M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44846

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44846 1050 21.87 Mlig455_029497

Neo: -

Age: logFC(26M/2M)=0.220

 POLDIP2 Mlig455_029497 {REF} {Length: 2353} {TRANSSPLICED} {Pfam: ApaG domain [PF04379.16, score=71.4]; Hemimethylated DNA-binding protein YccV like [PF08755.13, score=32.8]} {Human: ENSG00000004142, POLDIP2, DNA polymerase delta interacting protein 2, [RH, Score=200, Expect=8e-60]} {Mouse: ENSMUSG00000001100, Poldip2, polymerase (DNA-directed), delta interacting protein 2, [RH, Score=201, Expect=2e-60]} {Dmel: FBgn0037329, POLDIP2, Polymerase (DNA-directed), delta interacting protein 2, [RH, Score=197, Expect=2e-58]} {Celegans: WBGene00022787, tag-307, [RH, Score=125, Expect=2e-32]} {RNA1509_4716} {RNA1310_23006.1, RNA1509_4716} {RNA1509_4716, RNA815_8257}

Cumulative graph for MligTC455_44846

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.289 4.757 0.73913 1.00000
RegionR2 -0.527 4.757 0.18290 0.53407
RegionR3 -0.093 4.757 0.77079 1.00000
RegionR4 0.852 4.757 0.02729 0.12693
RegionR5 0.628 4.757 0.02946 0.12797
RegionR6 0.231 4.757 0.46504 1.00000
RegionR7 -0.49 4.757 0.23502 0.85968
RegionR8 -0.311 4.757 0.52039 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.659 4.757 0.03590 0.64953
RegenerationR2 -0.381 4.757 0.28609 0.72895
RegenerationR3 -1.064 4.757 0.00585 0.13769
RegenerationR4 -0.666 4.757 0.08556 0.46108
RegenerationR5 -0.329 4.757 0.34284 0.75957
RegenerationR6 -0.65 4.757 0.08938 0.37278
RegenerationBL -0.461 4.757 0.30125 0.66439
RegenerationTP -0.033 4.757 0.94367 1.00000


Genes with expression patterns similar to MligTC455_44846

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44846 1050 21.87 Mlig455_029497

Neo: -

Age: logFC(26M/2M)=0.220

 POLDIP2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_029497 {REF} {Length: 2353} {TRANSSPLICED} {Pfam: ApaG domain [PF04379.16, score=71.4]; Hemimethylated DNA-binding protein YccV like [PF08755.13, score=32.8]} {Human: ENSG00000004142, POLDIP2, DNA polymerase delta interacting protein 2, [RH, Score=200, Expect=8e-60]} {Mouse: ENSMUSG00000001100, Poldip2, polymerase (DNA-directed), delta interacting protein 2, [RH, Score=201, Expect=2e-60]} {Dmel: FBgn0037329, POLDIP2, Polymerase (DNA-directed), delta interacting protein 2, [RH, Score=197, Expect=2e-58]} {Celegans: WBGene00022787, tag-307, [RH, Score=125, Expect=2e-32]} {RNA1509_4716} {RNA1310_23006.1, RNA1509_4716} {RNA1509_4716, RNA815_8257}
2. MligTC455_44847 1057 22.03 Mlig455_029517

Neo: -

Age: -

 POLDIP2 5.703 0.994 0.961 0.995 0.985 0.790 0.978 Mlig455_029517 {REF} {Length: 2592} {Pfam: ApaG domain [PF04379.16, score=71.2]; Hemimethylated DNA-binding protein YccV like [PF08755.13, score=33.2]} {Human: ENSG00000004142, POLDIP2, DNA polymerase delta interacting protein 2, [RH, Score=202, Expect=2e-60]} {Mouse: ENSMUSG00000001100, Poldip2, polymerase (DNA-directed), delta interacting protein 2, [RH, Score=203, Expect=5e-61]} {Dmel: FBgn0037329, POLDIP2, Polymerase (DNA-directed), delta interacting protein 2, [RH, Score=200, Expect=1e-59]} {Celegans: WBGene00022787, tag-307, [RH, Score=127, Expect=5e-33]} {RNA1509_4716} {RNA1310_23006.1} {RNA815_8257}
3. MligTC455_43414 776 16.17 Mlig455_046322

Neo: -

Age: -

 CDS2 1.723 - - - 0.772 - 0.951 Mlig455_046322 {REF} {Length: 3285} {Pfam: Cytidylyltransferase family [PF01148.22, score=272.9]} {Human: ENSG00000101290, CDS2, CDP-diacylglycerol synthase 2, [RH, Score=461, Expect=4e-160]; ENSG00000163624, CDS1, CDP-diacylglycerol synthase 1, [RH, Score=445, Expect=2e-153]} {Mouse: ENSMUSG00000058793, Cds2, CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2, [RH, Score=460, Expect=3e-160]; ENSMUSG00000029330, Cds1, CDP-diacylglycerol synthase 1, [RH, Score=446, Expect=2e-154]} {Dmel: FBgn0010350, CdsA, CDP diglyceride synthetase, [RH, Score=483, Expect=6e-169]} {Celegans: WBGene00016384, cdgs-1, Phosphatidate cytidylyltransferase, [RH, Score=439, Expect=8e-152]} {Smed: dd_Smed_v6_4856_0_2, dd_Smed_v6_4856_0_2, [RH, Score=556, Expect=0.0]} {RNA1509_36952, RNA1509_58742} {RNA1310_4672, RNA1509_58742} {RNA1509_58742, RNA815_3501}
4. MligTC455_54023 1658 34.53 Mlig455_036037, Mlig455_036128

Neo: -

Age: -

Region-enriched R2: 1.417/0.01121

 NDUFV1 0.966 - - - 0.966 - -

Mlig455_036037 {REF} {Length: 2267} {TRANSSPLICED} {Pfam: Respiratory-chain NADH dehydrogenase 51 Kd subunit [PF01512.19, score=168.0]; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region [PF10589.11, score=104.1]; SLBB domain [PF10531.11, score=26.9]} {Human: ENSG00000167792, NDUFV1, NADH:ubiquinone oxidoreductase core subunit V1, [RH, Score=751, Expect=0.0]} {Mouse: ENSMUSG00000037916, Ndufv1, NADH:ubiquinone oxidoreductase core subunit V1, [RH, Score=756, Expect=0.0]} {Dmel: FBgn0031771, ND-51, NADH dehydrogenase (ubiquinone) 51 kDa subunit, [RH, Score=752, Expect=0.0]} {Celegans: WBGene00003831, nuo-1, NADH Ubiquinone Oxidoreductase, [RH, Score=758, Expect=0.0]} {Smed: dd_Smed_v6_1843_0_1, dd_Smed_v6_1843_0_1, [RH, Score=747, Expect=0.0]} {RNA1509_22894, RNA1509_3328, RNA1509_34454} {RNA1310_12593.1, RNA1509_22894, RNA1509_34454} {RNA1509_22894, RNA1509_34454, RNA815_3862}

Mlig455_036128 {REF} {Length: 2268} {TRANSSPLICED} {Pfam: Respiratory-chain NADH dehydrogenase 51 Kd subunit [PF01512.19, score=168.0]; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region [PF10589.11, score=104.1]; SLBB domain [PF10531.11, score=26.9]} {Human: ENSG00000167792, NDUFV1, NADH:ubiquinone oxidoreductase core subunit V1, [RH, Score=751, Expect=0.0]} {Mouse: ENSMUSG00000037916, Ndufv1, NADH:ubiquinone oxidoreductase core subunit V1, [RH, Score=757, Expect=0.0]} {Dmel: FBgn0031771, ND-51, NADH dehydrogenase (ubiquinone) 51 kDa subunit, [RH, Score=752, Expect=0.0]} {Celegans: WBGene00003831, nuo-1, NADH Ubiquinone Oxidoreductase, [RH, Score=759, Expect=0.0]} {Smed: dd_Smed_v6_1843_0_1, dd_Smed_v6_1843_0_1, [RH, Score=746, Expect=0.0]} {RNA1509_17606, RNA1509_3328} {RNA1310_12593.1, RNA1509_17606, RNA1509_3328} {RNA1509_17606, RNA1509_3328, RNA815_3862}
5. MligTC455_48162 2913 60.68 Mlig455_029077

Neo: Int S/G2/M

Age: -

 MAPRE3 0.96 - - - - - 0.960 Mlig455_029077 {REF} {Length: 2641} {TRANSSPLICED} {Pfam: EB1-like C-terminal motif [PF03271.19, score=50.2]; Calponin homology (CH) domain [PF00307.33, score=46.7]} {Human: ENSG00000084764, MAPRE3, microtubule associated protein RP/EB family member 3, [RH, Score=261, Expect=2e-86]} {Mouse: ENSMUSG00000029166, Mapre3, microtubule-associated protein, RP/EB family, member 3, [RH, Score=261, Expect=2e-86]} {Dmel: FBgn0027066, Eb1, [RH, Score=280, Expect=1e-93]} {Celegans: WBGene00013344, ebp-1, Microtubule End Binding Protein, [RH, Score=240, Expect=6e-78]} {Smed: dd_Smed_v6_1322_0_2, dd_Smed_v6_1322_0_2, [RH, Score=324, Expect=5e-111]} {RNA1509_5689} {RNA1310_26169.1, RNA1509_5689} {RNA1509_5689, RNA815_7966.1}
6. MligTC455_42692 297 6.2 Mlig455_027473

Neo: Irradiation

Age: Up-Down-Down

 GCFC2 0.953 0.953 - - - - - Mlig455_027473 {REF} {Length: 3517} {TRANSSPLICED} {Pfam: GC-rich sequence DNA-binding factor-like protein [PF07842.14, score=37.9]} {Human: ENSG00000005436, GCFC2, GC-rich sequence DNA-binding factor 2, [RH, Score=178, Expect=5e-46]} {Mouse: ENSMUSG00000035125, Gcfc2, GC-rich sequence DNA binding factor 2, [RH, Score=172, Expect=3e-44]; ENSMUSG00000022974, Paxbp1, PAX3 and PAX7 binding protein 1, [RH, Score=168, Expect=1e-42]} {Dmel: FBgn0037466, CG1965, [RH, Score=154, Expect=2e-38]} {Celegans: WBGene00009672, F43G9.12, [RH, Score=125, Expect=4e-29]} {Smed: dd_Smed_v6_11179_0_1, dd_Smed_v6_11179_0_1, [RH, Score=202, Expect=1e-54]} {RNA1509_16602, RNA1509_20486, RNA1509_28455} {RNA1310_5802.1, RNA1509_16602, RNA1509_20486, RNA1509_28455} {RNA1509_16602, RNA1509_20486, RNA1509_28455, RNA815_7547}
7. MligTC455_40570 840 17.51 Mlig455_012265, Mlig455_012710, Mlig455_054461

Neo: -

Age: Down-Up-Up

Region-enriched R2: 2.275/0.00464

 BUD31, SMOX 0.95 - - - 0.950 - -

Mlig455_012265 {REF} {Length: 722} {Pfam: Lectin C-type domain [PF00059.23, score=35.8]} {Smed: dd_Smed_v6_85740_0_1, dd_Smed_v6_85740_0_1, [Score=45.8, Expect=2e-06]} {RNA1509_20946} {RNA1310_41618} {RNA815_32434}

Mlig455_012710 {REF} {Length: 2074} {TRANSSPLICED} {Pfam: G10 protein [PF01125.19, score=210.3]} {Human: ENSG00000106245, BUD31, BUD31 homolog, [RH, Score=246, Expect=3e-85]} {Mouse: ENSMUSG00000038722, Bud31, BUD31 homolog, [RH, Score=246, Expect=2e-85]} {Dmel: FBgn0001491, l(1)10Bb, lethal (1) 10Bb, [RH, Score=246, Expect=3e-85]} {Celegans: WBGene00007400, bud-31, Protein BUD31 homolog, [RH, Score=220, Expect=5e-75]} {Smed: dd_Smed_v6_1359_0_1, dd_Smed_v6_1359_0_1, [RH, Score=228, Expect=2e-78]} {RNA1509_10529, RNA1509_4045} {RNA1310_32248, RNA1509_10529} {RNA1509_10529, RNA815_25391}

Mlig455_054461 {REF} {Length: 1413} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=102.0]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=50.6]; FAD dependent oxidoreductase [PF12831.9, score=29.8]; FAD binding domain [PF00890.26, score=27.0]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=24.1]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=23.0]; HI0933-like protein [PF03486.16, score=22.7]; FAD dependent oxidoreductase [PF01266.26, score=21.3]; FAD binding domain [PF01494.21, score=20.0]; Glucose inhibited division protein A [PF01134.24, score=17.9]} {Human: ENSG00000088826, SMOX, spermine oxidase, [Score=64.3, Expect=1e-10]} {Mouse: ENSMUSG00000025464, Paox, polyamine oxidase (exo-N4-amino), [Score=76.3, Expect=1e-14]} {Dmel: FBgn0035943, CG5653, [Score=84.7, Expect=1e-17]} {Smed: dd_Smed_v6_20536_0_1, dd_Smed_v6_20536_0_1, [Score=47.4, Expect=8e-06]} {RNA1509_44166} {RNA1310_52978} {RNA815_38183}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA