M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43515

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43515 37 0.76 Mlig455_028938

Neo: -

Age: -

Region-enriched R4: 5.640/0.02017

 Mlig455_028938 {REF} {Length: 2469} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_41781} {RNA815_21314}

Cumulative graph for MligTC455_43515

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 5.442 1.16 0.99994 1.00000
RegionR2 -4.27 1.16 0.99959 1.00000
RegionR3 -2.852 1.16 0.99965 1.00000
RegionR4 5.64 1.16 0.00234 0.02017
RegionR5 1.507 1.16 0.13410 0.37378
RegionR6 -0.47 1.16 0.66444 1.00000
RegionR7 -2.521 1.16 0.99960 1.00000
RegionR8 -2.477 1.16 0.99962 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.128 1.16 0.99989 1.00000
RegenerationR2 4.702 1.16 0.00044 0.02873
RegenerationR3 2.626 1.16 0.20271 0.63815
RegenerationR4 -1.79 1.16 0.16369 0.59734
RegenerationR5 -1.596 1.16 0.15199 0.57070
RegenerationR6 2.409 1.16 0.12081 0.42767
RegenerationBL 2.743 1.16 0.22344 0.57236
RegenerationTP 1.179 1.16 0.62448 0.97434


Genes with expression patterns similar to MligTC455_43515

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43515 37 0.76 Mlig455_028938

Neo: -

Age: -

Region-enriched R4: 5.640/0.02017

 3 - - - 1.000 1.000 1.000 Mlig455_028938 {REF} {Length: 2469} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_41781} {RNA815_21314}
2. MligTC455_39819 11 0.24 Mlig455_020402

Neo: -

Age: -

 1.707 - - - - 0.954 0.753 Mlig455_020402 {REF} {Length: 1516}
3. MligTC455_38578 34 0.71 Mlig455_039970, Mlig455_070840

Neo: -

Age: -

 0.97 - - - - 0.970 -

Mlig455_039970 {REF} {Length: 1523} {TRANSSPLICED} {Pfam: Protein phosphatase inhibitor 2 (IPP-2) [PF04979.16, score=21.3]} {RNA1310_21615.2} {RNA815_35576}

Mlig455_070840 {REF} {Length: 1809} {TRANSSPLICED} {Pfam: Protein phosphatase inhibitor 2 (IPP-2) [PF04979.16, score=21.3]} {RNA1310_21615.1} {RNA815_35576}
4. MligTC455_10770 9 0.19 Mlig455_069191

Neo: -

Age: -

 NEFM 0.965 - - - - 0.965 - Mlig455_069191 {REF} {Length: 2284} {Human: ENSG00000104722, NEFM, neurofilament medium, [Score=50.8, Expect=6e-06]}
5. MligTC455_24254 36 0.75 Mlig455_022833, Mlig455_052911

Neo: -

Age: -

 0.965 - - - - 0.965 -

Mlig455_022833 {REF} {Length: 3826} {RNA1509_37106} {RNA1310_20119} {RNA815_32661}

Mlig455_052911 {REF} {Length: 373} {NoTransDecoderORF} {RNA1509_43679} {RNA1310_11574} {RNA815_11715.1}
6. MligTC455_09723 43 0.89 Mlig455_048052, Mlig455_048071

Neo: -

Age: Up-Down-Down

 0.964 - - - - 0.964 -

Mlig455_048052 {REF} {Length: 3592} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=110.8]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=57.6]; Glycine rich protein family [PF07172.13, score=21.2]} {Dmel: FBgn0033579, CG13229, [Score=121, Expect=1e-29]} {Celegans: WBGene00016428, dmsr-7, DroMyoSuppressin Receptor related, [Score=135, Expect=2e-34]} {Smed: dd_Smed_v6_24203_0_1, dd_Smed_v6_24203_0_1, [Score=204, Expect=1e-60]} {RNA1509_18576} {RNA1310_81440} {RNA815_16348}

Mlig455_048071 {REF} {Length: 4002} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=110.0]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=58.2]; Glycine rich protein family [PF07172.13, score=21.9]} {Dmel: FBgn0033579, CG13229, [Score=119, Expect=5e-29]} {Celegans: WBGene00016428, dmsr-7, DroMyoSuppressin Receptor related, [Score=131, Expect=4e-33]} {Smed: dd_Smed_v6_24203_0_1, dd_Smed_v6_24203_0_1, [Score=202, Expect=8e-60]} {RNA1509_18576} {RNA1310_81440} {RNA815_16348}
7. MligTC455_08170 389 8.1 Mlig455_014125, Mlig455_014135

Neo: -

Age: -

 NOTCH1, POMGNT1 0.961 - - - - 0.961 -

Mlig455_014125 {REF} {Length: 4033} {Pfam: Calcium-binding EGF domain [PF07645.17, score=46.0]; EGF-like domain [PF00008.29, score=29.6]; Coagulation Factor Xa inhibitory site [PF14670.8, score=22.8]} {Human: ENSG00000085998, POMGNT1, protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-), [Score=103, Expect=9e-22]} {Mouse: ENSMUSG00000028700, Pomgnt1, protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase, [Score=112, Expect=1e-24]} {Dmel: FBgn0004647, N, Notch, [Score=73.2, Expect=2e-12]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=62.0, Expect=3e-09]} {Smed: dd_Smed_v6_10716_0_1, dd_Smed_v6_10716_0_1, [Score=152, Expect=3e-37]} {RNA1509_33760} {RNA1310_5100.1} {RNA815_30516}

Mlig455_014135 {REF} {Length: 2813} {Pfam: Calcium-binding EGF domain [PF07645.17, score=122.7]; EGF-like domain [PF00008.29, score=113.6]; Coagulation Factor Xa inhibitory site [PF14670.8, score=81.1]; Human growth factor-like EGF [PF12661.9, score=79.2]; Complement Clr-like EGF-like [PF12662.9, score=58.9]; EGF-like domain [PF07974.15, score=50.3]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=196, Expect=1e-50]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=201, Expect=2e-52]} {Dmel: FBgn0004647, N, Notch, [Score=158, Expect=4e-39]} {Celegans: WBGene00003001, lin-12, [Score=124, Expect=1e-28]} {Smed: dd_Smed_v6_10716_0_1, dd_Smed_v6_10716_0_1, [RH, Score=344, Expect=3e-104]} {RNA1509_33760} {RNA1310_5100.1, RNA1509_33760} {RNA1509_33760, RNA815_30516}
8. MligTC455_30161 42 0.88 Mlig455_056962

Neo: -

Age: Up-Down-Up

 0.959 - - - - - 0.959 Mlig455_056962 {REF} {Length: 3436} {Pfam: Mab-21 protein [PF03281.16, score=30.3]} {RNA1509_49065} {RNA1310_3906.1} {RNA815_1664.1}
9. MligTC455_13206 10 0.2 Mlig455_018601, Mlig455_018615

Neo: -

Age: -

 0.956 - - - - 0.956 -

Mlig455_018601 {REF} {Length: 1042} {NoTransDecoderORF} {RNA1310_100887}

Mlig455_018615 {REF} {Length: 1012} {NoTransDecoderORF} {RNA1310_100887}
10. MligTC455_16042 45 0.95 Mlig455_000892

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_000892 {REF} {Length: 487} {NoTransDecoderORF} {RNA1310_142782}
11. MligTC455_13973 6 0.13 Mlig455_062040

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_062040 {REF} {Length: 634} {NoTransDecoderORF} {RNA1509_47371}
12. MligTC455_14143 12 0.25 Mlig455_013538

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_013538 {REF} {Length: 951} {NoTransDecoderORF} {RNA1509_26163} {RNA1310_103321} {RNA815_47548}
13. MligTC455_32102 22 0.45 Mlig455_036933

Neo: -

Age: Up-Down-Down

 0.955 - - - - 0.955 - Mlig455_036933 {REF} {Length: 2307} {RNA1509_41399} {RNA1310_15329} {RNA815_6647}
14. MligTC455_52002 18 0.37 Mlig455_015922

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_015922 {REF} {Length: 3702} {RNA1310_60405} {RNA815_40963}
15. MligTC455_02977 9 0.19 Mlig455_030233, Mlig455_068012

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_030233 {REF} {Length: 1705} {Pfam: Glycine rich protein [PF12810.9, score=28.6]} {RNA1310_95913}

Mlig455_068012 {REF} {Length: 1348} {Pfam: Glycine rich protein [PF12810.9, score=29.2]} {RNA1310_95913}
16. MligTC455_18043 7 0.15 Mlig455_057278

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_057278 {REF} {Length: 635} {NoTransDecoderORF} {RNA1509_36910} {RNA1310_134608}
17. MligTC455_52792 229 4.77 Mlig455_038012

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_038012 {REF} {Length: 3785} {TRANSSPLICED} {Pfam: Vacuolar sorting 38 and autophagy-related subunit 14 [PF10186.11, score=24.9]} {RNA1509_42202, RNA1509_55892, RNA1509_59923} {RNA1310_23418.2, RNA1509_42202, RNA1509_55892, RNA1509_59923} {RNA1509_42202, RNA1509_55892, RNA1509_59923, RNA815_10560}
18. MligTC455_08714 6 0.12 Mlig455_012167

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_012167 {REF} {Length: 312} {NoTransDecoderORF} {RNA1509_29268} {RNA1310_107364} {RNA815_51387}
19. MligTC455_12302 137 2.85 Mlig455_001240

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_001240 {REF} {Length: 441} {NoTransDecoderORF} {RNA1509_35425} {RNA1310_32078} {RNA815_40733}
20. MligTC455_17645 48 1 Mlig455_008070

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.181

 0.95 - - - - 0.950 - Mlig455_008070 {REF} {Length: 1924} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=20.9]} {Smed: dd_Smed_v6_25359_0_1, dd_Smed_v6_25359_0_1, [Score=66.2, Expect=3e-12]} {RNA1509_7841} {RNA1310_25567} {RNA815_6213}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA