TomoSeq data search

Data search

Results for MligTC455_44570

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_44570

400

8.33

Mlig455_013342

Neo: -

Age: -

Mlig455_013342 {REF} {Length: 1181} {RNA1310_138633} {RNA815_55653}

Cumulative graph for MligTC455_44570

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.717	3.498	0.18333	0.81311
RegionR2	0.035	3.498	0.84289	1.00000
RegionR3	0.347	3.498	0.69331	1.00000
RegionR4	1.245	3.498	0.23245	0.52629
RegionR5	0.959	3.498	0.27280	0.59838
RegionR6	1.177	3.498	0.17285	0.73099
RegionR7	0.239	3.498	0.76523	1.00000
RegionR8	1.714	3.498	0.10006	0.59409

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	6.094	3.498	0.18133	0.92306
RegenerationR2	1.501	3.498	0.02080	0.23645
RegenerationR3	-0.165	3.498	0.81732	0.98653
RegenerationR4	-0.173	3.498	0.81812	0.99289
RegenerationR5	-1.158	3.498	0.09619	0.47492
RegenerationR6	-0.56	3.498	0.42582	0.75525
RegenerationBL	-0.665	3.498	0.40058	0.76966
RegenerationTP	-0.553	3.498	0.51950	0.91382

Genes with expression patterns similar to MligTC455_44570

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_44570	400	8.33	Mlig455_013342	Neo: - Age: -		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_013342 {REF} {Length: 1181} {RNA1310_138633} {RNA815_55653}
2.	MligTC455_44184	101	2.11	Mlig455_012174	Neo: Irradiation Age: -	MGAT1	1.843	-	-	-	-	0.971	0.872	Mlig455_012174 {REF} {Length: 1520} {Pfam: GNT-I family [PF03071.17, score=64.8]; Lectin C-type domain [PF00059.23, score=39.5]} {Human: ENSG00000131446, MGAT1, mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, [Score=59.7, Expect=4e-09]} {Mouse: ENSMUSG00000020346, Mgat1, mannoside acetylglucosaminyltransferase 1, [Score=66.2, Expect=2e-11]} {Dmel: FBgn0034521, Mgat1, Mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 1, [Score=69.7, Expect=1e-12]} {Celegans: WBGene00001637, gly-12, GLYcosylation related; UDP-N-acetylglucosamine:a-3-D-mannoside b-1,2-N-acetylglucosaminyltransferase I, [Score=65.1, Expect=3e-11]} {Smed: dd_Smed_v6_12622_0_1, dd_Smed_v6_12622_0_1, [Score=64.3, Expect=4e-11]} {RNA1509_44523} {RNA1310_41618} {RNA815_32434}
3.	MligTC455_18962	688	14.32	Mlig455_027929	Neo: - Age: -		1.697	-	-	-	-	0.744	0.953	Mlig455_027929 {REF} {Length: 1285} {RNA1509_18336} {RNA1310_16542.1, RNA1509_18336} {RNA1509_18336, RNA815_28056}
4.	MligTC455_40424	474	9.88	Mlig455_029322	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.888	CALM2	0.97	-	-	-	-	-	0.970	Mlig455_029322 {REF} {Length: 1020} {Pfam: EF-hand domain pair [PF13833.8, score=26.5]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=69.7, Expect=2e-14]; ENSG00000160014, CALM3, calmodulin 3, [Score=68.9, Expect=2e-14]; ENSG00000198668, CALM1, calmodulin 1, [Score=68.9, Expect=2e-14]; ENSG00000178363, CALML3, calmodulin like 3, [Score=68.2, Expect=3e-14]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=70.5, Expect=1e-14]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=68.9, Expect=1e-14]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=68.9, Expect=1e-14]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=67.4, Expect=3e-14]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=67.8, Expect=2e-14]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=67.8, Expect=2e-14]} {RNA1509_16604} {RNA1310_33121} {RNA815_17390}
5.	MligTC455_37793	353	7.36	Mlig455_066109, Mlig455_068663	Neo: - Age: Up-Down-Down	HMCN1	0.969	-	-	-	-	0.969	-	Mlig455_066109 {REF} {Length: 7924} {Pfam: Thrombospondin type 1 domain [PF00090.21, score=408.1]; Spondin-like TSP1 domain [PF19028.2, score=285.5]; Polycystin cation channel [PF08016.14, score=239.7]; PLAT/LH2 domain [PF01477.25, score=86.7]; Thrombospondin type 1 domain [PF19030.2, score=78.4]; Ion transport protein [PF00520.33, score=42.7]} {Human: ENSG00000143341, HMCN1, hemicentin 1, [Score=360, Expect=8e-99]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=363, Expect=7e-100]} {Dmel: FBgn0284221, Sema5c, Semaphorin 5c, [Score=199, Expect=5e-51]} {Celegans: WBGene00000082, adt-1, ADAMTS family; ADT-1, [RH, Score=306, Expect=4e-84]} {Smed: dd_Smed_v6_13975_0_1, dd_Smed_v6_13975_0_1, [RH, Score=944, Expect=0.0]} {RNA1509_9601} {RNA1310_488} {RNA815_1711} Mlig455_068663 {REF} {Length: 7866} {Pfam: Thrombospondin type 1 domain [PF00090.21, score=423.7]; Spondin-like TSP1 domain [PF19028.2, score=299.7]; Thrombospondin type 1 domain [PF19030.2, score=92.3]; PLAT/LH2 domain [PF01477.25, score=23.1]} {Human: ENSG00000143341, HMCN1, hemicentin 1, [Score=338, Expect=1e-94]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=341, Expect=9e-96]} {Dmel: FBgn0284221, Sema5c, Semaphorin 5c, [Score=189, Expect=2e-48]} {Celegans: WBGene00000082, adt-1, ADAMTS family; ADT-1, [RH, Score=303, Expect=2e-84]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=282, Expect=3e-77]} {RNA1509_9601} {RNA1310_488} {RNA815_1711}
6.	MligTC455_21926	225	4.69	Mlig455_003629	Neo: - Age: -		0.964	-	-	-	-	0.964	-	Mlig455_003629 {REF} {Length: 2548} {RNA1509_15605} {RNA1310_4409.1} {RNA815_14135}
7.	MligTC455_21927	635	13.22	Mlig455_003835, Mlig455_033247	Neo: - Age: -	NEK1	0.964	-	-	-	-	0.964	-	Mlig455_003835 {REF} {Length: 3979} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=209.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=136.9]; ABC1 atypical kinase-like domain [PF03109.18, score=24.1]} {Human: ENSG00000137601, NEK1, NIMA related kinase 1, [Score=283, Expect=1e-79]} {Mouse: ENSMUSG00000031644, Nek1, NIMA (never in mitosis gene a)-related expressed kinase 1, [Score=286, Expect=1e-80]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=196, Expect=9e-52]} {Celegans: WBGene00022631, nekl-2, Serine/threonine-protein kinase nekl-2, [Score=204, Expect=2e-58]} {Smed: dd_Smed_v6_11366_0_1, dd_Smed_v6_11366_0_1, [Score=256, Expect=3e-71]} {RNA1509_15605} {RNA1310_4409.1} {RNA815_7286} Mlig455_033247 {REF} {Length: 4929} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=210.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=137.5]; ABC1 atypical kinase-like domain [PF03109.18, score=24.0]} {Human: ENSG00000137601, NEK1, NIMA related kinase 1, [Score=283, Expect=2e-79]} {Mouse: ENSMUSG00000031644, Nek1, NIMA (never in mitosis gene a)-related expressed kinase 1, [Score=282, Expect=4e-79]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=196, Expect=1e-51]} {Celegans: WBGene00022631, nekl-2, Serine/threonine-protein kinase nekl-2, [Score=204, Expect=3e-58]} {Smed: dd_Smed_v6_11366_0_1, dd_Smed_v6_11366_0_1, [Score=256, Expect=4e-71]} {RNA1509_15605, RNA1509_54860} {RNA1310_4409.1, RNA1509_15605, RNA1509_54860} {RNA1509_15605, RNA1509_54860, RNA815_7286}
8.	MligTC455_15662	187	3.89	Mlig455_030386	Neo: - Age: - Region-enriched R2: 3.832/0.01388 Regeneration-upregulated BL: 4.705 Regeneration-enriched BL: 4.705	NR2E1	0.962	-	-	-	-	0.962	-	Mlig455_030386 {REF} {Length: 2439} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=98.4]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=73.9]} {Human: ENSG00000112333, NR2E1, nuclear receptor subfamily 2 group E member 1, [RH, Score=190, Expect=8e-54]} {Mouse: ENSMUSG00000019803, Nr2e1, nuclear receptor subfamily 2, group E, member 1, [Score=190, Expect=2e-54]} {Dmel: FBgn0003720, tll, tailless, [RH, Score=205, Expect=3e-59]} {Celegans: WBGene00003657, nhr-67, Nuclear hormone receptor family member nhr-67, [RH, Score=194, Expect=1e-55]} {Smed: dd_Smed_v6_21347_0_1, dd_Smed_v6_21347_0_1, [RH, Score=189, Expect=4e-54]} {RNA1509_39776} {RNA1310_21550} {RNA815_27099.1}
9.	MligTC455_36140	362	7.54	Mlig455_067735	Neo: - Age: logFC(26M/2M)=-0.366	MGAT1	0.961	-	-	-	-	0.961	-	Mlig455_067735 {REF} {Length: 2083} {Pfam: GNT-I family [PF03071.17, score=235.7]; Glycosyltransferase like family 2 [PF13641.8, score=24.3]; N-acetylglucosaminyltransferase II (MGAT2) [PF05060.16, score=20.9]} {Human: ENSG00000131446, MGAT1, mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, [Score=166, Expect=7e-46]} {Mouse: ENSMUSG00000020346, Mgat1, mannoside acetylglucosaminyltransferase 1, [Score=181, Expect=1e-51]} {Dmel: FBgn0034521, Mgat1, Mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 1, [Score=172, Expect=5e-48]} {Celegans: WBGene00001637, gly-12, GLYcosylation related; UDP-N-acetylglucosamine:a-3-D-mannoside b-1,2-N-acetylglucosaminyltransferase I, [Score=171, Expect=6e-48]} {Smed: dd_Smed_v6_13024_0_1, dd_Smed_v6_13024_0_1, [Score=159, Expect=8e-44]} {RNA1310_12882.2} {RNA815_5789.1}
10.	MligTC455_25452	649	13.52	Mlig455_021520	Neo: - Age: logFC(26M/2M)=0.444 Region-enriched R5: 1.068/0.03144		0.959	-	-	-	0.959	-	-	Mlig455_021520 {REF} {Length: 2250} {TRANSSPLICED} {RNA1509_20029, RNA1509_46521} {RNA1310_11367, RNA1509_20029, RNA1509_46521} {RNA1509_20029, RNA1509_46521, RNA815_3706}
11.	MligTC455_42114	188	3.92	Mlig455_034293	Neo: - Age: Down-Up-Up		0.956	-	-	-	-	0.956	-	Mlig455_034293 {REF} {Length: 1926} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=89.5]} {Dmel: FBgn0032506, CG9395, [Score=87.4, Expect=7e-18]} {Celegans: WBGene00008763, F13G3.3, Glycosyltransferase family 92 protein F13G3.3, [RH, Score=49.7, Expect=4e-06]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=198, Expect=4e-58]} {RNA1310_14481.1} {RNA815_5740.1}
12.	MligTC455_33335	312	6.49	Mlig455_050543, Mlig455_067586, Mlig455_067622	Neo: - Age: -	NYNRIN	0.955	-	-	-	-	0.955	-	Mlig455_050543 {REF} {Length: 559} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=121.0]; Integrase zinc binding domain [PF17921.3, score=78.5]; Integrase core domain [PF00665.28, score=50.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [RH, Score=129, Expect=3e-29]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [RH, Score=131, Expect=5e-30]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=203, Expect=4e-56]} {RNA1509_38652} {RNA1310_115251} {RNA815_57269} Mlig455_067586 {REF} {Length: 684} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=121.0]; Integrase zinc binding domain [PF17921.3, score=78.5]; Integrase core domain [PF00665.28, score=50.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [RH, Score=129, Expect=3e-29]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [RH, Score=131, Expect=5e-30]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=203, Expect=4e-56]} {RNA1509_38652} {RNA1310_115251} {RNA815_57269} Mlig455_067622 {REF} {Length: 580} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=121.0]; Integrase zinc binding domain [PF17921.3, score=78.5]; Integrase core domain [PF00665.28, score=50.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [RH, Score=129, Expect=3e-29]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [RH, Score=131, Expect=5e-30]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=203, Expect=4e-56]} {RNA1509_38652} {RNA1310_115251} {RNA815_57269}
13.	MligTC455_42115	167	3.49	Mlig455_034257	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_034257 {REF} {Length: 1854} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=88.5]} {Dmel: FBgn0032506, CG9395, [Score=84.0, Expect=8e-17]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=204, Expect=1e-60]} {RNA1310_14481.1} {RNA815_5740.1}
14.	MligTC455_10796	711	14.82	Mlig455_044153	Neo: Int S/G2/M Age: - Region-enriched R5: 1.235/0.00582	VPS72	0.952	-	-	-	0.952	-	-	Mlig455_044153 {REF} {Length: 1698} {TRANSSPLICED} {Pfam: YL1 nuclear protein [PF05764.15, score=116.5]; YL1 nuclear protein C-terminal domain [PF08265.13, score=39.3]} {Human: ENSG00000163159, VPS72, vacuolar protein sorting 72 homolog, [RH, Score=140, Expect=1e-36]} {Mouse: ENSMUSG00000008958, Vps72, vacuolar protein sorting 72, [RH, Score=134, Expect=8e-35]} {Dmel: FBgn0032321, YL-1, [RH, Score=102, Expect=1e-23]} {Smed: dd_Smed_v6_6198_0_1, dd_Smed_v6_6198_0_1, [RH, Score=171, Expect=5e-49]} {RNA1509_3049, RNA1509_56403, RNA1509_56647, RNA1509_59481} {RNA1310_18768, RNA1509_3049, RNA1509_56403, RNA1509_56647, RNA1509_59481} {RNA1509_3049, RNA1509_56403, RNA1509_56647, RNA1509_59481, RNA815_24353}
15.	MligTC455_17057	399	8.31	Mlig455_052073	Neo: - Age: - Region-enriched R2: 3.347/0.00011	CCDC153	0.951	-	-	-	-	-	0.951	Mlig455_052073 {REF} {Length: 1504} {TRANSSPLICED} {Pfam: Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain [PF16454.7, score=20.6]; Baculovirus polyhedron envelope protein, PEP, C terminus [PF04513.14, score=18.8]} {Human: ENSG00000248712, CCDC153, coiled-coil domain containing 153, [RH, Score=51.6, Expect=1e-07]} {Mouse: ENSMUSG00000070306, Ccdc153, coiled-coil domain containing 153, [RH, Score=67.4, Expect=1e-13]} {Smed: dd_Smed_v6_6974_0_1, dd_Smed_v6_6974_0_1, [RH, Score=89.7, Expect=2e-22]} {RNA1509_20719, RNA1509_24357} {RNA1310_27583.2, RNA1509_20719, RNA1509_24357} {RNA1509_20719, RNA1509_24357, RNA815_17925}

Berezikov Lab - 2020-2021 © ERIBA