TomoSeq data search

Data search

Results for MligTC455_43544

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_43544	1104	23.00	Mlig455_057360, Mlig455_059569	Neo: - Age: -	RHOT1	Mlig455_057360 {REF} {Length: 3067} {Pfam: EF hand associated [PF08356.14, score=99.2]; Ras family [PF00071.24, score=70.8]; EF hand associated [PF08355.14, score=54.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=39.2]; EF-hand domain pair [PF13499.8, score=35.5]; EF-hand domain [PF13405.8, score=32.3]; EF hand [PF00036.34, score=31.2]; Signal recognition particle receptor beta subunit [PF09439.12, score=24.3]} {Human: ENSG00000126858, RHOT1, ras homolog family member T1, [Score=498, Expect=1e-170]} {Mouse: ENSMUSG00000017686, Rhot1, ras homolog family member T1, [Score=493, Expect=1e-168]} {Dmel: FBgn0039140, Miro, Mitochondrial Rho, [Score=467, Expect=2e-158]} {Celegans: WBGene00019544, miro-1, Mitochondrial Rho GTPase 1, [Score=419, Expect=3e-140]} {Smed: dd_Smed_v6_3990_0_1, dd_Smed_v6_3990_0_1, [Score=520, Expect=9e-180]} {RNA1509_8291} {RNA1310_4667.1} {RNA815_1381.1} Mlig455_059569 {REF} {Length: 3245} {Pfam: Ras family [PF00071.24, score=98.3]; EF hand associated [PF08356.14, score=98.2]; EF hand associated [PF08355.14, score=72.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=45.2]; EF-hand domain pair [PF13499.8, score=35.2]; EF-hand domain [PF13405.8, score=32.0]; EF hand [PF00036.34, score=30.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=25.2]} {Human: ENSG00000126858, RHOT1, ras homolog family member T1, [RH, Score=584, Expect=0.0]} {Mouse: ENSMUSG00000017686, Rhot1, ras homolog family member T1, [RH, Score=581, Expect=0.0]} {Dmel: FBgn0039140, Miro, Mitochondrial Rho, [RH, Score=555, Expect=0.0]} {Celegans: WBGene00019544, miro-1, Mitochondrial Rho GTPase 1, [RH, Score=514, Expect=2e-176]} {Smed: dd_Smed_v6_3990_0_1, dd_Smed_v6_3990_0_1, [RH, Score=647, Expect=0.0]} {RNA1509_8291} {RNA1310_4667.1, RNA1509_8291} {RNA1509_8291, RNA815_1381.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_43544

1104

23.00

Mlig455_057360, Mlig455_059569

Neo: -

Age: -

RHOT1

Mlig455_057360 {REF} {Length: 3067} {Pfam: EF hand associated [PF08356.14, score=99.2]; Ras family [PF00071.24, score=70.8]; EF hand associated [PF08355.14, score=54.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=39.2]; EF-hand domain pair [PF13499.8, score=35.5]; EF-hand domain [PF13405.8, score=32.3]; EF hand [PF00036.34, score=31.2]; Signal recognition particle receptor beta subunit [PF09439.12, score=24.3]} {Human: ENSG00000126858, RHOT1, ras homolog family member T1, [Score=498, Expect=1e-170]} {Mouse: ENSMUSG00000017686, Rhot1, ras homolog family member T1, [Score=493, Expect=1e-168]} {Dmel: FBgn0039140, Miro, Mitochondrial Rho, [Score=467, Expect=2e-158]} {Celegans: WBGene00019544, miro-1, Mitochondrial Rho GTPase 1, [Score=419, Expect=3e-140]} {Smed: dd_Smed_v6_3990_0_1, dd_Smed_v6_3990_0_1, [Score=520, Expect=9e-180]} {RNA1509_8291} {RNA1310_4667.1} {RNA815_1381.1}

Mlig455_059569 {REF} {Length: 3245} {Pfam: Ras family [PF00071.24, score=98.3]; EF hand associated [PF08356.14, score=98.2]; EF hand associated [PF08355.14, score=72.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=45.2]; EF-hand domain pair [PF13499.8, score=35.2]; EF-hand domain [PF13405.8, score=32.0]; EF hand [PF00036.34, score=30.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=25.2]} {Human: ENSG00000126858, RHOT1, ras homolog family member T1, [RH, Score=584, Expect=0.0]} {Mouse: ENSMUSG00000017686, Rhot1, ras homolog family member T1, [RH, Score=581, Expect=0.0]} {Dmel: FBgn0039140, Miro, Mitochondrial Rho, [RH, Score=555, Expect=0.0]} {Celegans: WBGene00019544, miro-1, Mitochondrial Rho GTPase 1, [RH, Score=514, Expect=2e-176]} {Smed: dd_Smed_v6_3990_0_1, dd_Smed_v6_3990_0_1, [RH, Score=647, Expect=0.0]} {RNA1509_8291} {RNA1310_4667.1, RNA1509_8291} {RNA1509_8291, RNA815_1381.1}

Cumulative graph for MligTC455_43544

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.241	4.849	0.07950	0.61697
RegionR2	0.816	4.849	0.07519	0.33565
RegionR3	0.071	4.849	0.85197	1.00000
RegionR4	0.089	4.849	0.83781	1.00000
RegionR5	0.316	4.849	0.36436	0.71678
RegionR6	0.312	4.849	0.40964	0.97893
RegionR7	0.585	4.849	0.19307	0.79808
RegionR8	0.052	4.849	0.92529	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.724	4.849	0.73466	1.00000
RegenerationR2	-0.001	4.849	0.99851	1.00000
RegenerationR3	0.148	4.849	0.73071	0.95810
RegenerationR4	-0.011	4.849	0.97817	1.00000
RegenerationR5	0.516	4.849	0.19475	0.62645
RegenerationR6	0.427	4.849	0.30904	0.65719
RegenerationBL	0.575	4.849	0.21682	0.56296
RegenerationTP	0.954	4.849	0.04677	0.35713

Genes with expression patterns similar to MligTC455_43544

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_43544	1104	23	Mlig455_057360, Mlig455_059569	Neo: - Age: -	RHOT1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_057360 {REF} {Length: 3067} {Pfam: EF hand associated [PF08356.14, score=99.2]; Ras family [PF00071.24, score=70.8]; EF hand associated [PF08355.14, score=54.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=39.2]; EF-hand domain pair [PF13499.8, score=35.5]; EF-hand domain [PF13405.8, score=32.3]; EF hand [PF00036.34, score=31.2]; Signal recognition particle receptor beta subunit [PF09439.12, score=24.3]} {Human: ENSG00000126858, RHOT1, ras homolog family member T1, [Score=498, Expect=1e-170]} {Mouse: ENSMUSG00000017686, Rhot1, ras homolog family member T1, [Score=493, Expect=1e-168]} {Dmel: FBgn0039140, Miro, Mitochondrial Rho, [Score=467, Expect=2e-158]} {Celegans: WBGene00019544, miro-1, Mitochondrial Rho GTPase 1, [Score=419, Expect=3e-140]} {Smed: dd_Smed_v6_3990_0_1, dd_Smed_v6_3990_0_1, [Score=520, Expect=9e-180]} {RNA1509_8291} {RNA1310_4667.1} {RNA815_1381.1} Mlig455_059569 {REF} {Length: 3245} {Pfam: Ras family [PF00071.24, score=98.3]; EF hand associated [PF08356.14, score=98.2]; EF hand associated [PF08355.14, score=72.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=45.2]; EF-hand domain pair [PF13499.8, score=35.2]; EF-hand domain [PF13405.8, score=32.0]; EF hand [PF00036.34, score=30.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=25.2]} {Human: ENSG00000126858, RHOT1, ras homolog family member T1, [RH, Score=584, Expect=0.0]} {Mouse: ENSMUSG00000017686, Rhot1, ras homolog family member T1, [RH, Score=581, Expect=0.0]} {Dmel: FBgn0039140, Miro, Mitochondrial Rho, [RH, Score=555, Expect=0.0]} {Celegans: WBGene00019544, miro-1, Mitochondrial Rho GTPase 1, [RH, Score=514, Expect=2e-176]} {Smed: dd_Smed_v6_3990_0_1, dd_Smed_v6_3990_0_1, [RH, Score=647, Expect=0.0]} {RNA1509_8291} {RNA1310_4667.1, RNA1509_8291} {RNA1509_8291, RNA815_1381.1}
2.	MligTC455_36738	395	8.22	Mlig455_003439	Neo: - Age: -		1.695	-	-	0.950	-	-	0.745	Mlig455_003439 {REF} {Length: 698} {NoTransDecoderORF} {RNA1509_39494} {RNA1310_56023, RNA1509_39494} {RNA1509_39494, RNA815_25618}
3.	MligTC455_24021	1496	31.17	Mlig455_056154	Neo: - Age: -	CTDSP1	1.67	-	0.715	-	-	-	0.955	Mlig455_056154 {REF} {Length: 2790} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=160.4]} {Human: ENSG00000144579, CTDSP1, CTD small phosphatase 1, [RH, Score=246, Expect=3e-80]} {Mouse: ENSMUSG00000026176, Ctdsp1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, [RH, Score=244, Expect=1e-79]; ENSMUSG00000047409, Ctdspl, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like, [RH, Score=236, Expect=1e-76]} {Dmel: FBgn0036556, CG5830, [RH, Score=231, Expect=7e-74]} {Celegans: WBGene00007054, scpl-1, CTD small phosphatase-like protein 1, [RH, Score=226, Expect=4e-70]} {Smed: dd_Smed_v6_8196_0_1, dd_Smed_v6_8196_0_1, [RH, Score=251, Expect=2e-77]} {RNA1509_14122, RNA1509_25608, RNA1509_49170, RNA1509_9752} {RNA1310_7374.1, RNA1509_14122, RNA1509_25608, RNA1509_49170} {RNA1509_14122, RNA1509_25608, RNA1509_49170, RNA815_2431}
4.	MligTC455_18020	367	7.65	Mlig455_069164	Neo: - Age: -	TMEM68	0.955	-	-	0.955	-	-	-	Mlig455_069164 {REF} {Length: 1616} {TRANSSPLICED} {Human: ENSG00000167904, TMEM68, transmembrane protein 68, [Score=122, Expect=3e-32]} {Mouse: ENSMUSG00000028232, Tmem68, transmembrane protein 68, [Score=116, Expect=2e-30]} {Dmel: FBgn0085377, CG34348, [Score=124, Expect=2e-33]} {Celegans: WBGene00021394, Y38C1AA.1, [Score=105, Expect=3e-26]} {Smed: dd_Smed_v6_13739_0_1, dd_Smed_v6_13739_0_1, [Score=98.2, Expect=4e-25]} {RNA1509_15918} {RNA1310_13548} {RNA815_46805}