M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45530

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45530 2268 47.25 Mlig455_062118, Mlig455_069662

Neo: Neoblast

Age: -

Regeneration-upregulated BL: 1.396

Regeneration-enriched BL: 1.396

Mlig455_062118 {REF} {Length: 1689} {TRANSSPLICED} {RNA1509_6927} {RNA1310_17002.1} {RNA815_7010}

Mlig455_069662 {REF} {Length: 1690} {TRANSSPLICED} {RNA1509_23385, RNA1509_39813, RNA1509_6927} {RNA1310_17002.1, RNA1509_23385, RNA1509_39813, RNA1509_6927} {RNA1509_23385, RNA1509_39813, RNA1509_6927, RNA815_7010}

Cumulative graph for MligTC455_45530

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.966 5.795 0.19916 0.83517
RegionR2 0.191 5.795 0.54510 0.91175
RegionR3 0.456 5.795 0.06519 0.45066
RegionR4 0.355 5.795 0.22477 0.51600
RegionR5 0.71 5.795 0.00143 0.01355
RegionR6 0.408 5.795 0.10639 0.59748
RegionR7 -0.334 5.795 0.33918 0.97582
RegionR8 -0.82 5.795 0.07672 0.52804

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.904 5.795 0.35877 1.00000
RegenerationR2 0.309 5.795 0.23520 0.68270
RegenerationR3 0.399 5.795 0.15556 0.58643
RegenerationR4 0.557 5.795 0.05361 0.37223
RegenerationR5 0.268 5.795 0.29874 0.72598
RegenerationR6 0.791 5.795 0.00378 0.07307
RegenerationBL 1.396 5.795 0.00001 0.00049 Specific for BL: 1.396
RegenerationTP 1.156 5.795 0.00185 0.06886


Genes with expression patterns similar to MligTC455_45530

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45530 2268 47.25 Mlig455_062118, Mlig455_069662

Neo: Neoblast

Age: -

Regeneration-upregulated BL: 1.396

Regeneration-enriched BL: 1.396

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_062118 {REF} {Length: 1689} {TRANSSPLICED} {RNA1509_6927} {RNA1310_17002.1} {RNA815_7010}

Mlig455_069662 {REF} {Length: 1690} {TRANSSPLICED} {RNA1509_23385, RNA1509_39813, RNA1509_6927} {RNA1310_17002.1, RNA1509_23385, RNA1509_39813, RNA1509_6927} {RNA1509_23385, RNA1509_39813, RNA1509_6927, RNA815_7010}
2. MligTC455_46159 1471 30.64 Mlig455_047468

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.700

Region-enriched R4: 1.770/0.00003

 EHD1 1.85 - - - 0.891 - 0.959 Mlig455_047468 {REF} {Length: 3382} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF5600) [PF18150.3, score=143.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=62.1]; N-terminal EH-domain containing protein [PF16880.7, score=58.8]; Dynamin family [PF00350.25, score=54.3]; 50S ribosome-binding GTPase [PF01926.25, score=34.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.5]; EF hand [PF00036.34, score=20.0]} {Human: ENSG00000110047, EHD1, EH domain containing 1, [RH, Score=709, Expect=0.0]; ENSG00000013016, EHD3, EH domain containing 3, [RH, Score=704, Expect=0.0]; ENSG00000103966, EHD4, EH domain containing 4, [RH, Score=693, Expect=0.0]} {Mouse: ENSMUSG00000024772, Ehd1, EH-domain containing 1, [RH, Score=711, Expect=0.0]; ENSMUSG00000107039, Ehd1, EH-domain containing 1, [RH, Score=711, Expect=0.0]; ENSMUSG00000024065, Ehd3, EH-domain containing 3, [RH, Score=698, Expect=0.0]; ENSMUSG00000027293, Ehd4, EH-domain containing 4, [RH, Score=690, Expect=0.0]} {Dmel: FBgn0016693, Past1, Putative Achaete Scute Target 1, [RH, Score=736, Expect=0.0]} {Celegans: WBGene00004373, rme-1, Receptor Mediated Endocytosis; Receptor-mediated endocytosis 1 isoform I, [RH, Score=729, Expect=0.0]} {Smed: dd_Smed_v6_3148_0_1, dd_Smed_v6_3148_0_1, [RH, Score=741, Expect=0.0]} {RNA1509_2034} {RNA1310_6511.3} {RNA815_5849.2}
3. MligTC455_29588 5927 123.49 Mlig455_063543

Neo: Int S/G2/M

Age: -

 PSMD11 1.791 - - - 0.959 - 0.832 Mlig455_063543 {REF} {Length: 1579} {TRANSSPLICED} {Pfam: 26S proteasome regulatory subunit RPN6 N-terminal domain [PF18055.3, score=99.0]; PCI domain [PF01399.29, score=58.2]; 26S proteasome subunit RPN6 C-terminal helix domain [PF18503.3, score=23.1]} {Human: ENSG00000108671, PSMD11, proteasome 26S subunit, non-ATPase 11, [RH, Score=452, Expect=6e-158]} {Mouse: ENSMUSG00000017428, Psmd11, proteasome (prosome, macropain) 26S subunit, non-ATPase, 11, [RH, Score=452, Expect=3e-158]} {Dmel: FBgn0028689, Rpn6, Regulatory particle non-ATPase 6, [RH, Score=459, Expect=2e-160]} {Celegans: WBGene00004462, rpn-6.1, Probable 26S proteasome regulatory subunit rpn-6.1, [RH, Score=373, Expect=5e-127]} {Smed: dd_Smed_v6_2135_0_1, dd_Smed_v6_2135_0_1, [RH, Score=457, Expect=1e-160]} {RNA1509_1064} {RNA1310_18382.1, RNA1509_1064} {RNA1509_1064, RNA815_8342}
4. MligTC455_45280 7348 153.08 Mlig455_042762

Neo: -

Age: -

Region-enriched R5: 1.275/0.00000

 EIF3M 1.694 0.741 - - - - 0.953 Mlig455_042762 {REF} {Length: 1378} {TRANSSPLICED} {Pfam: PCI domain [PF01399.29, score=43.7]; eIF3 subunit M, C-terminal helix [PF18005.3, score=34.3]} {Human: ENSG00000149100, EIF3M, eukaryotic translation initiation factor 3 subunit M, [RH, Score=264, Expect=2e-84]} {Mouse: ENSMUSG00000027170, Eif3m, eukaryotic translation initiation factor 3, subunit M, [RH, Score=264, Expect=1e-84]} {Dmel: FBgn0033902, eIF3m, eukaryotic translation initiation factor 3 subunit m, [RH, Score=211, Expect=2e-64]} {Celegans: WBGene00019543, cif-1, COP9/Signalosome and eIF3 complex-shared subunit 1, [RH, Score=131, Expect=4e-34]} {Smed: dd_Smed_v6_2680_0_1, dd_Smed_v6_2680_0_1, [RH, Score=205, Expect=4e-62]} {RNA1509_1366} {RNA1310_17297.1} {RNA815_8400}
5. MligTC455_45279 7367 153.48 Mlig455_039067

Neo: -

Age: -

Region-enriched R5: 1.276/0.00000

 EIF3M 1.692 0.741 - - - - 0.951 Mlig455_039067 {REF} {Length: 1937} {Pfam: PCI domain [PF01399.29, score=43.8]; eIF3 subunit M, C-terminal helix [PF18005.3, score=34.3]} {Human: ENSG00000149100, EIF3M, eukaryotic translation initiation factor 3 subunit M, [RH, Score=263, Expect=3e-84]} {Mouse: ENSMUSG00000027170, Eif3m, eukaryotic translation initiation factor 3, subunit M, [RH, Score=264, Expect=2e-84]} {Dmel: FBgn0033902, eIF3m, eukaryotic translation initiation factor 3 subunit m, [RH, Score=211, Expect=4e-64]} {Celegans: WBGene00019543, cif-1, COP9/Signalosome and eIF3 complex-shared subunit 1, [RH, Score=130, Expect=5e-34]} {Smed: dd_Smed_v6_2680_0_1, dd_Smed_v6_2680_0_1, [RH, Score=204, Expect=9e-62]} {RNA1509_1366} {RNA1310_21426} {RNA815_8400}
6. MligTC455_53938 904 18.84 Mlig455_016214

Neo: -

Age: logFC(26M/2M)=-0.327

 TMEM208 0.955 - - - - - 0.955 Mlig455_016214 {REF} {Length: 3600} {TRANSSPLICED} {Pfam: SRP-independent targeting protein 2/TMEM208 [PF05620.13, score=142.0]} {Human: ENSG00000168701, TMEM208, transmembrane protein 208, [RH, Score=138, Expect=4e-37]} {Mouse: ENSMUSG00000014856, Tmem208, transmembrane protein 208, [RH, Score=141, Expect=2e-38]} {Dmel: FBgn0034059, CG8320, [RH, Score=120, Expect=5e-31]} {Celegans: WBGene00011033, R05D11.5, [RH, Score=70.9, Expect=5e-14]} {Smed: dd_Smed_v6_12915_0_1, dd_Smed_v6_12915_0_1, [RH, Score=127, Expect=2e-33]} {RNA1509_15787} {RNA1310_11648} {RNA815_13651}
7. MligTC455_53939 898 18.7 Mlig455_054270

Neo: -

Age: -

 TMEM208 0.954 - - - - - 0.954 Mlig455_054270 {REF} {Length: 1708} {TRANSSPLICED} {Pfam: SRP-independent targeting protein 2/TMEM208 [PF05620.13, score=142.0]} {Human: ENSG00000168701, TMEM208, transmembrane protein 208, [RH, Score=138, Expect=4e-37]} {Mouse: ENSMUSG00000014856, Tmem208, transmembrane protein 208, [RH, Score=141, Expect=2e-38]} {Dmel: FBgn0034059, CG8320, [RH, Score=120, Expect=5e-31]} {Celegans: WBGene00011033, R05D11.5, [RH, Score=70.9, Expect=5e-14]} {Smed: dd_Smed_v6_12915_0_1, dd_Smed_v6_12915_0_1, [RH, Score=127, Expect=2e-33]} {RNA1509_21477, RNA1509_29611} {RNA1310_45280, RNA1509_21477} {RNA1509_21477, RNA815_13651}
8. MligTC455_40606 1364 28.42 Mlig455_059325, Mlig455_065177

Neo: -

Age: -

 HSPBP1 0.953 - - - - - 0.953

Mlig455_059325 {REF} {Length: 2688} {Human: ENSG00000133265, HSPBP1, HSPA (Hsp70) binding protein 1, [RH, Score=55.1, Expect=8e-08]} {Mouse: ENSMUSG00000063802, Hspbp1, HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1, [RH, Score=70.1, Expect=5e-13]} {Dmel: FBgn0036306, CG10973, [RH, Score=72.8, Expect=3e-14]} {Smed: dd_Smed_v6_3729_0_1, dd_Smed_v6_3729_0_1, [RH, Score=84.3, Expect=2e-18]} {RNA1509_36487, RNA1509_43935} {RNA1310_13369.1, RNA1509_36487, RNA1509_43935} {RNA1509_36487, RNA1509_43935, RNA815_12946.1}

Mlig455_065177 {REF} {Length: 2154} {Human: ENSG00000133265, HSPBP1, HSPA (Hsp70) binding protein 1, [RH, Score=55.8, Expect=4e-08]} {Mouse: ENSMUSG00000063802, Hspbp1, HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1, [RH, Score=70.9, Expect=4e-13]} {Dmel: FBgn0036306, CG10973, [RH, Score=72.8, Expect=4e-14]} {Smed: dd_Smed_v6_3729_0_1, dd_Smed_v6_3729_0_1, [RH, Score=84.7, Expect=2e-18]} {RNA1509_43935} {RNA1310_13369.1} {RNA815_12946.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA