TomoSeq data search

Data search

Results for MligTC455_44241

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_44241

669

13.93

Mlig455_036732

Neo: -

Age: -

Region-enriched R2: 1.413/0.00826

Mlig455_036732 {REF} {Length: 1678} {Pfam: Universal stress protein family [PF00582.28, score=92.2]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [Score=111, Expect=1e-31]} {RNA1509_25843} {RNA1310_29557.1} {RNA815_18242}

Cumulative graph for MligTC455_44241

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.255	4.018	0.33912	0.98424
RegionR2	1.413	4.018	0.00027	0.00826
RegionR3	0.167	4.018	0.63030	1.00000
RegionR4	-0.45	4.018	0.33427	0.65294
RegionR5	-1.135	4.018	0.00955	0.05577
RegionR6	-0.199	4.018	0.61796	1.00000
RegionR7	1.049	4.018	0.01035	0.17498
RegionR8	0.41	4.018	0.44379	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.65	4.018	0.28087	0.98107
RegenerationR2	-0.509	4.018	0.08465	0.46728
RegenerationR3	-0.468	4.018	0.22685	0.66196
RegenerationR4	-0.02	4.018	0.96235	1.00000
RegenerationR5	0.086	4.018	0.83834	1.00000
RegenerationR6	0.292	4.018	0.48282	0.79348
RegenerationBL	0.393	4.018	0.36335	0.73184
RegenerationTP	0.314	4.018	0.47385	0.88338

Genes with expression patterns similar to MligTC455_44241

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_44241	669	13.93	Mlig455_036732	Neo: - Age: - Region-enriched R2: 1.413/0.00826		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_036732 {REF} {Length: 1678} {Pfam: Universal stress protein family [PF00582.28, score=92.2]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [Score=111, Expect=1e-31]} {RNA1509_25843} {RNA1310_29557.1} {RNA815_18242}
2.	MligTC455_40882	435	9.07	Mlig455_059173	Neo: - Age: -	GAD1	2.676	-	0.960	0.836	-	-	0.880	Mlig455_059173 {REF} {Length: 3488} {Pfam: Pyridoxal-dependent decarboxylase conserved domain [PF00282.21, score=391.1]} {Human: ENSG00000128683, GAD1, glutamate decarboxylase 1, [RH, Score=659, Expect=0.0]} {Mouse: ENSMUSG00000070880, Gad1, glutamate decarboxylase 1, [RH, Score=659, Expect=0.0]} {Dmel: FBgn0004516, Gad1, Glutamic acid decarboxylase 1, [RH, Score=558, Expect=0.0]} {Celegans: WBGene00006762, unc-25, Glutamic acid decarboxylase, [RH, Score=595, Expect=0.0]} {Smed: dd_Smed_v6_12653_0_1, dd_Smed_v6_12653_0_1, [RH, Score=666, Expect=0.0]} {RNA1509_17310} {RNA1310_9376} {RNA815_16779}
3.	MligTC455_35294	1547	32.23	Mlig455_001167, Mlig455_001326, Mlig455_070580	Neo: - Age: Down-Up-Up Region-enriched R8: 1.741/0.00233 Region-enriched R2: 1.304/0.02383	GRIA2, GRID1	2.633	-	0.846	0.974	0.813	-	-	Mlig455_001167 {REF} {Length: 3625} {Pfam: Ligand-gated ion channel [PF00060.28, score=89.8]; Universal stress protein family [PF00582.28, score=80.5]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=33.4]; Receptor family ligand binding region [PF01094.30, score=23.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=19.3]} {Human: ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=123, Expect=6e-28]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=120, Expect=3e-27]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=117, Expect=5e-26]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=123, Expect=3e-28]; ENSMUSG00000041078, Grid1, glutamate receptor, ionotropic, delta 1, [Score=117, Expect=4e-26]} {Dmel: FBgn0038837, CG3822, [Score=124, Expect=9e-29]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=113, Expect=2e-25]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=220, Expect=2e-63]} {RNA1509_17988} {RNA1310_23557} {RNA815_11623.1} Mlig455_001326 {REF} {Length: 3494} {Pfam: Ligand-gated ion channel [PF00060.28, score=92.1]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=33.4]; Receptor family ligand binding region [PF01094.30, score=23.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=19.8]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=121, Expect=2e-27]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=118, Expect=2e-26]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=124, Expect=2e-28]} {Dmel: FBgn0038840, Grik, [Score=125, Expect=7e-29]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=114, Expect=1e-25]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=220, Expect=9e-64]} {RNA1509_17988} {RNA1310_23557} {RNA815_11623.1} Mlig455_070580 {REF} {Length: 3686} {Pfam: Ligand-gated ion channel [PF00060.28, score=92.1]; Universal stress protein family [PF00582.28, score=80.3]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=33.4]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=33.2]; Receptor family ligand binding region [PF01094.30, score=22.8]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=125, Expect=1e-28]; ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=122, Expect=1e-27]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=128, Expect=1e-29]} {Dmel: FBgn0038837, CG3822, [Score=135, Expect=4e-32]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=119, Expect=4e-27]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=237, Expect=2e-69]} {RNA1509_17988} {RNA1310_23557} {RNA815_11623.1}
4.	MligTC455_18787	963	20.06	Mlig455_014022	Neo: - Age: - Region-enriched R2: 1.334/0.03482	STRC	2.455	0.761	-	0.956	-	-	0.738	Mlig455_014022 {REF} {Length: 5754} {Human: ENSG00000242866, STRC, stereocilin, [RH, Score=76.3, Expect=4e-13]} {Mouse: ENSMUSG00000033498, Strc, stereocilin, [RH, Score=80.9, Expect=1e-14]} {RNA1509_4378} {RNA1310_1493.1, RNA1509_4378} {RNA1509_4378, RNA815_804}
5.	MligTC455_51314	525	10.93	Mlig455_017296, Mlig455_045285	Neo: - Age: - Region-enriched R2: 2.314/0.04004 Region-enriched R6: 2.112/0.04352		2.435	0.720	0.739	-	-	-	0.976	Mlig455_017296 {REF} {Length: 2087} {RNA1310_34789} {RNA815_64894} Mlig455_045285 {REF} {Length: 1644} {RNA1310_34789} {RNA815_64894}
6.	MligTC455_07623	797	16.6	Mlig455_048459	Neo: - Age: Down-Up-Down	STOM	1.898	-	0.954	-	-	-	0.944	Mlig455_048459 {REF} {Length: 2249} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=40.3]} {Human: ENSG00000148175, STOM, stomatin, [Score=157, Expect=4e-48]} {Mouse: ENSMUSG00000026880, Stom, stomatin, [Score=159, Expect=3e-49]} {Dmel: FBgn0260657, CG42540, [Score=158, Expect=1e-47]} {Celegans: WBGene00006068, sto-6, STOmatin, [Score=159, Expect=5e-49]} {Smed: dd_Smed_v6_6396_0_1, dd_Smed_v6_6396_0_1, [Score=185, Expect=1e-59]} {RNA1509_9137} {RNA1310_11482.1} {RNA815_6842}
7.	MligTC455_40653	608	12.66	Mlig455_001674	Neo: - Age: - Region-enriched R2: 1.468/0.01853		1.855	-	0.872	-	-	-	0.983	Mlig455_001674 {REF} {Length: 2361} {TRANSSPLICED} {Pfam: Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=51.2]; Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=48.0]} {Smed: dd_Smed_v6_8715_0_1, dd_Smed_v6_8715_0_1, [Score=50.8, Expect=1e-06]} {RNA1509_19981, RNA1509_43006} {RNA1310_9812, RNA1509_19981, RNA1509_43006} {RNA1509_19981, RNA1509_43006, RNA815_12879}
8.	MligTC455_52325	682	14.2	Mlig455_061124	Neo: - Age: logFC(26M/2M)=-0.271 Regeneration-downregulated BL: -1.826 Regeneration-depleted BL: -1.826		1.827	-	0.952	-	-	-	0.875	Mlig455_061124 {REF} {Length: 9447} {Pfam: Fibrinogen binding protein [PF08017.13, score=176.9]} {RNA1509_13352, RNA1509_42393, RNA1509_55215, RNA1509_58455} {RNA1310_7913, RNA1509_13352, RNA1509_42393, RNA1509_55215, RNA1509_58455} {RNA1509_13352, RNA1509_42393, RNA1509_55215, RNA1509_58455, RNA815_2288}
9.	MligTC455_23269	1700	35.41	Mlig455_058823	Neo: - Age: - Region-enriched R8: 1.965/0.00066	SYT1	1.823	-	0.851	-	-	-	0.972	Mlig455_058823 {REF} {Length: 3328} {Pfam: C2 domain [PF00168.32, score=181.3]; CEP76 C2 domain [PF15627.8, score=21.0]; Phosphoinositide 3-kinase C2 [PF00792.26, score=20.4]} {Human: ENSG00000067715, SYT1, synaptotagmin 1, [RH, Score=436, Expect=4e-151]} {Mouse: ENSMUSG00000035864, Syt1, synaptotagmin I, [RH, Score=435, Expect=4e-151]} {Dmel: FBgn0004242, Syt1, Synaptotagmin 1, [Score=496, Expect=1e-174]} {Celegans: WBGene00004921, snt-1, Synaptotagmin-1, [Score=432, Expect=6e-150]} {Smed: dd_Smed_v6_6730_0_1, dd_Smed_v6_6730_0_1, [Score=542, Expect=0.0]} {RNA1509_10517, RNA1509_25740, RNA1509_36281, RNA1509_40080} {RNA1310_21689, RNA1509_10517, RNA1509_25740, RNA1509_36281, RNA1509_40080} {RNA1509_10517, RNA1509_25740, RNA1509_36281, RNA1509_40080, RNA815_10622.1}
10.	MligTC455_44264	1135	23.65	Mlig455_048455, Mlig455_062720	Neo: - Age: - Region-specific R2: 2.470 Region-enriched R2: 1.517/0.00960		1.752	-	0.802	0.950	-	-	-	Mlig455_048455 {REF} {Length: 2873} {Pfam: Borrelia P83/100 protein [PF05262.13, score=18.8]} {Smed: dd_Smed_v6_19428_0_1, dd_Smed_v6_19428_0_1, [RH, Score=76.6, Expect=5e-15]} {RNA1509_14284} {RNA1310_10721, RNA1509_14284} {RNA1509_14284, RNA815_3648} Mlig455_062720 {REF} {Length: 2364} {Pfam: Borrelia P83/100 protein [PF05262.13, score=19.7]} {Smed: dd_Smed_v6_19428_0_1, dd_Smed_v6_19428_0_1, [RH, Score=78.2, Expect=2e-15]} {RNA1509_14284, RNA1509_52018} {RNA1310_10721, RNA1509_52018} {RNA1509_52018, RNA815_3648}
11.	MligTC455_42967	296	6.17	Mlig455_002749, Mlig455_011489	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-1.077		1.683	0.711	-	-	-	-	0.972	Mlig455_002749 {REF} {Length: 1700} {RNA1509_21752} {RNA1310_30402.1} {RNA815_26388} Mlig455_011489 {REF} {Length: 1762} {RNA1509_21752, RNA1509_6543} {RNA1310_30402.1, RNA1509_6543} {RNA1509_6543, RNA815_26388}
12.	MligTC455_46583	1098	22.87	Mlig455_067509	Neo: - Age: logFC(26M/2M)=-0.318 Region-enriched R8: 2.830/0.00000 Region-enriched R7: 1.613/0.00085 Regeneration-depleted TP: -3.677 Regeneration-depleted BL: -2.763 Regeneration-depleted R4: -2.132 Regeneration-depleted R2: -1.934		0.963	-	-	-	-	-	0.963	Mlig455_067509 {REF} {Length: 1536} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=25.3]} {Dmel: FBgn0051221, CG31221, [Score=62.8, Expect=5e-12]} {Celegans: WBGene00010290, F58H1.7, [RH, Score=66.6, Expect=1e-13]} {Smed: dd_Smed_v6_2598_0_1, dd_Smed_v6_2598_0_1, [RH, Score=173, Expect=3e-55]} {RNA1509_59060} {RNA1310_28256} {RNA815_15141.1}
13.	MligTC455_20838	235	4.89	Mlig455_022987	Neo: - Age: -	H6PD	0.959	-	-	-	-	-	0.959	Mlig455_022987 {REF} {Length: 2684} {TRANSSPLICED} {Pfam: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase [PF01182.22, score=105.1]; Glucose-6-phosphate dehydrogenase, C-terminal domain [PF02781.18, score=96.2]; Glucose-6-phosphate dehydrogenase, NAD binding domain [PF00479.24, score=82.3]} {Human: ENSG00000049239, H6PD, hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase, [Score=210, Expect=1e-56]} {Mouse: ENSMUSG00000028980, H6pd, hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase), [Score=222, Expect=5e-61]} {Dmel: FBgn0004057, Zw, Zwischenferment, [Score=142, Expect=3e-35]} {Celegans: WBGene00007108, gspd-1, Glucose-6-phosphate 1-dehydrogenase, [Score=133, Expect=1e-32]} {Smed: dd_Smed_v6_2965_0_1, dd_Smed_v6_2965_0_1, [Score=132, Expect=2e-32]} {RNA1509_16416} {RNA1310_9105, RNA1509_16416} {RNA1509_16416, RNA815_2264.1}
14.	MligTC455_43643	2324	48.41	Mlig455_065102	Neo: - Age: - Region-specific R2: 2.496 Region-enriched R2: 1.834/0.00001 Regeneration-downregulated R6: -1.642 Regeneration-depleted R6: -1.642		0.958	-	-	0.958	-	-	-	Mlig455_065102 {REF} {Length: 850} {RNA1509_16353, RNA1509_24268} {RNA1310_47277.1, RNA1509_24268} {RNA1509_24268, RNA815_19145.2}
15.	MligTC455_38341	247	5.16	Mlig455_063905	Neo: - Age: logFC(26M/2M)=0.521		0.957	-	-	-	-	-	0.957	Mlig455_063905 {REF} {Length: 3946} {Mouse: ENSMUSG00000026579, F5, coagulation factor V, [Score=50.8, Expect=3e-06]} {RNA1509_22375} {RNA1310_52447} {RNA815_8374.2}
16.	MligTC455_13764	175	3.65	Mlig455_010818	Neo: - Age: -		0.953	-	-	-	-	-	0.953	Mlig455_010818 {REF} {Length: 1953} {RNA1509_22845} {RNA1310_11632} {RNA815_10000}
17.	MligTC455_15531	235	4.89	Mlig455_047388	Neo: - Age: - Region-enriched R2: 3.376/0.02120 Region-enriched R6: 3.333/0.00371	PCDH1	0.951	-	-	-	0.951	-	-	Mlig455_047388 {REF} {Length: 4578} {Pfam: Cadherin domain [PF00028.19, score=151.1]; Cadherin-like [PF16184.7, score=34.7]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=194, Expect=2e-49]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=194, Expect=7e-50]} {Dmel: FBgn0024836, stan, starry night, [Score=166, Expect=6e-41]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=127, Expect=5e-29]} {Smed: dd_Smed_v6_21207_0_1, dd_Smed_v6_21207_0_1, [Score=266, Expect=2e-73]} {RNA1509_29466} {RNA1310_2382, RNA1509_29466} {RNA1509_29466, RNA815_20993}

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