Data search
Results for MligTC455_44479
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_44479 | 374 | 7.79 | Mlig455_064902 | Neo: - Age: - |
MTMR3 | Mlig455_064902 {REF} {Length: 5484} {TRANSSPLICED} {Pfam: Myotubularin-like phosphatase domain [PF06602.16, score=315.7]} {Human: ENSG00000100330, MTMR3, myotubularin related protein 3, [Score=265, Expect=3e-75]; ENSG00000108389, MTMR4, myotubularin related protein 4, [Score=254, Expect=1e-71]} {Mouse: ENSMUSG00000034354, Mtmr3, myotubularin related protein 3, [Score=265, Expect=2e-75]; ENSMUSG00000018401, Mtmr4, myotubularin related protein 4, [Score=253, Expect=2e-71]} {Dmel: FBgn0030735, CG3632, [Score=251, Expect=4e-71]} {Celegans: WBGene00003476, mtm-3, Myotubularin-related protein 3, [RH, Score=250, Expect=3e-71]} {Smed: dd_Smed_v6_9000_0_1, dd_Smed_v6_9000_0_1, [Score=282, Expect=2e-83]} {RNA1509_29425} {RNA1310_17412, RNA1509_29425} {RNA1509_29425, RNA815_22002} |
Cumulative graph for MligTC455_44479
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.968 | 3.507 | 0.50634 | 1.00000 | |
| RegionR2 | -0.033 | 3.507 | 0.95208 | 1.00000 | |
| RegionR3 | -0.09 | 3.507 | 0.84765 | 1.00000 | |
| RegionR4 | 0.615 | 3.507 | 0.27497 | 0.58159 | |
| RegionR5 | 0.947 | 3.507 | 0.01255 | 0.06827 | |
| RegionR6 | -0.636 | 3.507 | 0.21566 | 0.79378 | |
| RegionR7 | -0.533 | 3.507 | 0.47086 | 1.00000 | |
| RegionR8 | -1.237 | 3.507 | 0.24997 | 0.86923 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -7.112 | 3.507 | 0.11085 | 0.83476 | |
| RegenerationR2 | -0.016 | 3.507 | 0.97006 | 1.00000 | |
| RegenerationR3 | -0.038 | 3.507 | 0.93343 | 1.00000 | |
| RegenerationR4 | -0.158 | 3.507 | 0.74369 | 0.96885 | |
| RegenerationR5 | -0.312 | 3.507 | 0.44115 | 0.82547 | |
| RegenerationR6 | 1.068 | 3.507 | 0.03318 | 0.22746 | |
| RegenerationBL | 0.242 | 3.507 | 0.75364 | 1.00000 | |
| RegenerationTP | -0.483 | 3.507 | 0.62601 | 0.97509 |
Genes with expression patterns similar to MligTC455_44479
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_44479 | 374 | 7.79 | Mlig455_064902 | Neo: - Age: - |
MTMR3 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_064902 {REF} {Length: 5484} {TRANSSPLICED} {Pfam: Myotubularin-like phosphatase domain [PF06602.16, score=315.7]} {Human: ENSG00000100330, MTMR3, myotubularin related protein 3, [Score=265, Expect=3e-75]; ENSG00000108389, MTMR4, myotubularin related protein 4, [Score=254, Expect=1e-71]} {Mouse: ENSMUSG00000034354, Mtmr3, myotubularin related protein 3, [Score=265, Expect=2e-75]; ENSMUSG00000018401, Mtmr4, myotubularin related protein 4, [Score=253, Expect=2e-71]} {Dmel: FBgn0030735, CG3632, [Score=251, Expect=4e-71]} {Celegans: WBGene00003476, mtm-3, Myotubularin-related protein 3, [RH, Score=250, Expect=3e-71]} {Smed: dd_Smed_v6_9000_0_1, dd_Smed_v6_9000_0_1, [Score=282, Expect=2e-83]} {RNA1509_29425} {RNA1310_17412, RNA1509_29425} {RNA1509_29425, RNA815_22002} |
| 2. | MligTC455_33505 | 489 | 10.19 | Mlig455_057519 | Neo: Irradiation Age: - |
XAB2 | 2.48 | 0.817 | - | 0.952 | 0.711 | - | - | Mlig455_057519 {REF} {Length: 3105} {Pfam: Tetratricopeptide repeat [PF13428.8, score=64.4]; Tetratricopeptide repeat [PF14559.8, score=40.5]; Suppressor of forked protein (Suf) [PF05843.16, score=38.4]; Tetratricopeptide repeat [PF13429.8, score=38.2]; Tetratricopeptide repeat [PF07719.19, score=33.6]; Tetratricopeptide repeat [PF13424.8, score=27.5]; NRDE-2, necessary for RNA interference [PF08424.12, score=22.1]; Mad3/BUB1 homology region 1 [PF08311.14, score=21.3]} {Human: ENSG00000076924, XAB2, XPA binding protein 2, [RH, Score=873, Expect=0.0]} {Mouse: ENSMUSG00000019470, Xab2, XPA binding protein 2, [RH, Score=873, Expect=0.0]} {Dmel: FBgn0033859, fand, fandango, [RH, Score=868, Expect=0.0]} {Celegans: WBGene00016837, syf-1, [RH, Score=758, Expect=0.0]} {Smed: dd_Smed_v6_6473_0_1, dd_Smed_v6_6473_0_1, [RH, Score=712, Expect=0.0]} {RNA1509_33245, RNA1509_5006, RNA1509_55462} {RNA1310_2111.2, RNA1509_33245, RNA1509_55462} {RNA1509_33245, RNA1509_55462, RNA815_1651.1} |
| 3. | MligTC455_50590 | 680 | 14.16 | Mlig455_020128 | Neo: - Age: logFC(26M/2M)=-0.232 |
PDP1 | 1.74 | 0.780 | - | - | 0.960 | - | - | Mlig455_020128 {REF} {Length: 2927} {TRANSSPLICED} {Pfam: Protein phosphatase 2C [PF00481.23, score=112.4]; Protein phosphatase 2C [PF13672.8, score=20.2]} {Human: ENSG00000164951, PDP1, pyruvate dehyrogenase phosphatase catalytic subunit 1, [RH, Score=227, Expect=1e-67]; ENSG00000172840, PDP2, pyruvate dehyrogenase phosphatase catalytic subunit 2, [RH, Score=222, Expect=6e-66]} {Mouse: ENSMUSG00000049225, Pdp1, pyruvate dehyrogenase phosphatase catalytic subunit 1, [RH, Score=224, Expect=9e-67]; ENSMUSG00000048371, Pdp2, pyruvate dehyrogenase phosphatase catalytic subunit 2, [RH, Score=220, Expect=3e-65]} {Dmel: FBgn0029958, Pdp, Pyruvate dehydrogenase phosphatase, [RH, Score=202, Expect=3e-59]} {Celegans: WBGene00022832, pdp-1, Pyruvate Dehydrogenase Phosphatase homolog, [RH, Score=176, Expect=9e-50]} {Smed: dd_Smed_v6_4201_0_2, dd_Smed_v6_4201_0_2, [RH, Score=263, Expect=9e-83]} {RNA1509_27529, RNA1509_34993, RNA1509_42524, RNA1509_47289, RNA1509_7713} {RNA1310_10528, RNA1509_27529, RNA1509_34993, RNA1509_42524, RNA1509_47289, RNA1509_7713} {RNA1509_27529, RNA1509_34993, RNA1509_42524, RNA1509_47289, RNA1509_7713, RNA815_8293} |
| 4. | MligTC455_51170 | 1331 | 27.74 | Mlig455_029305, Mlig455_029328 | Neo: Int S/G2/M Age: - |
FAM98A | 0.954 | - | - | - | - | 0.954 | - | Mlig455_029305 {REF} {Length: 2999} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF2465) [PF10239.11, score=263.2]} {Human: ENSG00000119812, FAM98A, family with sequence similarity 98 member A, [RH, Score=174, Expect=3e-48]} {Mouse: ENSMUSG00000002017, Fam98a, family with sequence similarity 98, member A, [RH, Score=171, Expect=2e-47]} {Smed: dd_Smed_v6_5345_0_1, dd_Smed_v6_5345_0_1, [RH, Score=184, Expect=7e-53]} {RNA1509_14032, RNA1509_15449} {RNA1310_20527, RNA1509_15449} {RNA1509_15449, RNA815_42317} Mlig455_029328 {REF} {Length: 2925} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF2465) [PF10239.11, score=261.9]} {Human: ENSG00000119812, FAM98A, family with sequence similarity 98 member A, [Score=174, Expect=5e-48]} {Mouse: ENSMUSG00000002017, Fam98a, family with sequence similarity 98, member A, [RH, Score=173, Expect=5e-48]} {Smed: dd_Smed_v6_5345_0_1, dd_Smed_v6_5345_0_1, [RH, Score=184, Expect=5e-53]} {RNA1509_14032, RNA1509_35497} {RNA1310_20527, RNA1509_14032, RNA1509_35497} {RNA1509_14032, RNA1509_35497, RNA815_42317} |
| 5. | MligTC455_32183 | 113 | 2.35 | Mlig455_003359 | Neo: - Age: - |
ABCB8 | 0.95 | - | - | - | - | 0.950 | - | Mlig455_003359 {REF} {Length: 2608} {TRANSSPLICED} {Pfam: ABC transporter transmembrane region [PF00664.25, score=158.7]; ABC transporter [PF00005.29, score=109.0]; RecF/RecN/SMC N terminal domain [PF02463.21, score=26.8]; AAA ATPase domain [PF13191.8, score=20.9]; Zeta toxin [PF06414.14, score=19.4]} {Human: ENSG00000197150, ABCB8, ATP binding cassette subfamily B member 8, [RH, Score=510, Expect=2e-171]} {Mouse: ENSMUSG00000028973, Abcb8, ATP-binding cassette, sub-family B (MDR/TAP), member 8, [RH, Score=516, Expect=5e-174]} {Dmel: FBgn0030403, CG1824, [RH, Score=511, Expect=2e-171]} {Celegans: WBGene00001816, haf-6, HAlF transporter (PGP related), [RH, Score=555, Expect=0.0]} {Smed: dd_Smed_v6_9641_0_1, dd_Smed_v6_9641_0_1, [RH, Score=510, Expect=1e-172]} {RNA1509_23971} {RNA1310_9111} {RNA815_6656} |
Berezikov Lab - 2020-2021 © ERIBA