M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43289

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43289 226 4.70 Mlig455_069181

Neo: -

Age: -

 LMBRD2 Mlig455_069181 {REF} {Length: 2894} {TRANSSPLICED} {Pfam: LMBR1-like membrane protein [PF04791.18, score=445.5]} {Human: ENSG00000164187, LMBRD2, LMBR1 domain containing 2, [RH, Score=456, Expect=6e-151]} {Mouse: ENSMUSG00000116236, Lmbrd2, LMBR1 domain containing 2, [RH, Score=449, Expect=2e-148]; ENSMUSG00000039704, Lmbrd2, LMBR1 domain containing 2, [RH, Score=449, Expect=2e-148]} {Dmel: FBgn0037689, CG8135, [RH, Score=429, Expect=6e-141]} {Celegans: WBGene00008165, C47G2.4, LMBR1 domain-containing protein 2 homolog, [RH, Score=337, Expect=3e-106]} {Smed: dd_Smed_v6_8597_0_1, dd_Smed_v6_8597_0_1, [RH, Score=444, Expect=9e-147]} {RNA1509_11891} {RNA1310_7078.1} {RNA815_12918}

Cumulative graph for MligTC455_43289

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.147 2.914 0.93039 1.00000
RegionR2 0.13 2.914 0.87689 1.00000
RegionR3 -0.576 2.914 0.39430 0.92408
RegionR4 0.423 2.914 0.55962 0.87937
RegionR5 0.772 2.914 0.16817 0.43547
RegionR6 -0.148 2.914 0.82339 1.00000
RegionR7 -0.675 2.914 0.47536 1.00000
RegionR8 -0.074 2.914 0.94810 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.087 2.914 0.24843 0.96633
RegenerationR2 -0.284 2.914 0.67665 0.94775
RegenerationR3 0.273 2.914 0.73224 0.95858
RegenerationR4 -1.464 2.914 0.05455 0.37569
RegenerationR5 -0.686 2.914 0.32172 0.74503
RegenerationR6 0.032 2.914 0.97013 1.00000
RegenerationBL 0.216 2.914 0.81360 1.00000
RegenerationTP 0.198 2.914 0.84771 1.00000


Genes with expression patterns similar to MligTC455_43289

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43289 226 4.7 Mlig455_069181

Neo: -

Age: -

 LMBRD2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_069181 {REF} {Length: 2894} {TRANSSPLICED} {Pfam: LMBR1-like membrane protein [PF04791.18, score=445.5]} {Human: ENSG00000164187, LMBRD2, LMBR1 domain containing 2, [RH, Score=456, Expect=6e-151]} {Mouse: ENSMUSG00000116236, Lmbrd2, LMBR1 domain containing 2, [RH, Score=449, Expect=2e-148]; ENSMUSG00000039704, Lmbrd2, LMBR1 domain containing 2, [RH, Score=449, Expect=2e-148]} {Dmel: FBgn0037689, CG8135, [RH, Score=429, Expect=6e-141]} {Celegans: WBGene00008165, C47G2.4, LMBR1 domain-containing protein 2 homolog, [RH, Score=337, Expect=3e-106]} {Smed: dd_Smed_v6_8597_0_1, dd_Smed_v6_8597_0_1, [RH, Score=444, Expect=9e-147]} {RNA1509_11891} {RNA1310_7078.1} {RNA815_12918}
2. MligTC455_19406 693 14.43 Mlig455_021525

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 2.557

Region-enriched R4: 1.438/0.00080

 FKBP4 0.968 - - 0.968 - - - Mlig455_021525 {REF} {Length: 1969} {TRANSSPLICED} {Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase [PF00254.30, score=58.2]; Tetratricopeptide repeat [PF00515.30, score=28.7]; Tetratricopeptide repeat [PF07719.19, score=24.2]} {Human: ENSG00000004478, FKBP4, FK506 binding protein 4, [Score=221, Expect=2e-65]} {Mouse: ENSMUSG00000030357, Fkbp4, FK506 binding protein 4, [Score=222, Expect=8e-66]} {Dmel: FBgn0029174, FKBP59, FK506-binding protein FKBP59, [Score=158, Expect=2e-42]} {Celegans: WBGene00001431, fkb-6, Peptidylprolyl isomerase, [Score=149, Expect=2e-39]} {Smed: dd_Smed_v6_1921_0_1, dd_Smed_v6_1921_0_1, [Score=171, Expect=1e-47]} {RNA1509_11025, RNA1509_29794} {RNA1310_14091, RNA1509_11025} {RNA1509_11025, RNA815_5078}
3. MligTC455_40983 822 17.13 Mlig455_014763, Mlig455_014822

Neo: -

Age: -

 RPUSD2 0.956 - - - - - 0.956

Mlig455_014763 {REF} {Length: 1287} {TRANSSPLICED} {Pfam: RNA pseudouridylate synthase [PF00849.24, score=97.8]} {Human: ENSG00000166133, RPUSD2, RNA pseudouridylate synthase domain containing 2, [RH, Score=256, Expect=7e-81]} {Mouse: ENSMUSG00000027324, Rpusd2, RNA pseudouridylate synthase domain containing 2, [Score=266, Expect=5e-84]} {Dmel: FBgn0032256, RluA-2, [Score=269, Expect=2e-85]} {Celegans: WBGene00019498, K07E8.7, Pseudouridine synthase, [Score=187, Expect=5e-56]} {Smed: dd_Smed_v6_12745_0_4, dd_Smed_v6_12745_0_4, [Score=248, Expect=4e-78]} {RNA1509_50690} {RNA1310_18279} {RNA815_7747}

Mlig455_014822 {REF} {Length: 1626} {TRANSSPLICED} {Pfam: RNA pseudouridylate synthase [PF00849.24, score=95.1]} {Human: ENSG00000166133, RPUSD2, RNA pseudouridylate synthase domain containing 2, [RH, Score=302, Expect=2e-96]} {Mouse: ENSMUSG00000027324, Rpusd2, RNA pseudouridylate synthase domain containing 2, [RH, Score=314, Expect=5e-101]} {Dmel: FBgn0032256, RluA-2, [RH, Score=326, Expect=6e-106]} {Celegans: WBGene00019498, K07E8.7, Pseudouridine synthase, [RH, Score=220, Expect=2e-66]} {Smed: dd_Smed_v6_12745_0_4, dd_Smed_v6_12745_0_4, [RH, Score=286, Expect=2e-91]} {RNA1509_25865, RNA1509_32103} {RNA1310_18279, RNA1509_25865, RNA1509_32103} {RNA1509_25865, RNA1509_32103, RNA815_7747}
4. MligTC455_06690 104 2.16 Mlig455_037231

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_037231 {REF} {Length: 1227} {RNA1509_21160} {RNA1310_6052} {RNA815_47286}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA