TomoSeq data search

Data search

Results for MligTC455_44016

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_44016

61

1.28

Mlig455_055326

Neo: -

Age: Down-Down-Up

U2SURP

Mlig455_055326 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Surp module [PF01805.22, score=51.4]; CID domain [PF04818.15, score=47.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=45.7]; RNA recognition motif [PF16367.7, score=20.9]} {Human: ENSG00000163714, U2SURP, U2 snRNP associated SURP domain containing, [RH, Score=406, Expect=6e-127]} {Mouse: ENSMUSG00000032407, U2surp, U2 snRNP-associated SURP domain containing, [RH, Score=407, Expect=2e-127]} {Dmel: FBgn0034572, CG9346, [RH, Score=378, Expect=2e-117]} {Celegans: WBGene00015581, C07H6.4, [RH, Score=319, Expect=1e-95]} {Smed: dd_Smed_v6_3029_0_1, dd_Smed_v6_3029_0_1, [RH, Score=476, Expect=3e-155]} {RNA1509_18743} {RNA1310_6191} {RNA815_1206.1}

Cumulative graph for MligTC455_44016

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.499	1.631	1.00000	1.00000
RegionR2	2.208	1.631	0.12807	0.44395
RegionR3	1.138	1.631	0.37669	0.90959
RegionR4	1.973	1.631	0.11841	0.34417
RegionR5	2.322	1.631	0.04797	0.18202
RegionR6	1.49	1.631	0.27765	0.86768
RegionR7	-2.748	1.631	0.99978	1.00000
RegionR8	-2.884	1.631	0.99980	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.144	1.631	0.99998	1.00000
RegenerationR2	0.052	1.631	0.94568	1.00000
RegenerationR3	1.258	1.631	0.19011	0.62532
RegenerationR4	0.795	1.631	0.36572	0.79073
RegenerationR5	0.586	1.631	0.40109	0.80005
RegenerationR6	1.58	1.631	0.08809	0.37082
RegenerationBL	3.457	1.631	0.05812	0.27958
RegenerationTP	2.589	1.631	0.36095	0.80097

Genes with expression patterns similar to MligTC455_44016

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_44016	61	1.28	Mlig455_055326	Neo: - Age: Down-Down-Up	U2SURP	5	1.000	-	1.000	1.000	1.000	1.000	Mlig455_055326 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Surp module [PF01805.22, score=51.4]; CID domain [PF04818.15, score=47.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=45.7]; RNA recognition motif [PF16367.7, score=20.9]} {Human: ENSG00000163714, U2SURP, U2 snRNP associated SURP domain containing, [RH, Score=406, Expect=6e-127]} {Mouse: ENSMUSG00000032407, U2surp, U2 snRNP-associated SURP domain containing, [RH, Score=407, Expect=2e-127]} {Dmel: FBgn0034572, CG9346, [RH, Score=378, Expect=2e-117]} {Celegans: WBGene00015581, C07H6.4, [RH, Score=319, Expect=1e-95]} {Smed: dd_Smed_v6_3029_0_1, dd_Smed_v6_3029_0_1, [RH, Score=476, Expect=3e-155]} {RNA1509_18743} {RNA1310_6191} {RNA815_1206.1}
2.	MligTC455_43087	148	3.08	Mlig455_049565	Neo: - Age: -		1.694	-	-	-	0.951	-	0.743	Mlig455_049565 {REF} {Length: 2925} {TRANSSPLICED} {Pfam: Homeodomain [PF00046.31, score=35.7]; Ubiquitin-like oligomerisation domain of SATB [PF16534.7, score=31.1]} {Dmel: FBgn0020307, dve, defective proventriculus, [RH, Score=103, Expect=5e-23]} {Celegans: WBGene00022861, dve-1, [RH, Score=79.3, Expect=1e-15]} {RNA1310_30262} {RNA815_49480}
3.	MligTC455_40050	173	3.61	Mlig455_058896	Neo: Int S/G2/M Age: Up-Down-Down	PBRM1	1.688	-	-	0.954	-	-	0.734	Mlig455_058896 {REF} {Length: 5141} {Pfam: Bromodomain [PF00439.27, score=152.2]; BAH domain [PF01426.20, score=101.7]; HMG (high mobility group) box [PF00505.21, score=47.0]; HMG-box domain [PF09011.12, score=37.9]} {Human: ENSG00000163939, PBRM1, polybromo 1, [RH, Score=514, Expect=7e-157]} {Mouse: ENSMUSG00000042323, Pbrm1, polybromo 1, [RH, Score=513, Expect=3e-156]} {Dmel: FBgn0039227, polybromo, [RH, Score=412, Expect=1e-120]} {Celegans: WBGene00007042, pbrm-1, PolyBRoMo domain containing, [RH, Score=331, Expect=6e-93]} {Smed: dd_Smed_v6_4218_0_1, dd_Smed_v6_4218_0_1, [Score=670, Expect=0.0]} {RNA1509_5406} {RNA1310_918.1} {RNA815_609.1}
4.	MligTC455_48788	183	3.82	Mlig455_035100, Mlig455_053308	Neo: Irradiation Age: Down-Up-Down	GNAO1	1.669	-	-	0.963	-	-	0.706	Mlig455_035100 {REF} {Length: 2706} {Pfam: G-protein alpha subunit [PF00503.22, score=366.7]; ADP-ribosylation factor family [PF00025.23, score=53.2]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=511, Expect=0.0]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=505, Expect=0.0]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [Score=550, Expect=0.0]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [Score=540, Expect=0.0]} {Smed: dd_Smed_v6_1656_0_2, dd_Smed_v6_1656_0_2, [Score=540, Expect=0.0]} {RNA1509_46579} {RNA1310_17579} {RNA815_37690} Mlig455_053308 {REF} {Length: 2701} {TRANSSPLICED} {Pfam: G-protein alpha subunit [PF00503.22, score=390.5]; ADP-ribosylation factor family [PF00025.23, score=62.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=25.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=21.7]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=556, Expect=0.0]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=550, Expect=0.0]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [Score=596, Expect=0.0]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [Score=584, Expect=0.0]} {Smed: dd_Smed_v6_1656_0_2, dd_Smed_v6_1656_0_2, [Score=581, Expect=0.0]} {RNA1509_46579} {RNA1310_19561} {RNA815_37690}
5.	MligTC455_21548	127	2.64	Mlig455_036813, Mlig455_052948, Mlig455_053016	Neo: - Age: -		0.979	-	-	0.979	-	-	-	Mlig455_036813 {REF} {Length: 1393} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30577} {RNA1310_80313} {RNA815_57959} Mlig455_052948 {REF} {Length: 2424} {NoTransDecoderORF} {RNA1509_30577} {RNA1310_80313} {RNA815_57959} Mlig455_053016 {REF} {Length: 1393} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30577} {RNA1310_80313} {RNA815_57959}
6.	MligTC455_44783	110	2.29	Mlig455_034984	Neo: - Age: Down-Up-Down		0.976	-	-	0.976	-	-	-	Mlig455_034984 {REF} {Length: 4235} {Pfam: CHY zinc finger [PF05495.14, score=51.7]} {RNA1509_57768} {RNA1310_6209, RNA1509_57768} {RNA1509_57768, RNA815_7285.1}
7.	MligTC455_50351	87	1.82	Mlig455_042590	Neo: - Age: logFC(26M/2M)=-1.032	RETSAT	0.975	-	-	0.975	-	-	-	Mlig455_042590 {REF} {Length: 2445} {TRANSSPLICED} {Human: ENSG00000042445, RETSAT, retinol saturase, [Score=70.1, Expect=1e-12]} {Mouse: ENSMUSG00000056666, Retsat, retinol saturase (all trans retinol 13,14 reductase), [Score=58.9, Expect=3e-09]} {RNA1509_11186, RNA1509_36297} {RNA1310_6975.1, RNA1509_36297} {RNA1509_36297, RNA815_3383.1}
8.	MligTC455_35427	379	7.9	Mlig455_047446	Neo: - Age: Down-Up-Down	COG2	0.974	-	-	0.974	-	-	-	Mlig455_047446 {REF} {Length: 3609} {TRANSSPLICED} {Pfam: COG (conserved oligomeric Golgi) complex component, COG2 [PF06148.13, score=103.4]; Domain of unknown function (DUF3510) [PF12022.10, score=95.6]} {Human: ENSG00000135775, COG2, component of oligomeric golgi complex 2, [RH, Score=285, Expect=2e-84]} {Mouse: ENSMUSG00000031979, Cog2, component of oligomeric golgi complex 2, [RH, Score=285, Expect=8e-85]} {Dmel: FBgn0026634, ldlCp, ldlCp-related protein, [RH, Score=201, Expect=9e-55]} {Celegans: WBGene00000585, cogc-2, Conserved oligomeric Golgi complex subunit 2, [RH, Score=135, Expect=1e-32]} {Smed: dd_Smed_v6_5210_0_1, dd_Smed_v6_5210_0_1, [RH, Score=283, Expect=2e-84]} {RNA1509_17078} {RNA1310_5891} {RNA815_9043.1}
9.	MligTC455_49471	112	2.34	Mlig455_002953	Neo: - Age: -	TPGS2	0.966	-	-	0.966	-	-	-	Mlig455_002953 {REF} {Length: 1861} {TRANSSPLICED} {Pfam: SMI1 / KNR4 family (SUKH-1) [PF09346.12, score=19.4]} {Human: ENSG00000134779, TPGS2, tubulin polyglutamylase complex subunit 2, [RH, Score=120, Expect=2e-31]} {Mouse: ENSMUSG00000024269, Tpgs2, tubulin polyglutamylase complex subunit 2, [RH, Score=115, Expect=1e-29]} {Smed: dd_Smed_v6_13845_0_1, dd_Smed_v6_13845_0_1, [RH, Score=149, Expect=4e-43]} {RNA1509_42120} {RNA1310_25304.1, RNA1509_42120} {RNA1509_42120, RNA815_43962}
10.	MligTC455_28409	43	0.9	Mlig455_070870	Neo: - Age: -		0.965	-	-	0.965	-	-	-	Mlig455_070870 {REF} {Length: 875} {RNA1509_42084} {RNA1310_79140} {RNA815_43965}
11.	MligTC455_15753	585	12.19	Mlig455_027590, Mlig455_046190	Neo: - Age: Up-Up-Down	UBP1	0.963	-	-	0.963	-	-	-	Mlig455_027590 {REF} {Length: 4463} {TRANSSPLICED} {Pfam: CP2 transcription factor [PF04516.17, score=172.1]; SAM domain (Sterile alpha motif) [PF18016.3, score=65.6]} {Human: ENSG00000153560, UBP1, upstream binding protein 1, [Score=299, Expect=4e-94]; ENSG00000115112, TFCP2L1, transcription factor CP2 like 1, [Score=295, Expect=2e-93]} {Mouse: ENSMUSG00000009741, Ubp1, upstream binding protein 1, [Score=298, Expect=7e-94]} {Dmel: FBgn0050011, gem, gemini, [Score=197, Expect=6e-54]} {Celegans: WBGene00001707, grh-1, GRainyHead (Drosophila transcription factor) homolog; Grainyhead transcription factor, [Score=84.3, Expect=6e-17]} {RNA1509_31359} {RNA1310_4322} {RNA815_9819.1} Mlig455_046190 {REF} {Length: 4386} {TRANSSPLICED} {Pfam: CP2 transcription factor [PF04516.17, score=172.1]; SAM domain (Sterile alpha motif) [PF18016.3, score=65.6]} {Human: ENSG00000153560, UBP1, upstream binding protein 1, [Score=299, Expect=4e-94]; ENSG00000115112, TFCP2L1, transcription factor CP2 like 1, [Score=295, Expect=1e-93]} {Mouse: ENSMUSG00000009741, Ubp1, upstream binding protein 1, [Score=298, Expect=6e-94]} {Dmel: FBgn0050011, gem, gemini, [Score=197, Expect=6e-54]} {Celegans: WBGene00001707, grh-1, GRainyHead (Drosophila transcription factor) homolog; Grainyhead transcription factor, [Score=84.3, Expect=5e-17]} {RNA1509_31359} {RNA1310_4322, RNA1509_31359} {RNA1509_31359, RNA815_9819.1}
12.	MligTC455_27198	106	2.2	Mlig455_039551	Neo: - Age: Up-Down-Up	MPP7	0.959	-	-	0.959	-	-	-	Mlig455_039551 {REF} {Length: 3414} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=44.5]; Guanylate kinase [PF00625.23, score=36.4]; L27 domain [PF02828.18, score=24.6]; Variant SH3 domain [PF07653.19, score=20.4]} {Human: ENSG00000150054, MPP7, membrane palmitoylated protein 7, [Score=268, Expect=5e-82]} {Mouse: ENSMUSG00000057440, Mpp7, membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7), [Score=288, Expect=6e-90]} {Dmel: FBgn0050021, metro, menage a trois, [RH, Score=296, Expect=5e-93]} {Celegans: WBGene00021914, magu-1, MAGUK family, [Score=162, Expect=2e-43]} {Smed: dd_Smed_v6_7957_0_1, dd_Smed_v6_7957_0_1, [RH, Score=377, Expect=2e-124]} {RNA1509_59177} {RNA1310_8192} {RNA815_18062}
13.	MligTC455_23328	273	5.68	Mlig455_005340	Neo: - Age: -	RWDD1	0.955	-	-	0.955	-	-	-	Mlig455_005340 {REF} {Length: 3483} {Pfam: RWD domain [PF05773.24, score=71.6]; DRG Family Regulatory Proteins, Tma46 [PF16543.7, score=29.1]} {Human: ENSG00000111832, RWDD1, RWD domain containing 1, [RH, Score=142, Expect=5e-41]} {Mouse: ENSMUSG00000019782, Rwdd1, RWD domain containing 1, [RH, Score=150, Expect=2e-44]} {Dmel: FBgn0039163, CG5515, [RH, Score=114, Expect=2e-30]} {Celegans: WBGene00012037, T26E3.4, [RH, Score=73.9, Expect=1e-15]} {Smed: dd_Smed_v6_8892_0_1, dd_Smed_v6_8892_0_1, [RH, Score=100, Expect=2e-25]} {RNA1509_11829} {RNA1310_16178.1, RNA1509_11829} {RNA1509_11829, RNA815_18505}
14.	MligTC455_21067	312	6.49	Mlig455_037544	Neo: - Age: Down-Up-Up Region-enriched R2: 1.855/0.04028	RABEPK	0.953	-	-	0.953	-	-	-	Mlig455_037544 {REF} {Length: 2564} {Pfam: Kelch motif [PF13854.8, score=66.3]; Galactose oxidase, central domain [PF13415.8, score=60.7]; Kelch motif [PF13964.8, score=60.5]; Galactose oxidase, central domain [PF13418.8, score=56.2]; Kelch motif [PF01344.27, score=49.0]; Kelch motif [PF07646.17, score=30.5]} {Human: ENSG00000136933, RABEPK, Rab9 effector protein with kelch motifs, [Score=113, Expect=2e-28]} {Mouse: ENSMUSG00000070953, Rabepk, Rab9 effector protein with kelch motifs, [Score=108, Expect=6e-27]} {Dmel: FBgn0040344, CG3711, [Score=58.5, Expect=3e-09]} {RNA1509_13410, RNA1509_24421} {RNA1310_16584, RNA1509_24421} {RNA1509_24421, RNA815_18867}
15.	MligTC455_37237	118	2.46	Mlig455_053782	Neo: - Age: -	ABTB1	0.953	-	-	0.953	-	-	-	Mlig455_053782 {REF} {Length: 2455} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF00651.33, score=95.5]} {Human: ENSG00000114626, ABTB1, ankyrin repeat and BTB domain containing 1, [RH, Score=184, Expect=1e-53]} {Mouse: ENSMUSG00000030083, Abtb1, ankyrin repeat and BTB (POZ) domain containing 1, [Score=171, Expect=1e-48]} {Dmel: FBgn0040038, klhl10, kelch like family member 10, [Score=47.4, Expect=1e-05]} {Smed: dd_Smed_v6_7778_0_1, dd_Smed_v6_7778_0_1, [Score=49.3, Expect=2e-06]} {RNA1509_58824} {RNA1310_20025, RNA1509_58824}
16.	MligTC455_29269	82	1.71	Mlig455_066940, Mlig455_070362	Neo: - Age: -		0.951	-	-	-	0.951	-	-	Mlig455_066940 {REF} {Length: 1055} {NoTransDecoderORF} {RNA1509_25022} {RNA1310_102339} {RNA815_4278} Mlig455_070362 {REF} {Length: 1537} {NoTransDecoderORF} {RNA1509_2860} {RNA1310_11421.1} {RNA815_19691.1}
17.	MligTC455_36923	195	4.06	Mlig455_043016	Neo: - Age: -	EHBP1L1	0.951	-	-	0.951	-	-	-	Mlig455_043016 {REF} {Length: 4185} {TRANSSPLICED} {Pfam: Bivalent Mical/EHBP Rab binding domain [PF12130.10, score=112.9]; Calponin homology (CH) domain [PF00307.33, score=78.3]; N-terminal C2 in EEIG1 and EHBP1 proteins [PF10358.11, score=49.3]; CAMSAP CH domain [PF11971.10, score=22.7]} {Human: ENSG00000173442, EHBP1L1, EH domain binding protein 1 like 1, [RH, Score=295, Expect=5e-91]} {Mouse: ENSMUSG00000024937, Ehbp1l1, EH domain binding protein 1-like 1, [Score=296, Expect=4e-88]} {Dmel: FBgn0034180, Ehbp1, Eps15 homology domain containing protein-binding protein 1, [RH, Score=166, Expect=4e-42]} {Celegans: WBGene00009098, ehbp-1, EH (Eps-15-homology) domain Binding Protein family, [RH, Score=124, Expect=7e-29]} {Smed: dd_Smed_v6_5788_0_1, dd_Smed_v6_5788_0_1, [Score=390, Expect=1e-124]} {RNA1509_4997} {RNA1310_4043} {RNA815_4057}
18.	MligTC455_27102	49	1.02	Mlig455_006381	Neo: - Age: Down-Down-Up	NOTCH1	0.95	-	-	-	-	-	0.950	Mlig455_006381 {REF} {Length: 3842} {Pfam: EGF-like domain [PF00008.29, score=66.1]; Human growth factor-like EGF [PF12661.9, score=28.8]; EGF-like domain [PF07974.15, score=27.1]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=123, Expect=9e-28]; ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=122, Expect=2e-27]; ENSG00000134250, NOTCH2, notch 2, [Score=120, Expect=8e-27]} {Mouse: ENSMUSG00000035403, Crb2, crumbs family member 2, [Score=130, Expect=2e-30]; ENSMUSG00000028369, Svep1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=124, Expect=3e-28]} {Dmel: FBgn0259685, crb, crumbs, [Score=130, Expect=2e-30]} {Celegans: WBGene00000792, crb-1, Drosophila CRumBs homolog, [Score=107, Expect=3e-23]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=111, Expect=9e-25]} {RNA1509_35846} {RNA1310_9600.1} {RNA815_3985.1}

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