0.966	-	-	-	-	0.966	-	Mlig455_007213 {REF} {Length: 2792} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=31.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.1]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.0]; zinc finger of C3HC4-type, RING [PF15227.8, score=29.7]; RING-type zinc-finger [PF13445.8, score=29.4]; Ring finger domain [PF13639.8, score=27.0]; zinc-RING finger domain [PF14634.8, score=25.5]; Prokaryotic RING finger family 4 [PF14447.8, score=22.2]; RING-H2 zinc finger domain [PF12678.9, score=19.9]} {Human: ENSG00000275618, BFAR, bifunctional apoptosis regulator, [RH, Score=49.3, Expect=7e-07]; ENSG00000103429, BFAR, bifunctional apoptosis regulator, [RH, Score=49.3, Expect=7e-07]} {Mouse: ENSMUSG00000022684, Bfar, bifunctional apoptosis regulator, [RH, Score=52.8, Expect=1e-08]; ENSMUSG00000057596, Trim30d, tripartite motif-containing 30D, [RH, Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_10019_0_1, dd_Smed_v6_10019_0_1, [Score=46.2, Expect=2e-06]} {RNA1509_42543, RNA1509_53684} {RNA1310_39360, RNA1509_42543} {RNA1509_42543, RNA815_20181}
5.	MligTC455_27890	11	0.22	Mlig455_070043	Neo: - Age: Up-Down-Up	ANK2	0.964	-	-	-	-	0.964	-	Mlig455_070043 {REF} {Length: 8028} {Pfam: UPA domain [PF17809.3, score=125.5]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=142, Expect=7e-33]; ENSG00000151150, ANK3, ankyrin 3, [Score=137, Expect=2e-31]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=142, Expect=4e-33]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=141, Expect=1e-32]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=122, Expect=4e-27]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=127, Expect=8e-29]} {Smed: dd_Smed_v6_3523_0_1, dd_Smed_v6_3523_0_1, [Score=128, Expect=3e-29]} {RNA1509_6268} {RNA1310_2477.1} {RNA815_5154}
6.	MligTC455_23195	326	6.79	Mlig455_041698	Neo: - Age: Down-Up-Down	SLC35C1	0.961	-	-	-	-	-	0.961	Mlig455_041698 {REF} {Length: 1648} {TRANSSPLICED} {Pfam: Triose-phosphate Transporter family [PF03151.18, score=69.7]; EamA-like transporter family [PF00892.22, score=30.9]} {Human: ENSG00000181830, SLC35C1, solute carrier family 35 member C1, [RH, Score=333, Expect=2e-112]} {Mouse: ENSMUSG00000049922, Slc35c1, solute carrier family 35, member C1, [Score=348, Expect=2e-118]} {Dmel: FBgn0265351, nac, neuronally altered carbohydrate, [Score=276, Expect=1e-90]} {Celegans: WBGene00008237, nstp-10, GDP-fucose transporter, [RH, Score=338, Expect=2e-114]} {Smed: dd_Smed_v6_12626_0_1, dd_Smed_v6_12626_0_1, [RH, Score=330, Expect=2e-112]} {RNA1509_16046} {RNA1310_14558.1} {RNA815_9070}
7.	MligTC455_41888	219	4.57	Mlig455_060565	Neo: - Age: -	EPB41L5	0.957	-	-	-	-	0.957	-	Mlig455_060565 {REF} {Length: 3067} {TRANSSPLICED} {Pfam: FERM N-terminal domain [PF09379.12, score=46.3]; FERM C-terminal PH-like domain [PF09380.12, score=36.7]; FERM central domain [PF00373.20, score=26.5]} {Human: ENSG00000115109, EPB41L5, erythrocyte membrane protein band 4.1 like 5, [Score=139, Expect=2e-34]} {Mouse: ENSMUSG00000026383, Epb41l5, erythrocyte membrane protein band 4.1 like 5, [Score=139, Expect=7e-35]} {Dmel: FBgn0085376, CG34347, [Score=139, Expect=8e-34]} {Celegans: WBGene00001489, frm-2, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=106, Expect=8e-24]} {Smed: dd_Smed_v6_10131_0_1, dd_Smed_v6_10131_0_1, [RH, Score=137, Expect=6e-34]} {RNA1509_51433} {RNA1310_4406, RNA1509_51433} {RNA1509_51433, RNA815_9005}
8.	MligTC455_26623	25	0.53	Mlig455_043418	Neo: - Age: Up-Down-Down		0.955	-	-	-	-	0.955	-	Mlig455_043418 {REF} {Length: 2322} {NoTransDecoderORF} {RNA1509_33654} {RNA1310_22830.1} {RNA815_20299}

Berezikov Lab - 2020-2021 © ERIBA