M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45254

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45254 3 0.07 Mlig455_069862

Neo: -

Age: Down-Up-Down

 TTC28 Mlig455_069862 {REF} {Length: 4730} {Pfam: Tetratricopeptide repeat [PF13424.8, score=128.0]; Tetratricopeptide repeat [PF13176.8, score=112.4]; Tetratricopeptide repeat [PF00515.30, score=86.2]; Tetratricopeptide repeat [PF07719.19, score=73.6]; Tetratricopeptide repeat [PF13181.8, score=55.9]; MalT-like TPR region [PF17874.3, score=34.2]; Tetratricopeptide repeat [PF13374.8, score=30.4]; Tetratricopeptide repeat [PF13174.8, score=24.3]} {Human: ENSG00000100154, TTC28, tetratricopeptide repeat domain 28, [Score=444, Expect=2e-134]} {Mouse: ENSMUSG00000033209, Ttc28, tetratricopeptide repeat domain 28, [Score=438, Expect=1e-132]} {Dmel: FBgn0262719, CG43163, [Score=308, Expect=1e-88]} {Smed: dd_Smed_v6_6548_1_1, dd_Smed_v6_6548_1_1, [Score=71.6, Expect=9e-13]} {RNA1509_58141} {RNA1310_1046.3} {RNA815_5140}

Cumulative graph for MligTC455_45254

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_45254

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45254 3 0.07 Mlig455_069862

Neo: -

Age: Down-Up-Down

 TTC28 1 - - - - 1.000 - Mlig455_069862 {REF} {Length: 4730} {Pfam: Tetratricopeptide repeat [PF13424.8, score=128.0]; Tetratricopeptide repeat [PF13176.8, score=112.4]; Tetratricopeptide repeat [PF00515.30, score=86.2]; Tetratricopeptide repeat [PF07719.19, score=73.6]; Tetratricopeptide repeat [PF13181.8, score=55.9]; MalT-like TPR region [PF17874.3, score=34.2]; Tetratricopeptide repeat [PF13374.8, score=30.4]; Tetratricopeptide repeat [PF13174.8, score=24.3]} {Human: ENSG00000100154, TTC28, tetratricopeptide repeat domain 28, [Score=444, Expect=2e-134]} {Mouse: ENSMUSG00000033209, Ttc28, tetratricopeptide repeat domain 28, [Score=438, Expect=1e-132]} {Dmel: FBgn0262719, CG43163, [Score=308, Expect=1e-88]} {Smed: dd_Smed_v6_6548_1_1, dd_Smed_v6_6548_1_1, [Score=71.6, Expect=9e-13]} {RNA1509_58141} {RNA1310_1046.3} {RNA815_5140}
2. MligTC455_45872 41 0.84 Mlig455_044122

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_044122 {REF} {Length: 624} {NoTransDecoderORF}
3. MligTC455_09201 3 0.05 Mlig455_053516

Neo: -

Age: -

 0.998 - - - - 0.998 - Mlig455_053516 {REF} {Length: 1488} {Pfam: Integrase zinc binding domain [PF17921.3, score=65.2]; Integrase core domain [PF00665.28, score=41.1]; H2C2 zinc finger [PF09337.12, score=23.7]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=141, Expect=8e-38]} {RNA1310_64177} {RNA815_44272}
4. MligTC455_23706 9 0.19 Mlig455_012343

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_012343 {REF} {Length: 2481} {RNA1509_7454}
5. MligTC455_13600 3 0.06 Mlig455_057327

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_057327 {REF} {Length: 625} {NoTransDecoderORF} {RNA1509_39201} {RNA1310_83822}
6. MligTC455_56067 3 0.07 Mlig455_040324

Neo: -

Age: -

 0.985 - - - - 0.985 - Mlig455_040324 {REF} {Length: 282} {NoTransDecoderORF} {RNA1310_65693} {RNA815_1829.1}
7. MligTC455_34045 50 1.03 Mlig455_000064

Neo: -

Age: Up-Down-Down

 EIF4G3 0.984 - - - - 0.984 - Mlig455_000064 {REF} {Length: 2033} {Human: ENSG00000075151, EIF4G3, eukaryotic translation initiation factor 4 gamma 3, [Score=50.8, Expect=3e-07]} {Mouse: ENSMUSG00000028760, Eif4g3, eukaryotic translation initiation factor 4 gamma, 3, [Score=52.0, Expect=1e-07]} {RNA1509_47493} {RNA1310_2285} {RNA815_8691.1}
8. MligTC455_27381 18 0.38 Mlig455_005326, Mlig455_056074, Mlig455_071072

Neo: -

Age: -

 0.979 - - - - 0.979 -

Mlig455_005326 {REF} {Length: 1415} {TRANSSPLICED} {RNA1509_24579} {RNA1310_5913.1} {RNA815_3696}

Mlig455_056074 {REF} {Length: 2219} {TRANSSPLICED} {RNA1509_24579} {RNA1310_5913.1} {RNA815_3696}

Mlig455_071072 {REF} {Length: 2219} {TRANSSPLICED} {RNA1509_24579} {RNA1310_5913.1} {RNA815_3696}
9. MligTC455_01770 3 0.05 Mlig455_066385

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_066385 {REF} {Length: 1023} {NoTransDecoderORF} {RNA1509_22897} {RNA1310_82029}
10. MligTC455_01053 33 0.69 Mlig455_008206

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_008206 {REF} {Length: 1189} {Pfam: F5/8 type C domain [PF00754.27, score=27.4]} {Smed: dd_Smed_v6_46759_0_1, dd_Smed_v6_46759_0_1, [Score=44.7, Expect=7e-06]} {RNA1310_28170} {RNA815_37289}
11. MligTC455_14133 34 0.7 Mlig455_049257

Neo: Irradiation

Age: -

Region-enriched R6: 7.088/0.00083
Region-enriched R5: 6.140/0.00035

 GLS 0.973 - - - - 0.973 - Mlig455_049257 {REF} {Length: 2534} {Pfam: Glutaminase [PF04960.17, score=249.2]; Ankyrin repeats (3 copies) [PF12796.9, score=32.6]; Ankyrin repeats (many copies) [PF13637.8, score=31.0]; Ankyrin repeats (many copies) [PF13857.8, score=28.8]; EF-hand domain [PF17959.3, score=22.7]} {Human: ENSG00000115419, GLS, glutaminase, [Score=374, Expect=2e-120]; ENSG00000135423, GLS2, glutaminase 2, [Score=360, Expect=5e-116]} {Mouse: ENSMUSG00000026103, Gls, glutaminase, [Score=372, Expect=7e-120]; ENSMUSG00000044005, Gls2, glutaminase 2 (liver, mitochondrial), [Score=368, Expect=4e-119]} {Dmel: FBgn0261625, GLS, Glutaminase, [Score=379, Expect=8e-123]} {Celegans: WBGene00007480, glna-1, GLutamiNAse, [Score=383, Expect=6e-123]} {Smed: dd_Smed_v6_15097_0_1, dd_Smed_v6_15097_0_1, [Score=298, Expect=1e-94]} {RNA1509_45807} {RNA1310_38679, RNA1509_45807}
12. MligTC455_21708 36 0.75 Mlig455_015590, Mlig455_055834

Neo: -

Age: -

Region-enriched R4: 4.065/0.02304

 0.972 - - - - 0.972 -

Mlig455_015590 {REF} {Length: 587} {RNA1310_60669}

Mlig455_055834 {REF} {Length: 2893} {RNA1509_25664} {RNA1310_27489.1} {RNA815_31395}
13. MligTC455_21007 9 0.2 Mlig455_066576

Neo: Irradiation

Age: -

 0.97 - - - - 0.970 - Mlig455_066576 {REF} {Length: 1609} {TRANSSPLICED} {Dmel: FBgn0038984, AdipoR, Adiponectin receptor, [Score=40.8, Expect=8e-06]} {Celegans: WBGene00021313, paqr-2, Progestin and AdipoQ Receptor family, [Score=43.9, Expect=6e-07]} {Smed: dd_Smed_v6_5202_0_1, dd_Smed_v6_5202_0_1, [Score=47.0, Expect=3e-08]} {RNA1509_2245} {RNA1310_4378} {RNA815_7009}
14. MligTC455_54215 122 2.55 Mlig455_018502

Neo: -

Age: -

 UGDH 0.969 - - - - 0.969 - Mlig455_018502 {REF} {Length: 2291} {TRANSSPLICED} {Pfam: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain [PF03721.16, score=189.4]; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain [PF03720.17, score=122.8]; UDP-glucose/GDP-mannose dehydrogenase family, central domain [PF00984.21, score=99.1]; Sec20 [PF03908.15, score=73.5]} {Human: ENSG00000109814, UGDH, UDP-glucose 6-dehydrogenase, [RH, Score=586, Expect=0.0]} {Mouse: ENSMUSG00000029201, Ugdh, UDP-glucose dehydrogenase, [RH, Score=582, Expect=0.0]} {Dmel: FBgn0261445, sgl, sugarless, [RH, Score=601, Expect=0.0]} {Celegans: WBGene00005022, sqv-4, UDP-glucose 6-dehydrogenase, [RH, Score=559, Expect=0.0]} {Smed: dd_Smed_v6_10849_0_1, dd_Smed_v6_10849_0_1, [RH, Score=526, Expect=0.0]} {RNA1509_48435} {RNA1310_17256.1} {RNA815_6865}
15. MligTC455_14567 31 0.65 Mlig455_042354, Mlig455_047125

Neo: -

Age: -

 0.968 - - - - 0.968 -

Mlig455_042354 {REF} {Length: 1540} {Pfam: PAN domain [PF00024.28, score=22.5]}

Mlig455_047125 {REF} {Length: 1302} {Pfam: PAN domain [PF00024.28, score=21.8]}
16. MligTC455_11603 6 0.12 Mlig455_046639

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_046639 {REF} {Length: 395} {NoTransDecoderORF} {RNA1509_56382} {RNA1310_86332} {RNA815_16344.2}
17. MligTC455_00429 8 0.17 Mlig455_057139

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_057139 {REF} {Length: 528} {NoTransDecoderORF}
18. MligTC455_41909 3 0.07 Mlig455_032661

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_032661 {REF} {Length: 1046} {RNA1310_74699} {RNA815_34259}
19. MligTC455_12237 17 0.35 Mlig455_003548

Neo: Irradiation

Age: Down-Down-Down, logFC(26M/2M)=-0.612

 PDP2 0.963 - - - - 0.963 - Mlig455_003548 {REF} {Length: 2902} {Pfam: Protein phosphatase 2C [PF00481.23, score=58.2]} {Human: ENSG00000172840, PDP2, pyruvate dehyrogenase phosphatase catalytic subunit 2, [Score=100, Expect=8e-22]; ENSG00000164951, PDP1, pyruvate dehyrogenase phosphatase catalytic subunit 1, [Score=97.4, Expect=8e-21]} {Mouse: ENSMUSG00000049225, Pdp1, pyruvate dehyrogenase phosphatase catalytic subunit 1, [Score=97.4, Expect=5e-21]} {Dmel: FBgn0029958, Pdp, Pyruvate dehydrogenase phosphatase, [Score=109, Expect=3e-25]} {Celegans: WBGene00022832, pdp-1, Pyruvate Dehydrogenase Phosphatase homolog, [Score=95.5, Expect=7e-21]} {Smed: dd_Smed_v6_4201_0_1, dd_Smed_v6_4201_0_1, [Score=120, Expect=1e-30]} {RNA1509_48674} {RNA1310_14443} {RNA815_18993}
20. MligTC455_11332 54 1.12 Mlig455_030269

Neo: Irradiation

Age: logFC(26M/2M)=0.396

Region-enriched R2: 7.723/0.02062
Region-enriched R5: 4.672/0.01786

 0.96 - - - - 0.960 - Mlig455_030269 {REF} {Length: 4073} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=22.9]} {RNA1509_30357} {RNA1310_40025} {RNA815_26955}
21. MligTC455_00754 12 0.24 Mlig455_041596

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_041596 {REF} {Length: 799} {NoTransDecoderORF} {RNA1310_118711} {RNA815_36588}
22. MligTC455_13469 72 1.49 Mlig455_053617

Neo: Irradiation

Age: Up-Down-Down

 0.954 - - - - 0.954 - Mlig455_053617 {REF} {Length: 2463} {tRNA: Thr(CGT),pseudo, score=28.2} {Pfam: F-box domain [PF00646.35, score=33.5]; F-box-like [PF12937.9, score=26.8]} {RNA1509_46688} {RNA1310_36647.1} {RNA815_23340}
23. MligTC455_17833 774 16.13 Mlig455_030235, Mlig455_068013

Neo: Irradiation

Age: logFC(26M/2M)=0.363

Region-enriched R2: 4.738/0.01809
Region-enriched R5: 4.121/0.00020

 SLC47A1 0.954 - - - - 0.954 -

Mlig455_030235 {REF} {Length: 3827} {Pfam: MatE [PF01554.20, score=108.9]} {Human: ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [Score=172, Expect=2e-46]; ENSG00000180638, SLC47A2, solute carrier family 47 member 2, [Score=172, Expect=2e-46]} {Mouse: ENSMUSG00000069855, Slc47a2, solute carrier family 47, member 2, [Score=185, Expect=4e-51]} {Smed: dd_Smed_v6_10595_0_1, dd_Smed_v6_10595_0_1, [Score=174, Expect=2e-47]} {RNA1509_24358, RNA1509_27371, RNA1509_60151, RNA1509_7558} {RNA1310_12251, RNA1509_24358, RNA1509_27371, RNA1509_60151, RNA1509_7558} {RNA1509_24358, RNA1509_27371, RNA1509_60151, RNA1509_7558, RNA815_8297}

Mlig455_068013 {REF} {Length: 4825} {Pfam: MatE [PF01554.20, score=116.9]} {Human: ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [Score=155, Expect=1e-41]; ENSG00000180638, SLC47A2, solute carrier family 47 member 2, [Score=148, Expect=7e-39]} {Mouse: ENSMUSG00000069855, Slc47a2, solute carrier family 47, member 2, [Score=163, Expect=3e-45]} {Smed: dd_Smed_v6_11376_0_1, dd_Smed_v6_11376_0_1, [Score=149, Expect=1e-39]} {RNA1509_54056, RNA1509_55833, RNA1509_7558} {RNA1310_12251, RNA1509_54056, RNA1509_55833} {RNA1509_54056, RNA1509_55833, RNA815_8297}
24. MligTC455_25514 28 0.58 Mlig455_032472

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_032472 {REF} {Length: 4046} {TRANSSPLICED} {Pfam: DnaJ domain [PF00226.33, score=36.8]} {RNA1509_22296} {RNA1310_3971} {RNA815_1656}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA