M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43387

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43387 155 3.23 Mlig455_049464

Neo: Irradiation

Age: -

 DHPS Mlig455_049464 {REF} {Length: 1960} {TRANSSPLICED} {Pfam: Deoxyhypusine synthase [PF01916.19, score=404.8]} {Human: ENSG00000095059, DHPS, deoxyhypusine synthase, [RH, Score=467, Expect=5e-165]} {Mouse: ENSMUSG00000060038, Dhps, deoxyhypusine synthase, [RH, Score=461, Expect=6e-163]} {Dmel: FBgn0035854, CG8005, [RH, Score=445, Expect=1e-156]} {Celegans: WBGene00012460, dhps-1, Deoxyhypusine synthase, [RH, Score=413, Expect=3e-144]} {Smed: dd_Smed_v6_12987_0_1, dd_Smed_v6_12987_0_1, [RH, Score=437, Expect=5e-154]} {RNA1509_14795} {RNA1310_24686.1} {RNA815_10319}

Cumulative graph for MligTC455_43387

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.087 2.448 0.51431 1.00000
RegionR2 0.02 2.448 0.97459 1.00000
RegionR3 0.625 2.448 0.24985 0.79368
RegionR4 -1.059 2.448 0.17345 0.43860
RegionR5 0.67 2.448 0.16019 0.42120
RegionR6 0.012 2.448 0.98013 1.00000
RegionR7 -0.48 2.448 0.63118 1.00000
RegionR8 1.299 2.448 0.16069 0.72552

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.008 2.448 0.63990 1.00000
RegenerationR2 1.146 2.448 0.12129 0.54101
RegenerationR3 -0.664 2.448 0.39420 0.79877
RegenerationR4 -0.383 2.448 0.64064 0.92802
RegenerationR5 -0.842 2.448 0.20130 0.63370
RegenerationR6 0.259 2.448 0.73814 0.94609
RegenerationBL 0.063 2.448 0.95486 1.00000
RegenerationTP -0.24 2.448 0.83466 1.00000


Genes with expression patterns similar to MligTC455_43387

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43387 155 3.23 Mlig455_049464

Neo: Irradiation

Age: -

 DHPS 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_049464 {REF} {Length: 1960} {TRANSSPLICED} {Pfam: Deoxyhypusine synthase [PF01916.19, score=404.8]} {Human: ENSG00000095059, DHPS, deoxyhypusine synthase, [RH, Score=467, Expect=5e-165]} {Mouse: ENSMUSG00000060038, Dhps, deoxyhypusine synthase, [RH, Score=461, Expect=6e-163]} {Dmel: FBgn0035854, CG8005, [RH, Score=445, Expect=1e-156]} {Celegans: WBGene00012460, dhps-1, Deoxyhypusine synthase, [RH, Score=413, Expect=3e-144]} {Smed: dd_Smed_v6_12987_0_1, dd_Smed_v6_12987_0_1, [RH, Score=437, Expect=5e-154]} {RNA1509_14795} {RNA1310_24686.1} {RNA815_10319}
2. MligTC455_07970 56 1.17 Mlig455_033539

Neo: -

Age: -

 ZNF142 2.488 0.725 - - 0.965 - 0.798 Mlig455_033539 {REF} {Length: 3927} {Pfam: C2H2-type zinc-finger domain [PF13909.8, score=51.2]; Zinc finger, C2H2 type [PF00096.28, score=45.1]; Zinc-finger double domain [PF13465.8, score=44.1]; C2H2-type zinc finger [PF13894.8, score=19.6]} {Human: ENSG00000115568, ZNF142, zinc finger protein 142, [Score=107, Expect=2e-23]} {Mouse: ENSMUSG00000026135, Zfp142, zinc finger protein 142, [Score=80.9, Expect=3e-15]; ENSMUSG00000029249, Rest, RE1-silencing transcription factor, [Score=79.3, Expect=8e-15]} {Dmel: FBgn0001180, hb, hunchback, [RH, Score=189, Expect=4e-51]} {Celegans: WBGene00001824, hbl-1, Hunchback-like protein, [RH, Score=174, Expect=2e-45]} {Smed: dd_Smed_v6_47627_0_1, dd_Smed_v6_47627_0_1, [Score=296, Expect=9e-94]} {RNA1310_53058} {RNA815_35691}
3. MligTC455_37350 54 1.12 Mlig455_052436

Neo: -

Age: -

 1.841 - - - 0.967 - 0.874 Mlig455_052436 {REF} {Length: 3228} {Pfam: PHD-finger [PF00628.31, score=24.5]} {RNA1509_53488} {RNA1310_40766}
4. MligTC455_02511 241 5.03 Mlig455_010299, Mlig455_065662

Neo: -

Age: Down-Up-Up

Region-specific R4: 4.092

Region-enriched R4: 4.034/0.00000

 UBC 0.988 - - - 0.988 - -

Mlig455_010299 {REF} {Length: 3709} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=24.3]} {RNA1509_22361} {RNA1310_28812} {RNA815_32600}

Mlig455_065662 {REF} {Length: 3304} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=33.4]; Ubiquitin family [PF00240.25, score=24.4]} {Human: ENSG00000150991, UBC, ubiquitin C, [Score=58.2, Expect=4e-10]; ENSG00000170315, UBB, ubiquitin B, [Score=57.8, Expect=1e-09]} {Mouse: ENSMUSG00000008348, Ubc, ubiquitin C, [Score=57.8, Expect=2e-09]; ENSMUSG00000019505, Ubb, ubiquitin B, [Score=57.4, Expect=3e-09]} {Dmel: FBgn0086558, Ubi-p5E, Ubiquitin-5E, [Score=57.4, Expect=7e-09]} {Celegans: WBGene00006728, ubq-2, Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40, [Score=54.3, Expect=4e-09]} {Smed: dd_Smed_v6_458_0_1, dd_Smed_v6_458_0_1, [Score=54.7, Expect=9e-10]} {RNA1509_22361} {RNA1310_28812} {RNA815_35171}
5. MligTC455_47691 103 2.14 Mlig455_046561

Neo: -

Age: -

 UBTD2 0.963 - - - - 0.963 - Mlig455_046561 {REF} {Length: 3785} {Pfam: Ubiquitin-binding domain [PF16455.7, score=121.7]; Ubiquitin family [PF00240.25, score=33.5]} {Human: ENSG00000168246, UBTD2, ubiquitin domain containing 2, [RH, Score=218, Expect=9e-71]} {Mouse: ENSMUSG00000044949, Ubtd2, ubiquitin domain containing 2, [RH, Score=219, Expect=2e-71]} {Dmel: FBgn0264712, CG1172, [RH, Score=194, Expect=2e-61]} {Smed: dd_Smed_v6_3009_0_1, dd_Smed_v6_3009_0_1, [RH, Score=198, Expect=4e-63]} {RNA1509_42408} {RNA1310_33971} {RNA815_34971}
6. MligTC455_10256 26 0.54 Mlig455_023710

Neo: -

Age: -

Region-enriched R4: 6.099/0.01056

 0.962 - - - 0.962 - - Mlig455_023710 {REF} {Length: 667} {NoTransDecoderORF} {RNA1509_15298} {RNA1310_12626} {RNA815_3745}
7. MligTC455_40511 101 2.1 Mlig455_069739

Neo: -

Age: -

 GTDC1 0.96 - - - - - 0.960 Mlig455_069739 {REF} {Length: 1907} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3524) [PF12038.10, score=201.7]; Glycosyl transferases group 1 [PF00534.22, score=37.1]} {Human: ENSG00000121964, GTDC1, glycosyltransferase like domain containing 1, [RH, Score=291, Expect=2e-93]} {Mouse: ENSMUSG00000036890, Gtdc1, glycosyltransferase-like domain containing 1, [RH, Score=295, Expect=6e-95]} {Dmel: FBgn0030700, CG15914, [RH, Score=294, Expect=7e-96]} {Smed: dd_Smed_v6_17907_0_1, dd_Smed_v6_17907_0_1, [RH, Score=269, Expect=2e-86]} {RNA1509_49025} {RNA1310_12650.1} {RNA815_12472}
8. MligTC455_48974 124 2.58 Mlig455_055974

Neo: -

Age: -

Regeneration-upregulated BL: 5.064

Regeneration-enriched BL: 5.064

 0.959 - - - - - 0.959 Mlig455_055974 {REF} {Length: 739} {NoTransDecoderORF} {RNA1310_50966} {RNA815_42094}
9. MligTC455_15343 177 3.68 Mlig455_028996

Neo: -

Age: -

Region-enriched R8: 3.572/0.01201

 PRKG1 0.957 - - - - 0.957 - Mlig455_028996 {REF} {Length: 3220} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=128.3]; Protein kinase domain [PF00069.27, score=57.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=32.8]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=274, Expect=2e-81]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=273, Expect=3e-81]} {Dmel: FBgn0000721, for, foraging, [Score=286, Expect=7e-86]} {Celegans: WBGene00001173, egl-4, cGMP-dependent protein kinase egl-4, [Score=244, Expect=7e-73]} {Smed: dd_Smed_v6_16434_0_1, dd_Smed_v6_16434_0_1, [Score=326, Expect=8e-100]} {RNA1509_32231} {RNA1310_18553.1} {RNA815_13824}
10. MligTC455_52776 568 11.83 Mlig455_014951, Mlig455_045141, Mlig455_045176

Neo: -

Age: -

 FUT6 0.956 - - - 0.956 - -

Mlig455_014951 {REF} {Length: 3156} {Pfam: Glycosyltransferase family 10 (fucosyltransferase) C-term [PF00852.21, score=171.0]; Fucosyltransferase, N-terminal [PF17039.7, score=43.2]} {Human: ENSG00000156413, FUT6, fucosyltransferase 6, [Score=123, Expect=4e-31]; ENSG00000130383, FUT5, fucosyltransferase 5, [Score=121, Expect=4e-30]; ENSG00000180549, FUT7, fucosyltransferase 7, [Score=120, Expect=4e-30]; ENSG00000171124, FUT3, fucosyltransferase 3 (Lewis blood group), [Score=117, Expect=6e-29]} {Mouse: ENSMUSG00000036587, Fut7, fucosyltransferase 7, [Score=123, Expect=3e-31]} {Dmel: FBgn0036485, FucTA, [Score=140, Expect=2e-36]} {Celegans: WBGene00001505, fut-1, Alpha-(1,3)-fucosyltransferase fut-1, [Score=110, Expect=3e-26]} {Smed: dd_Smed_v6_8368_0_1, dd_Smed_v6_8368_0_1, [Score=140, Expect=6e-37]} {RNA1509_53629} {RNA1310_21454.2, RNA1509_53629} {RNA1509_53629, RNA815_20125}

Mlig455_045141 {REF} {Length: 2058} {Pfam: Glycosyltransferase family 10 (fucosyltransferase) C-term [PF00852.21, score=171.7]; Fucosyltransferase, N-terminal [PF17039.7, score=44.3]} {Human: ENSG00000156413, FUT6, fucosyltransferase 6, [Score=125, Expect=6e-32]; ENSG00000180549, FUT7, fucosyltransferase 7, [Score=124, Expect=2e-31]; ENSG00000130383, FUT5, fucosyltransferase 5, [Score=123, Expect=5e-31]; ENSG00000171124, FUT3, fucosyltransferase 3 (Lewis blood group), [Score=120, Expect=7e-30]} {Mouse: ENSMUSG00000036587, Fut7, fucosyltransferase 7, [Score=127, Expect=1e-32]} {Dmel: FBgn0036485, FucTA, [Score=137, Expect=1e-35]} {Celegans: WBGene00001505, fut-1, Alpha-(1,3)-fucosyltransferase fut-1, [Score=109, Expect=3e-26]} {Smed: dd_Smed_v6_8368_0_1, dd_Smed_v6_8368_0_1, [Score=140, Expect=5e-37]} {RNA1509_53629} {RNA1310_21454.2} {RNA815_20125}

Mlig455_045176 {REF} {Length: 3201} {Pfam: Glycosyltransferase family 10 (fucosyltransferase) C-term [PF00852.21, score=171.7]; Fucosyltransferase, N-terminal [PF17039.7, score=44.3]} {Human: ENSG00000156413, FUT6, fucosyltransferase 6, [Score=125, Expect=6e-32]; ENSG00000180549, FUT7, fucosyltransferase 7, [Score=124, Expect=2e-31]; ENSG00000130383, FUT5, fucosyltransferase 5, [Score=123, Expect=5e-31]; ENSG00000171124, FUT3, fucosyltransferase 3 (Lewis blood group), [Score=120, Expect=7e-30]} {Mouse: ENSMUSG00000036587, Fut7, fucosyltransferase 7, [Score=127, Expect=1e-32]} {Dmel: FBgn0036485, FucTA, [Score=137, Expect=1e-35]} {Celegans: WBGene00001505, fut-1, Alpha-(1,3)-fucosyltransferase fut-1, [Score=109, Expect=3e-26]} {Smed: dd_Smed_v6_8368_0_1, dd_Smed_v6_8368_0_1, [Score=140, Expect=5e-37]} {RNA1509_53629} {RNA1310_21454.2} {RNA815_20125}
11. MligTC455_24455 131 2.72 Mlig455_006310

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_006310 {REF} {Length: 2448} {RNA1509_7020} {RNA1310_76552} {RNA815_41542}
12. MligTC455_47484 75 1.56 Mlig455_036216

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.028

 0.951 - - - - - 0.951 Mlig455_036216 {REF} {Length: 2801} {Celegans: WBGene00015662, C10A4.1, [Score=63.9, Expect=2e-10]} {RNA1509_51858} {RNA1310_11552} {RNA815_41270}
13. MligTC455_40981 59 1.24 Mlig455_056326

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_056326 {REF} {Length: 1133} {NoTransDecoderORF} {RNA1509_22348} {RNA1310_55519} {RNA815_14259}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA