M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45158

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45158 1399 29.14 Mlig455_034129

Neo: Neoblast, stringent

Age: Down-Up-Up, logFC(26M/2M)=0.340

Region-enriched R5: 1.184/0.00036

 HNRNPLL Mlig455_034129 {REF} {Length: 2321} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=55.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=52.2]; RRM-like domain [PF11835.10, score=20.6]; Occluded RNA-recognition motif [PF16842.7, score=18.8]} {Human: ENSG00000143889, HNRNPLL, heterogeneous nuclear ribonucleoprotein L like, [Score=119, Expect=2e-28]} {Mouse: ENSMUSG00000024095, Hnrnpll, heterogeneous nuclear ribonucleoprotein L-like, [Score=113, Expect=3e-26]; ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=113, Expect=3e-26]} {Dmel: FBgn0003435, sm, smooth, [Score=160, Expect=3e-43]} {Celegans: WBGene00016624, C44B7.2, [Score=114, Expect=5e-28]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=114, Expect=4e-27]} {RNA1509_5735} {RNA1310_13849, RNA1509_5735} {RNA1509_5735, RNA815_5732}

Cumulative graph for MligTC455_45158

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.308 5.071 0.69268 1.00000
RegionR2 -0.147 5.071 0.71402 1.00000
RegionR3 -0.166 5.071 0.61292 1.00000
RegionR4 0.254 5.071 0.46155 0.78952
RegionR5 1.184 5.071 0.00002 0.00036
RegionR6 0.116 5.071 0.72012 1.00000
RegionR7 -0.339 5.071 0.42253 1.00000
RegionR8 -0.595 5.071 0.28168 0.90820

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.667 5.071 0.20280 0.94291
RegenerationR2 -0.224 5.071 0.52323 0.88061
RegenerationR3 0.42 5.071 0.25711 0.69162
RegenerationR4 0.167 5.071 0.64389 0.92997
RegenerationR5 -0.171 5.071 0.60370 0.91154
RegenerationR6 0.287 5.071 0.43324 0.75981
RegenerationBL 0.697 5.071 0.08448 0.34053
RegenerationTP 0.292 5.071 0.54556 0.93033


Genes with expression patterns similar to MligTC455_45158

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45158 1399 29.14 Mlig455_034129

Neo: Neoblast, stringent

Age: Down-Up-Up, logFC(26M/2M)=0.340

Region-enriched R5: 1.184/0.00036

 HNRNPLL 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_034129 {REF} {Length: 2321} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=55.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=52.2]; RRM-like domain [PF11835.10, score=20.6]; Occluded RNA-recognition motif [PF16842.7, score=18.8]} {Human: ENSG00000143889, HNRNPLL, heterogeneous nuclear ribonucleoprotein L like, [Score=119, Expect=2e-28]} {Mouse: ENSMUSG00000024095, Hnrnpll, heterogeneous nuclear ribonucleoprotein L-like, [Score=113, Expect=3e-26]; ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=113, Expect=3e-26]} {Dmel: FBgn0003435, sm, smooth, [Score=160, Expect=3e-43]} {Celegans: WBGene00016624, C44B7.2, [Score=114, Expect=5e-28]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=114, Expect=4e-27]} {RNA1509_5735} {RNA1310_13849, RNA1509_5735} {RNA1509_5735, RNA815_5732}
2. MligTC455_11507 952 19.84 Mlig455_015077

Neo: -

Age: logFC(26M/2M)=0.443

Region-enriched R5: 1.508/0.00086

 2.534 0.743 - - - 0.953 0.838 Mlig455_015077 {REF} {Length: 363} {TRANSSPLICED} {RNA1509_35009} {RNA1310_22802} {RNA815_10583.1}
3. MligTC455_28935 350 7.3 Mlig455_001893

Neo: Int S/G2/M

Age: logFC(26M/2M)=-0.374

 1.674 0.711 - - - 0.963 - Mlig455_001893 {REF} {Length: 1894} {Pfam: Universal stress protein family [PF00582.28, score=78.8]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [Score=112, Expect=2e-32]} {RNA1509_16808, RNA1509_2764, RNA1509_31626} {RNA1310_13748, RNA1509_16808, RNA1509_31626} {RNA1509_16808, RNA1509_31626, RNA815_17818.1}
4. MligTC455_11508 1604 33.41 Mlig455_027154

Neo: -

Age: Down-Down-Up

Region-enriched R5: 1.433/0.00000

 1.666 - 0.705 - - 0.961 - Mlig455_027154 {REF} {Length: 633} {TRANSSPLICED} {RNA1509_27290} {RNA1310_22802} {RNA815_17747.1}
5. MligTC455_42197 327 6.8 Mlig455_049872

Neo: Irradiation

Age: -

Region-enriched R5: 2.917/0.00005

 0.958 - - - - 0.958 - Mlig455_049872 {REF} {Length: 3454} {RNA1509_33212} {RNA1310_9077.1} {RNA815_11156}
6. MligTC455_43955 936 19.51 Mlig455_004401

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.301

Region-enriched R5: 1.996/0.00001

 OXA1L 0.956 - - - - 0.956 - Mlig455_004401 {REF} {Length: 1411} {TRANSSPLICED} {Pfam: 60Kd inner membrane protein [PF02096.22, score=47.5]} {Human: ENSG00000155463, OXA1L, OXA1L, mitochondrial inner membrane protein, [RH, Score=140, Expect=9e-37]} {Mouse: ENSMUSG00000000959, Oxa1l, oxidase assembly 1-like, [RH, Score=146, Expect=2e-39]} {Dmel: FBgn0027615, CG6404, [RH, Score=140, Expect=2e-37]} {Celegans: WBGene00007215, oxa-1, OXA mitochondrial inner membrane insertase homolog, [RH, Score=100, Expect=3e-23]} {Smed: dd_Smed_v6_6233_1_2, dd_Smed_v6_6233_1_2, [RH, Score=101, Expect=8e-24]} {RNA1509_10268, RNA1509_34542} {RNA1310_18722.1, RNA1509_10268, RNA1509_34542} {RNA1509_10268, RNA1509_34542, RNA815_10959}
7. MligTC455_02592 360 7.51 Mlig455_012040, Mlig455_067503

Neo: -

Age: Up-Up-Down

 MX2 0.953 - - - - 0.953 -

Mlig455_012040 {REF} {Length: 1839} {RNA1310_58944}

Mlig455_067503 {REF} {Length: 4597} {Pfam: Dynamin central region [PF01031.22, score=151.5]; Dynamin family [PF00350.25, score=125.5]; Dynamin GTPase effector domain [PF02212.20, score=54.1]; 50S ribosome-binding GTPase [PF01926.25, score=24.4]; AAA ATPase domain [PF13175.8, score=21.6]; Family with sequence similarity 184, A and B [PF15665.7, score=19.1]} {Human: ENSG00000183486, MX2, MX dynamin like GTPase 2, [RH, Score=349, Expect=3e-110]; ENSG00000157601, MX1, MX dynamin like GTPase 1, [RH, Score=336, Expect=1e-105]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [RH, Score=342, Expect=2e-108]} {Dmel: FBgn0003392, shi, shibire, [Score=152, Expect=3e-38]} {Celegans: WBGene00001130, dyn-1, Dynamin, [Score=164, Expect=3e-42]} {Smed: dd_Smed_v6_1818_0_1, dd_Smed_v6_1818_0_1, [Score=162, Expect=2e-42]} {RNA1509_19894} {RNA1310_1482.2} {RNA815_3194}
8. MligTC455_46238 222 4.62 Mlig455_040297

Neo: -

Age: -

 DNM1L 0.952 - - - - 0.952 - Mlig455_040297 {REF} {Length: 2254} {Pfam: Dynamin central region [PF01031.22, score=329.6]; Dynamin family [PF00350.25, score=174.2]; Dynamin GTPase effector domain [PF02212.20, score=107.0]} {Human: ENSG00000087470, DNM1L, dynamin 1 like, [Score=873, Expect=0.0]} {Mouse: ENSMUSG00000022789, Dnm1l, dynamin 1-like, [Score=867, Expect=0.0]} {Dmel: FBgn0026479, Drp1, Dynamin related protein 1, [Score=853, Expect=0.0]} {Celegans: WBGene00001093, drp-1, Dynamin-Related Protein; Dynamin-related protein, [Score=789, Expect=0.0]} {Smed: dd_Smed_v6_1818_0_1, dd_Smed_v6_1818_0_1, [Score=654, Expect=0.0]} {RNA1509_49692} {RNA1310_7022} {RNA815_5974}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA