M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44936

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44936 30 0.62 Mlig455_000288

Neo: -

Age: -

 MAP1A Mlig455_000288 {REF} {Length: 1339} {Human: ENSG00000166963, MAP1A, microtubule associated protein 1A, [Score=48.1, Expect=9e-06]} {RNA1509_30568} {RNA1310_70061} {RNA815_48492}

Cumulative graph for MligTC455_44936

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.491 0.889 1.00000 1.00000
RegionR2 -0.494 0.889 0.89651 1.00000
RegionR3 0.903 0.889 0.82910 1.00000
RegionR4 2.703 0.889 0.34100 0.66116
RegionR5 1.282 0.889 0.33528 0.68118
RegionR6 -1.152 0.889 1.00000 1.00000
RegionR7 -1.89 0.889 0.99947 1.00000
RegionR8 0.139 0.889 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.98 0.889 0.99943 1.00000
RegenerationR2 -0.975 0.889 0.71485 0.96180
RegenerationR3 -2.48 0.889 0.82692 0.98987
RegenerationR4 -2.724 0.889 0.63075 0.92333
RegenerationR5 -1.953 0.889 0.69076 0.94823
RegenerationR6 0.579 0.889 0.51967 0.82034
RegenerationBL 1.209 0.889 0.69846 1.00000
RegenerationTP -1.995 0.889 0.99952 1.00000


Genes with expression patterns similar to MligTC455_44936

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44936 30 0.62 Mlig455_000288

Neo: -

Age: -

 MAP1A 3 - - 1.000 1.000 1.000 - Mlig455_000288 {REF} {Length: 1339} {Human: ENSG00000166963, MAP1A, microtubule associated protein 1A, [Score=48.1, Expect=9e-06]} {RNA1509_30568} {RNA1310_70061} {RNA815_48492}
2. MligTC455_22987 22 0.46 Mlig455_006174

Neo: -

Age: -

 0.972 - - - 0.972 - - Mlig455_006174 {REF} {Length: 1429} {RNA1509_32134} {RNA1310_21286.1}
3. MligTC455_15285 186 3.87 Mlig455_011736, Mlig455_070002

Neo: -

Age: -

 0.964 - - 0.964 - - -

Mlig455_011736 {REF} {Length: 1561} {RNA1310_39602} {RNA815_15338}

Mlig455_070002 {REF} {Length: 1114} {RNA1310_39602} {RNA815_15338}
4. MligTC455_16635 52 1.07 Mlig455_045243, Mlig455_069161

Neo: -

Age: -

 0.964 - - 0.964 - - -

Mlig455_045243 {REF} {Length: 679} {NoTransDecoderORF} {RNA1310_83936} {RNA815_48141}

Mlig455_069161 {REF} {Length: 1383} {NoTransDecoderORF} {RNA1509_25000} {RNA1310_83936} {RNA815_48141}
5. MligTC455_50875 99 2.05 Mlig455_066419

Neo: -

Age: -

 0.964 - - 0.964 - - - Mlig455_066419 {REF} {Length: 1122} {NoTransDecoderORF} {RNA1509_21226} {RNA1310_71629} {RNA815_14011}
6. MligTC455_48104 65 1.36 Mlig455_005849

Neo: -

Age: -

 0.963 - - 0.963 - - - Mlig455_005849 {REF} {Length: 754} {NoTransDecoderORF} {RNA1310_91306} {RNA815_50835}
7. MligTC455_01405 72 1.51 Mlig455_040777

Neo: -

Age: -

 0.962 - - 0.962 - - - Mlig455_040777 {REF} {Length: 274} {NoTransDecoderORF} {RNA1509_34939} {RNA1310_613.1} {RNA815_5431}
8. MligTC455_46677 289 6.03 Mlig455_051584, Mlig455_051616

Neo: -

Age: -

 EIPR1 0.961 - - 0.961 - - -

Mlig455_051584 {REF} {Length: 1624} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=41.7]} {Human: ENSG00000032389, EIPR1, EARP complex and GARP complex interacting protein 1, [Score=239, Expect=3e-75]} {Mouse: ENSMUSG00000036613, Eipr1, EARP complex and GARP complex interacting protein 1, [Score=249, Expect=2e-79]} {Dmel: FBgn0036292, CG10646, [Score=189, Expect=2e-56]} {Celegans: WBGene00013599, eipr-1, EARP-interacting protein 1, [Score=164, Expect=3e-47]} {Smed: dd_Smed_v6_5088_0_4, dd_Smed_v6_5088_0_4, [Score=209, Expect=2e-64]} {RNA1509_20404} {RNA1310_20782.2} {RNA815_5962.1}

Mlig455_051616 {REF} {Length: 2069} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=44.5]} {Human: ENSG00000032389, EIPR1, EARP complex and GARP complex interacting protein 1, [RH, Score=268, Expect=4e-86]} {Mouse: ENSMUSG00000036613, Eipr1, EARP complex and GARP complex interacting protein 1, [RH, Score=281, Expect=3e-91]} {Dmel: FBgn0036292, CG10646, [RH, Score=218, Expect=6e-67]} {Celegans: WBGene00013599, eipr-1, EARP-interacting protein 1, [RH, Score=182, Expect=1e-53]} {Smed: dd_Smed_v6_5088_0_4, dd_Smed_v6_5088_0_4, [RH, Score=234, Expect=3e-73]} {RNA1509_20404} {RNA1310_20782.2} {RNA815_5962.1}
9. MligTC455_36527 56 1.16 Mlig455_017613

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_017613 {REF} {Length: 1129} {NoTransDecoderORF} {RNA1509_40709} {RNA1310_18972} {RNA815_34163}
10. MligTC455_19470 80 1.66 Mlig455_002707

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_002707 {REF} {Length: 260} {NoTransDecoderORF} {RNA1509_46200} {RNA1310_613.1} {RNA815_5431}
11. MligTC455_03600 172 3.59 Mlig455_031645

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.335

 NIT2 0.95 - - 0.950 - - - Mlig455_031645 {REF} {Length: 967} {TRANSSPLICED} {Pfam: Carbon-nitrogen hydrolase [PF00795.24, score=210.9]} {Human: ENSG00000114021, NIT2, nitrilase family member 2, [RH, Score=306, Expect=2e-104]} {Mouse: ENSMUSG00000022751, Nit2, nitrilase family, member 2, [RH, Score=308, Expect=4e-105]} {Dmel: FBgn0037687, CG8132, [RH, Score=271, Expect=8e-91]} {Celegans: WBGene00003594, nft-1, Nitrilase and fragile histidine triad fusion protein NitFhit Bis(5'-adenosyl)-triphosphatase Nitrilase homolog, [Score=156, Expect=2e-44]} {Smed: dd_Smed_v6_1734_0_1, dd_Smed_v6_1734_0_1, [RH, Score=263, Expect=7e-88]} {RNA1509_7842} {RNA1310_13706.2, RNA1509_7842} {RNA1509_7842, RNA815_18016}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA