TomoSeq data search

Data search

Results for MligTC455_44642

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_44642	398	8.30	Mlig455_012545	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.464	SLC28A1	Mlig455_012545 {REF} {Length: 3167} {Pfam: Na+ dependent nucleoside transporter C-terminus [PF07662.15, score=156.1]; Na+ dependent nucleoside transporter N-terminus [PF01773.22, score=73.8]; Nucleoside recognition [PF07670.16, score=23.7]} {Human: ENSG00000156222, SLC28A1, solute carrier family 28 member 1, [Score=330, Expect=1e-104]; ENSG00000137860, SLC28A2, solute carrier family 28 member 2, [Score=319, Expect=2e-100]; ENSG00000197506, SLC28A3, solute carrier family 28 member 3, [Score=318, Expect=1e-99]} {Mouse: ENSMUSG00000027219, Slc28a2, solute carrier family 28 (sodium-coupled nucleoside transporter), member 2, [Score=339, Expect=4e-108]; ENSMUSG00000021553, Slc28a3, solute carrier family 28 (sodium-coupled nucleoside transporter), member 3, [Score=327, Expect=4e-103]; ENSMUSG00000025726, Slc28a1, solute carrier family 28 (sodium-coupled nucleoside transporter), member 1, [Score=325, Expect=4e-103]} {Dmel: FBgn0025709, CNT2, Concentrative nucleoside transporter 2, [Score=264, Expect=2e-80]} {Celegans: WBGene00017868, slc-28.2, Sodium/nucleoside cotransporter, [Score=203, Expect=5e-58]} {Smed: dd_Smed_v6_3508_0_1, dd_Smed_v6_3508_0_1, [Score=395, Expect=1e-130]} {RNA1509_59785} {RNA1310_7732} {RNA815_2578}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_44642

398

8.30

Mlig455_012545

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.464

SLC28A1

Mlig455_012545 {REF} {Length: 3167} {Pfam: Na+ dependent nucleoside transporter C-terminus [PF07662.15, score=156.1]; Na+ dependent nucleoside transporter N-terminus [PF01773.22, score=73.8]; Nucleoside recognition [PF07670.16, score=23.7]} {Human: ENSG00000156222, SLC28A1, solute carrier family 28 member 1, [Score=330, Expect=1e-104]; ENSG00000137860, SLC28A2, solute carrier family 28 member 2, [Score=319, Expect=2e-100]; ENSG00000197506, SLC28A3, solute carrier family 28 member 3, [Score=318, Expect=1e-99]} {Mouse: ENSMUSG00000027219, Slc28a2, solute carrier family 28 (sodium-coupled nucleoside transporter), member 2, [Score=339, Expect=4e-108]; ENSMUSG00000021553, Slc28a3, solute carrier family 28 (sodium-coupled nucleoside transporter), member 3, [Score=327, Expect=4e-103]; ENSMUSG00000025726, Slc28a1, solute carrier family 28 (sodium-coupled nucleoside transporter), member 1, [Score=325, Expect=4e-103]} {Dmel: FBgn0025709, CNT2, Concentrative nucleoside transporter 2, [Score=264, Expect=2e-80]} {Celegans: WBGene00017868, slc-28.2, Sodium/nucleoside cotransporter, [Score=203, Expect=5e-58]} {Smed: dd_Smed_v6_3508_0_1, dd_Smed_v6_3508_0_1, [Score=395, Expect=1e-130]} {RNA1509_59785} {RNA1310_7732} {RNA815_2578}

Cumulative graph for MligTC455_44642

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-5.854	3.389	0.15033	0.76543
RegionR2	1.201	3.389	0.17988	0.53023
RegionR3	0.874	3.389	0.32163	0.85923
RegionR4	0.137	3.389	0.80389	1.00000
RegionR5	0.792	3.389	0.36270	0.71507
RegionR6	0.523	3.389	0.57934	1.00000
RegionR7	1.395	3.389	0.14595	0.71026
RegionR8	0.931	3.389	0.47296	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	5.904	3.389	0.18762	0.92780
RegenerationR2	0.027	3.389	0.96055	1.00000
RegenerationR3	0.389	3.389	0.48588	0.85333
RegenerationR4	1.13	3.389	0.05061	0.36168
RegenerationR5	0.238	3.389	0.65992	0.93623
RegenerationR6	1.069	3.389	0.06229	0.31329
RegenerationBL	1.178	3.389	0.04443	0.24095
RegenerationTP	-0.243	3.389	0.75577	1.00000

Genes with expression patterns similar to MligTC455_44642

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_44642	398	8.3	Mlig455_012545	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.464	SLC28A1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_012545 {REF} {Length: 3167} {Pfam: Na+ dependent nucleoside transporter C-terminus [PF07662.15, score=156.1]; Na+ dependent nucleoside transporter N-terminus [PF01773.22, score=73.8]; Nucleoside recognition [PF07670.16, score=23.7]} {Human: ENSG00000156222, SLC28A1, solute carrier family 28 member 1, [Score=330, Expect=1e-104]; ENSG00000137860, SLC28A2, solute carrier family 28 member 2, [Score=319, Expect=2e-100]; ENSG00000197506, SLC28A3, solute carrier family 28 member 3, [Score=318, Expect=1e-99]} {Mouse: ENSMUSG00000027219, Slc28a2, solute carrier family 28 (sodium-coupled nucleoside transporter), member 2, [Score=339, Expect=4e-108]; ENSMUSG00000021553, Slc28a3, solute carrier family 28 (sodium-coupled nucleoside transporter), member 3, [Score=327, Expect=4e-103]; ENSMUSG00000025726, Slc28a1, solute carrier family 28 (sodium-coupled nucleoside transporter), member 1, [Score=325, Expect=4e-103]} {Dmel: FBgn0025709, CNT2, Concentrative nucleoside transporter 2, [Score=264, Expect=2e-80]} {Celegans: WBGene00017868, slc-28.2, Sodium/nucleoside cotransporter, [Score=203, Expect=5e-58]} {Smed: dd_Smed_v6_3508_0_1, dd_Smed_v6_3508_0_1, [Score=395, Expect=1e-130]} {RNA1509_59785} {RNA1310_7732} {RNA815_2578}
2.	MligTC455_44643	536	11.17	Mlig455_070222	Neo: - Age: -		4.453	0.721	0.961	0.899	-	0.905	0.967	Mlig455_070222 {REF} {Length: 1253} {RNA1509_59785} {RNA1310_13499.1} {RNA815_8470}
3.	MligTC455_44689	194	4.05	Mlig455_048802	Neo: - Age: -	NKRF	0.956	0.956	-	-	-	-	-	Mlig455_048802 {REF} {Length: 3088} {TRANSSPLICED} {Pfam: XRN-Two Binding Domain, XTBD [PF11952.10, score=48.3]; G-patch domain [PF01585.25, score=30.8]; G-patch domain [PF12656.9, score=30.8]; R3H domain [PF01424.24, score=23.8]} {Human: ENSG00000186416, NKRF, NFKB repressing factor, [RH, Score=79.0, Expect=7e-15]} {Mouse: ENSMUSG00000044149, Nkrf, NF-kappaB repressing factor, [RH, Score=80.5, Expect=1e-15]} {Celegans: WBGene00013224, Y55D9A.2, [Score=49.7, Expect=3e-06]} {Smed: dd_Smed_v6_10443_0_1, dd_Smed_v6_10443_0_1, [RH, Score=95.9, Expect=5e-21]} {RNA1509_22309} {RNA1310_17483.1, RNA1509_22309} {RNA1509_22309, RNA815_7028}
4.	MligTC455_31321	143	2.98	Mlig455_051428	Neo: - Age: -		0.955	0.955	-	-	-	-	-	Mlig455_051428 {REF} {Length: 1426} {RNA1509_14413} {RNA1310_10720.1} {RNA815_3565}
5.	MligTC455_19195	96	2	Mlig455_006487	Neo: - Age: Up-Down-Down	NIPSNAP3A	0.954	0.954	-	-	-	-	-	Mlig455_006487 {REF} {Length: 2920} {tRNA: Leu(AAG),pseudo, score=21.7} {Pfam: NIPSNAP [PF07978.15, score=74.8]} {Human: ENSG00000136783, NIPSNAP3A, nipsnap homolog 3A, [RH, Score=59.7, Expect=2e-10]} {Mouse: ENSMUSG00000015242, Nipsnap3a, nipsnap homolog 3A, [RH, Score=54.3, Expect=1e-08]} {RNA1509_39070, RNA1509_43812} {RNA1310_35631, RNA1509_43812} {RNA1509_43812, RNA815_21493}
6.	MligTC455_43957	514	10.7	Mlig455_068253	Neo: - Age: Down-Down-Up Region-enriched R4: 2.100/0.03935	EIF2S1	0.951	0.951	-	-	-	-	-	Mlig455_068253 {REF} {Length: 1149} {TRANSSPLICED} {Pfam: Eukaryotic translation initiation factor 2 alpha subunit [PF07541.14, score=116.9]; S1 RNA binding domain [PF00575.25, score=54.7]} {Human: ENSG00000134001, EIF2S1, eukaryotic translation initiation factor 2 subunit alpha, [RH, Score=396, Expect=1e-138]} {Mouse: ENSMUSG00000021116, Eif2s1, eukaryotic translation initiation factor 2, subunit 1 alpha, [RH, Score=397, Expect=6e-139]} {Dmel: FBgn0261609, eIF2alpha, eukaryotic translation initiation factor 2 subunit alpha, [RH, Score=366, Expect=9e-127]} {Celegans: WBGene00021351, eif-2alpha, Eukaryotic Initiation Factor, [RH, Score=352, Expect=3e-121]} {Smed: dd_Smed_v6_6582_0_1, dd_Smed_v6_6582_0_1, [RH, Score=362, Expect=6e-126]} {RNA1509_647} {RNA1310_25632} {RNA815_12567}