M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44983

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44983 740 15.43 Mlig455_010999

Neo: -

Age: -

Region-enriched R5: 1.315/0.00191

 USO1 Mlig455_010999 {REF} {Length: 4161} {TRANSSPLICED} {Pfam: Uso1 / p115 like vesicle tethering protein, head region [PF04869.16, score=138.8]; Armadillo tether-repeat of vescicular transport factor [PF18770.3, score=90.5]; Uso1 / p115 like vesicle tethering protein, C terminal region [PF04871.15, score=37.7]; Initiation control protein YabA [PF06156.15, score=24.2]; Homeobox associated leucine zipper [PF02183.20, score=20.5]} {Human: ENSG00000138768, USO1, USO1 vesicle transport factor, [RH, Score=623, Expect=0.0]} {Mouse: ENSMUSG00000029407, Uso1, USO1 vesicle docking factor, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0040087, p115, [RH, Score=514, Expect=7e-169]} {Celegans: WBGene00010713, uso-1, USO1 (Yeast transport protein) homolog, [RH, Score=415, Expect=9e-131]} {Smed: dd_Smed_v6_7694_0_1, dd_Smed_v6_7694_0_1, [RH, Score=573, Expect=0.0]} {RNA1509_4920} {RNA1310_5117.1, RNA1509_4920} {RNA1509_4920, RNA815_6241}

Cumulative graph for MligTC455_44983

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.63 4.202 0.52099 1.00000
RegionR2 -0.109 4.202 0.82558 1.00000
RegionR3 0.168 4.202 0.67249 1.00000
RegionR4 0.174 4.202 0.69110 0.98258
RegionR5 1.315 4.202 0.00012 0.00191
RegionR6 0.341 4.202 0.39394 0.96809
RegionR7 -1.175 4.202 0.03492 0.35565
RegionR8 -0.084 4.202 0.87852 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.245 4.202 0.43282 1.00000
RegenerationR2 -0.317 4.202 0.48858 0.86728
RegenerationR3 -0.816 4.202 0.10073 0.50505
RegenerationR4 -0.166 4.202 0.73390 0.96562
RegenerationR5 -0.481 4.202 0.28044 0.70957
RegenerationR6 0.194 4.202 0.68222 0.91546
RegenerationBL -0.131 4.202 0.81693 1.00000
RegenerationTP -0.417 4.202 0.52203 0.91509


Genes with expression patterns similar to MligTC455_44983

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44983 740 15.43 Mlig455_010999

Neo: -

Age: -

Region-enriched R5: 1.315/0.00191

 USO1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_010999 {REF} {Length: 4161} {TRANSSPLICED} {Pfam: Uso1 / p115 like vesicle tethering protein, head region [PF04869.16, score=138.8]; Armadillo tether-repeat of vescicular transport factor [PF18770.3, score=90.5]; Uso1 / p115 like vesicle tethering protein, C terminal region [PF04871.15, score=37.7]; Initiation control protein YabA [PF06156.15, score=24.2]; Homeobox associated leucine zipper [PF02183.20, score=20.5]} {Human: ENSG00000138768, USO1, USO1 vesicle transport factor, [RH, Score=623, Expect=0.0]} {Mouse: ENSMUSG00000029407, Uso1, USO1 vesicle docking factor, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0040087, p115, [RH, Score=514, Expect=7e-169]} {Celegans: WBGene00010713, uso-1, USO1 (Yeast transport protein) homolog, [RH, Score=415, Expect=9e-131]} {Smed: dd_Smed_v6_7694_0_1, dd_Smed_v6_7694_0_1, [RH, Score=573, Expect=0.0]} {RNA1509_4920} {RNA1310_5117.1, RNA1509_4920} {RNA1509_4920, RNA815_6241}
2. MligTC455_44984 885 18.43 Mlig455_011032

Neo: -

Age: Up-Down-Up

Region-enriched R5: 1.312/0.00044

 USO1 4.547 0.798 0.998 0.829 0.990 - 0.932 Mlig455_011032 {REF} {Length: 3902} {Pfam: Uso1 / p115 like vesicle tethering protein, head region [PF04869.16, score=138.8]; Armadillo tether-repeat of vescicular transport factor [PF18770.3, score=90.5]; Uso1 / p115 like vesicle tethering protein, C terminal region [PF04871.15, score=36.1]; Initiation control protein YabA [PF06156.15, score=23.8]; Homeobox associated leucine zipper [PF02183.20, score=20.5]} {Human: ENSG00000138768, USO1, USO1 vesicle transport factor, [RH, Score=624, Expect=0.0]} {Mouse: ENSMUSG00000029407, Uso1, USO1 vesicle docking factor, [RH, Score=642, Expect=0.0]} {Dmel: FBgn0040087, p115, [RH, Score=513, Expect=1e-168]} {Celegans: WBGene00010713, uso-1, USO1 (Yeast transport protein) homolog, [RH, Score=415, Expect=1e-130]} {Smed: dd_Smed_v6_7694_0_1, dd_Smed_v6_7694_0_1, [RH, Score=573, Expect=0.0]} {RNA1509_4920} {RNA1310_5117.1} {RNA815_6241}
3. MligTC455_20121 1107 23.07 Mlig455_055488, Mlig455_055508

Neo: -

Age: -

 CCDC88A, CCDC88C 2.4 - - 0.739 0.959 - 0.702

Mlig455_055488 {REF} {Length: 3881} {Pfam: HOOK domain [PF19047.2, score=43.8]} {Human: ENSG00000115355, CCDC88A, coiled-coil domain containing 88A, [Score=95.1, Expect=2e-19]} {Mouse: ENSMUSG00000021182, Ccdc88c, coiled-coil domain containing 88C, [Score=105, Expect=9e-23]} {Dmel: FBgn0283724, Girdin, [Score=62.0, Expect=1e-09]} {Smed: dd_Smed_v6_3591_0_1, dd_Smed_v6_3591_0_1, [RH, Score=237, Expect=3e-69]} {RNA1509_55316, RNA1509_8799} {RNA1310_10467.1, RNA1509_55316} {RNA1509_55316, RNA815_3537}

Mlig455_055508 {REF} {Length: 3784} {Pfam: HOOK domain [PF19047.2, score=43.2]} {Human: ENSG00000015133, CCDC88C, coiled-coil domain containing 88C, [Score=99.8, Expect=6e-21]; ENSG00000115355, CCDC88A, coiled-coil domain containing 88A, [Score=95.1, Expect=2e-19]} {Mouse: ENSMUSG00000021182, Ccdc88c, coiled-coil domain containing 88C, [Score=106, Expect=4e-23]} {Dmel: FBgn0283724, Girdin, [Score=62.4, Expect=1e-09]} {Smed: dd_Smed_v6_3591_0_1, dd_Smed_v6_3591_0_1, [RH, Score=233, Expect=8e-68]} {RNA1509_31386, RNA1509_53959, RNA1509_54054, RNA1509_8799} {RNA1310_10467.1, RNA1509_31386, RNA1509_53959, RNA1509_54054} {RNA1509_31386, RNA1509_53959, RNA1509_54054, RNA815_3537}
4. MligTC455_21148 332 6.93 Mlig455_039576

Neo: -

Age: -

Region-enriched R4: 1.722/0.01281

 1.803 - - - 0.985 - 0.818 Mlig455_039576 {REF} {Length: 4764} {TRANSSPLICED} {tRNA: Glu(TTC), score=70.7} {Pfam: Mediator complex subunit 25 von Willebrand factor type A [PF11265.10, score=33.5]} {Smed: dd_Smed_v6_10165_0_1, dd_Smed_v6_10165_0_1, [RH, Score=89.4, Expect=3e-18]} {RNA1509_59973} {RNA1310_5708, RNA1509_59973} {RNA1509_59973, RNA815_16377}
5. MligTC455_44515 174 3.62 Mlig455_047077

Neo: Int S/G2/M

Age: Up-Down-Up

 TPR 1.795 - - - 0.844 - 0.951 Mlig455_047077 {REF} {Length: 7642} {Pfam: TPR/MLP1/MLP2-like protein [PF07926.14, score=37.3]} {Human: ENSG00000047410, TPR, translocated promoter region, nuclear basket protein, [Score=301, Expect=2e-81]} {Mouse: ENSMUSG00000006005, Tpr, translocated promoter region, nuclear basket protein, [Score=287, Expect=3e-77]} {Dmel: FBgn0013756, Mtor, Megator, [Score=148, Expect=5e-35]} {Smed: dd_Smed_v6_2899_0_1, dd_Smed_v6_2899_0_1, [RH, Score=214, Expect=3e-55]} {RNA1509_19964, RNA1509_33253, RNA1509_5248} {RNA1310_1101.1, RNA1509_19964, RNA1509_33253} {RNA1509_19964, RNA1509_33253, RNA815_2269}
6. MligTC455_50826 546 11.38 Mlig455_008149

Neo: Int S/G2/M

Age: Up-Down-Down, logFC(26M/2M)=-0.291

 RASA1 1.747 - - - 0.950 - 0.797 Mlig455_008149 {REF} {Length: 5538} {Pfam: SH2 domain [PF00017.26, score=55.8]; GTPase-activator protein for Ras-like GTPase [PF00616.21, score=37.5]; PH domain [PF00169.31, score=34.6]; SH3 domain [PF00018.30, score=28.2]; Variant SH3 domain [PF07653.19, score=21.2]} {Human: ENSG00000145715, RASA1, RAS p21 protein activator 1, [RH, Score=237, Expect=2e-65]} {Mouse: ENSMUSG00000021549, Rasa1, RAS p21 protein activator 1, [RH, Score=236, Expect=1e-64]} {Dmel: FBgn0003969, vap, vacuolar peduncle, [RH, Score=231, Expect=3e-63]} {Celegans: WBGene00001516, gap-2, Ras GTPase-activating protein gap-2, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_11115_0_3, dd_Smed_v6_11115_0_3, [Score=59.7, Expect=7e-09]} {RNA1509_23768, RNA1509_42857, RNA1509_55861, RNA1509_8665} {RNA1310_5186.1, RNA1509_23768, RNA1509_42857, RNA1509_55861, RNA1509_8665} {RNA1509_23768, RNA1509_42857, RNA1509_55861, RNA1509_8665, RNA815_1157}
7. MligTC455_48133 622 12.96 Mlig455_021421

Neo: -

Age: Down-Up-Down

 ZDHHC22 1.742 - - - 0.781 - 0.961 Mlig455_021421 {REF} {Length: 3172} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=86.9]} {Human: ENSG00000177108, ZDHHC22, zinc finger DHHC-type containing 22, [Score=72.4, Expect=3e-14]; ENSG00000174165, ZDHHC24, zinc finger DHHC-type containing 24, [Score=69.7, Expect=3e-13]} {Mouse: ENSMUSG00000006463, Zdhhc24, zinc finger, DHHC domain containing 24, [Score=75.5, Expect=2e-15]; ENSMUSG00000048483, Zdhhc22, zinc finger, DHHC-type containing 22, [Score=74.7, Expect=4e-15]} {Dmel: FBgn0039370, CG4956, [Score=81.3, Expect=2e-17]} {Celegans: WBGene00019344, dhhc-10, Palmitoyltransferase, [Score=84.7, Expect=9e-19]} {Smed: dd_Smed_v6_13359_0_1, dd_Smed_v6_13359_0_1, [Score=90.9, Expect=9e-21]} {RNA1509_45534} {RNA1310_25875, RNA1509_45534} {RNA1509_45534, RNA815_12363}
8. MligTC455_04366 654 13.63 Mlig455_052829

Neo: -

Age: -

 UPF2 0.958 - - - - - 0.958 Mlig455_052829 {REF} {Length: 4197} {TRANSSPLICED} {Pfam: MIF4G domain [PF02854.21, score=172.7]; Up-frameshift suppressor 2 [PF04050.16, score=29.1]} {Human: ENSG00000151461, UPF2, UPF2, regulator of nonsense mediated mRNA decay, [Score=651, Expect=0.0]} {Mouse: ENSMUSG00000043241, Upf2, UPF2 regulator of nonsense transcripts homolog (yeast), [Score=659, Expect=0.0]} {Dmel: FBgn0029992, Upf2, [Score=569, Expect=0.0]} {Celegans: WBGene00004881, smg-3, SMG-3; Suppressor with Morphological effect on Genitalia, [RH, Score=328, Expect=5e-94]} {Smed: dd_Smed_v6_7696_0_1, dd_Smed_v6_7696_0_1, [RH, Score=541, Expect=3e-172]} {RNA1509_10414} {RNA1310_2087} {RNA815_4700.1}
9. MligTC455_42289 636 13.25 Mlig455_027508

Neo: -

Age: -

Region-enriched R5: 1.036/0.00139

 SACM1L 0.957 - - - 0.957 - - Mlig455_027508 {REF} {Length: 2956} {Pfam: SacI homology domain [PF02383.20, score=269.3]} {Human: ENSG00000211456, SACM1L, SAC1 like phosphatidylinositide phosphatase, [RH, Score=532, Expect=0.0]} {Mouse: ENSMUSG00000025240, Sacm1l, SAC1 suppressor of actin mutations 1-like (yeast), [RH, Score=531, Expect=0.0]} {Dmel: FBgn0283500, Sac1, Sac1 phosphatase, [RH, Score=433, Expect=2e-145]} {Celegans: WBGene00009264, sac-1, SAC1 PIP phosphatase (Yeast Suppressor of ACtin) homolog, [RH, Score=404, Expect=6e-134]} {Smed: dd_Smed_v6_3882_0_1, dd_Smed_v6_3882_0_1, [RH, Score=459, Expect=1e-155]} {RNA1509_18875, RNA1509_25818, RNA1509_36443, RNA1509_54775} {RNA1310_3604.2, RNA1509_18875, RNA1509_25818, RNA1509_54775} {RNA1509_18875, RNA1509_25818, RNA1509_54775, RNA815_2551.1}
10. MligTC455_08564 389 8.09 Mlig455_068459

Neo: -

Age: -

 HPGD 0.954 - - - 0.954 - - Mlig455_068459 {REF} {Length: 2141} {TRANSSPLICED} {Pfam: short chain dehydrogenase [PF00106.27, score=152.1]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=109.7]; KR domain [PF08659.12, score=33.4]; NAD dependent epimerase/dehydratase family [PF01370.23, score=28.2]; Polysaccharide biosynthesis protein [PF02719.17, score=23.4]; GDP-mannose 4,6 dehydratase [PF16363.7, score=21.5]; 3-beta hydroxysteroid dehydrogenase/isomerase family [PF01073.21, score=20.2]} {Human: ENSG00000164120, HPGD, 15-hydroxyprostaglandin dehydrogenase, [RH, Score=163, Expect=7e-49]} {Mouse: ENSMUSG00000031613, Hpgd, hydroxyprostaglandin dehydrogenase 15 (NAD), [RH, Score=165, Expect=1e-49]} {Dmel: FBgn0011693, Pdh, Photoreceptor dehydrogenase, [RH, Score=115, Expect=2e-30]} {Celegans: WBGene00000968, dhs-4, DeHydrogenases, Short chain, [Score=94.4, Expect=1e-22]} {Smed: dd_Smed_v6_2263_0_1, dd_Smed_v6_2263_0_1, [Score=65.5, Expect=1e-12]} {RNA1509_35301} {RNA1310_40392} {RNA815_8749.1}
11. MligTC455_44505 766 15.96 Mlig455_006545

Neo: Irradiation

Age: -

Region-enriched R5: 1.371/0.00002

 NUP107 0.951 - - - 0.951 - - Mlig455_006545 {REF} {Length: 8013} {Pfam: Nuclear pore protein 84 / 107 [PF04121.15, score=367.2]} {Human: ENSG00000111581, NUP107, nucleoporin 107, [RH, Score=359, Expect=3e-109]} {Mouse: ENSMUSG00000052798, Nup107, nucleoporin 107, [RH, Score=358, Expect=1e-108]} {Dmel: FBgn0027868, Nup107, Nucleoporin 107kD, [RH, Score=265, Expect=3e-75]} {Smed: dd_Smed_v6_5070_0_1, dd_Smed_v6_5070_0_1, [RH, Score=206, Expect=3e-55]} {RNA1509_22557, RNA1509_33997, RNA1509_55961, RNA1509_7073} {RNA1310_4995, RNA1509_22557, RNA1509_33997, RNA1509_55961, RNA1509_7073} {RNA1509_22557, RNA1509_33997, RNA1509_55961, RNA1509_7073, RNA815_1737}
12. MligTC455_31499 4185 87.19 Mlig455_007762, Mlig455_056589, Mlig455_056611

Neo: -

Age: -

 PSMD4 0.95 - - - 0.950 - -

Mlig455_007762 {REF} {Length: 3355} {TRANSSPLICED} {Pfam: von Willebrand factor type A domain [PF13519.8, score=59.8]; RAP80 N-terminal ubiquitin interaction motif [PF18282.3, score=21.8]; Ubiquitin interaction motif [PF02809.22, score=20.7]} {Human: ENSG00000159352, PSMD4, proteasome 26S subunit, non-ATPase 4, [RH, Score=342, Expect=6e-115]} {Mouse: ENSMUSG00000005625, Psmd4, proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, [RH, Score=341, Expect=1e-114]} {Dmel: FBgn0015283, Rpn10, Regulatory particle non-ATPase 10, [RH, Score=317, Expect=6e-105]} {Celegans: WBGene00004466, rpn-10, 26S proteasome non-ATPase regulatory subunit 4, [RH, Score=214, Expect=9e-66]} {Smed: dd_Smed_v6_1231_0_1, dd_Smed_v6_1231_0_1, [RH, Score=245, Expect=6e-78]} {RNA1509_19280, RNA1509_20122, RNA1509_2886, RNA1509_8983} {RNA1310_11583, RNA1509_19280, RNA1509_20122, RNA1509_8983} {RNA1509_19280, RNA1509_20122, RNA1509_8983, RNA815_4417}

Mlig455_056589 {REF} {Length: 2304} {TRANSSPLICED} {Pfam: von Willebrand factor type A domain [PF13519.8, score=59.8]; RAP80 N-terminal ubiquitin interaction motif [PF18282.3, score=21.8]; Ubiquitin interaction motif [PF02809.22, score=20.7]} {Human: ENSG00000159352, PSMD4, proteasome 26S subunit, non-ATPase 4, [RH, Score=343, Expect=2e-115]} {Mouse: ENSMUSG00000005625, Psmd4, proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, [RH, Score=343, Expect=2e-115]} {Dmel: FBgn0015283, Rpn10, Regulatory particle non-ATPase 10, [RH, Score=318, Expect=2e-105]} {Celegans: WBGene00004466, rpn-10, 26S proteasome non-ATPase regulatory subunit 4, [RH, Score=213, Expect=1e-65]} {Smed: dd_Smed_v6_1231_0_1, dd_Smed_v6_1231_0_1, [RH, Score=246, Expect=6e-78]} {RNA1509_2886} {RNA1310_11583} {RNA815_4417}

Mlig455_056611 {REF} {Length: 2309} {TRANSSPLICED} {Pfam: von Willebrand factor type A domain [PF13519.8, score=59.8]; RAP80 N-terminal ubiquitin interaction motif [PF18282.3, score=21.8]; Ubiquitin interaction motif [PF02809.22, score=20.7]} {Human: ENSG00000159352, PSMD4, proteasome 26S subunit, non-ATPase 4, [RH, Score=343, Expect=2e-115]} {Mouse: ENSMUSG00000005625, Psmd4, proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, [RH, Score=343, Expect=2e-115]} {Dmel: FBgn0015283, Rpn10, Regulatory particle non-ATPase 10, [RH, Score=318, Expect=2e-105]} {Celegans: WBGene00004466, rpn-10, 26S proteasome non-ATPase regulatory subunit 4, [RH, Score=213, Expect=1e-65]} {Smed: dd_Smed_v6_1231_0_1, dd_Smed_v6_1231_0_1, [RH, Score=246, Expect=6e-78]} {RNA1509_14233, RNA1509_2886} {RNA1310_11583, RNA1509_14233, RNA1509_2886} {RNA1509_14233, RNA1509_2886, RNA815_4417}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA