TomoSeq data search

Data search

Results for MligTC455_45847

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_45847

213

4.43

Mlig455_041542, Mlig455_053102

Neo: -

Age: Up-Up-Down

PTPN4

Mlig455_041542 {REF} {Length: 5398} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=227.5]; PDZ domain [PF00595.26, score=64.3]; FERM C-terminal PH-like domain [PF09380.12, score=59.4]; FERM central domain [PF00373.20, score=59.2]; FERM N-terminal domain [PF09379.12, score=57.7]; Tyrosine phosphatase family [PF13350.8, score=24.0]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=22.3]; PDZ domain [PF17820.3, score=21.7]} {Human: ENSG00000088179, PTPN4, protein tyrosine phosphatase, non-receptor type 4, [RH, Score=429, Expect=2e-134]} {Mouse: ENSMUSG00000026384, Ptpn4, protein tyrosine phosphatase, non-receptor type 4, [RH, Score=427, Expect=7e-134]} {Dmel: FBgn0261985, Ptpmeg, Protein tyrosine phosphatase Meg, [Score=275, Expect=1e-77]} {Celegans: WBGene00004213, ptp-1, Tyrosine-protein phosphatase 1, [RH, Score=393, Expect=3e-120]} {Smed: dd_Smed_v6_9236_0_1, dd_Smed_v6_9236_0_1, [Score=362, Expect=6e-109]} {RNA1509_24830} {RNA1310_4481.1} {RNA815_5036}

Mlig455_053102 {REF} {Length: 1340} {TRANSSPLICED} {Pfam: FERM N-terminal domain [PF09379.12, score=59.6]; FERM central domain [PF00373.20, score=35.0]} {Human: ENSG00000088179, PTPN4, protein tyrosine phosphatase, non-receptor type 4, [Score=123, Expect=1e-29]} {Mouse: ENSMUSG00000026384, Ptpn4, protein tyrosine phosphatase, non-receptor type 4, [Score=122, Expect=1e-29]} {Dmel: FBgn0085376, CG34347, [Score=121, Expect=3e-29]} {Celegans: WBGene00004213, ptp-1, Tyrosine-protein phosphatase 1, [Score=114, Expect=4e-27]} {Smed: dd_Smed_v6_9236_0_1, dd_Smed_v6_9236_0_1, [Score=113, Expect=5e-27]} {RNA1509_53061} {RNA1310_4481.1} {RNA815_25.1}

Cumulative graph for MligTC455_45847

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.805	2.763	0.18023	0.80907
RegionR2	1.506	2.763	0.12871	0.44512
RegionR3	0.236	2.763	0.75521	1.00000
RegionR4	0.395	2.763	0.67332	0.96927
RegionR5	1.784	2.763	0.01038	0.05930
RegionR6	1.796	2.763	0.02200	0.26851
RegionR7	1.372	2.763	0.20232	0.81071
RegionR8	-1.284	2.763	0.99448	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	6.144	2.763	0.19803	0.93789
RegenerationR2	0.151	2.763	0.77218	0.98097
RegenerationR3	0.898	2.763	0.16547	0.59968
RegenerationR4	0.538	2.763	0.39143	0.80812
RegenerationR5	0.232	2.763	0.63599	0.92500
RegenerationR6	-0.347	2.763	0.55291	0.84079
RegenerationBL	0.243	2.763	0.79568	1.00000
RegenerationTP	0.285	2.763	0.81338	1.00000

Genes with expression patterns similar to MligTC455_45847

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_45847	213	4.43	Mlig455_041542, Mlig455_053102	Neo: - Age: Up-Up-Down	PTPN4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_041542 {REF} {Length: 5398} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=227.5]; PDZ domain [PF00595.26, score=64.3]; FERM C-terminal PH-like domain [PF09380.12, score=59.4]; FERM central domain [PF00373.20, score=59.2]; FERM N-terminal domain [PF09379.12, score=57.7]; Tyrosine phosphatase family [PF13350.8, score=24.0]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=22.3]; PDZ domain [PF17820.3, score=21.7]} {Human: ENSG00000088179, PTPN4, protein tyrosine phosphatase, non-receptor type 4, [RH, Score=429, Expect=2e-134]} {Mouse: ENSMUSG00000026384, Ptpn4, protein tyrosine phosphatase, non-receptor type 4, [RH, Score=427, Expect=7e-134]} {Dmel: FBgn0261985, Ptpmeg, Protein tyrosine phosphatase Meg, [Score=275, Expect=1e-77]} {Celegans: WBGene00004213, ptp-1, Tyrosine-protein phosphatase 1, [RH, Score=393, Expect=3e-120]} {Smed: dd_Smed_v6_9236_0_1, dd_Smed_v6_9236_0_1, [Score=362, Expect=6e-109]} {RNA1509_24830} {RNA1310_4481.1} {RNA815_5036} Mlig455_053102 {REF} {Length: 1340} {TRANSSPLICED} {Pfam: FERM N-terminal domain [PF09379.12, score=59.6]; FERM central domain [PF00373.20, score=35.0]} {Human: ENSG00000088179, PTPN4, protein tyrosine phosphatase, non-receptor type 4, [Score=123, Expect=1e-29]} {Mouse: ENSMUSG00000026384, Ptpn4, protein tyrosine phosphatase, non-receptor type 4, [Score=122, Expect=1e-29]} {Dmel: FBgn0085376, CG34347, [Score=121, Expect=3e-29]} {Celegans: WBGene00004213, ptp-1, Tyrosine-protein phosphatase 1, [Score=114, Expect=4e-27]} {Smed: dd_Smed_v6_9236_0_1, dd_Smed_v6_9236_0_1, [Score=113, Expect=5e-27]} {RNA1509_53061} {RNA1310_4481.1} {RNA815_25.1}
2.	MligTC455_34352	325	6.77	Mlig455_064843	Neo: Germline Age: -		2.702	-	-	0.976	0.809	-	0.917	Mlig455_064843 {REF} {Length: 4089} {TRANSSPLICED} {RNA1509_38722, RNA1509_9708} {RNA1310_5305, RNA1509_38722, RNA1509_9708} {RNA1509_38722, RNA1509_9708, RNA815_5086}
3.	MligTC455_45406	241	5.02	Mlig455_036892	Neo: Irradiation Age: - Region-enriched R5: 1.763/0.00269	RGS12	1.826	-	-	0.976	-	-	0.850	Mlig455_036892 {REF} {Length: 4574} {TRANSSPLICED} {Pfam: Regulator of G protein signaling domain [PF00615.21, score=105.6]; PDZ domain [PF00595.26, score=50.1]; GoLoco motif [PF02188.19, score=32.6]; PDZ domain [PF17820.3, score=31.9]} {Human: ENSG00000159788, RGS12, regulator of G protein signaling 12, [Score=126, Expect=5e-29]} {Mouse: ENSMUSG00000029101, Rgs12, regulator of G-protein signaling 12, [Score=138, Expect=5e-33]} {Dmel: FBgn0020278, loco, locomotion defects, [RH, Score=107, Expect=5e-23]} {Celegans: WBGene00001145, eat-16, [Score=101, Expect=3e-22]} {Smed: dd_Smed_v6_8648_0_1, dd_Smed_v6_8648_0_1, [Score=110, Expect=1e-24]} {RNA1509_17157} {RNA1310_2366.1, RNA1509_17157} {RNA1509_17157, RNA815_6783.1}
4.	MligTC455_50650	168	3.51	Mlig455_017792	Neo: - Age: logFC(26M/2M)=-0.322		1.682	-	-	0.950	-	-	0.732	Mlig455_017792 {REF} {Length: 3944} {Pfam: Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=19.8]} {Smed: dd_Smed_v6_11519_0_1, dd_Smed_v6_11519_0_1, [Score=328, Expect=2e-96]} {RNA1509_31680} {RNA1310_4085.1, RNA1509_31680} {RNA1509_31680, RNA815_1170.1}
5.	MligTC455_46464	37	0.77	Mlig455_015896	Neo: - Age: - Region-enriched R5: 3.599/0.02898	ADAT2	0.977	-	-	0.977	-	-	-	Mlig455_015896 {REF} {Length: 1267} {TRANSSPLICED} {Pfam: Cytidine and deoxycytidylate deaminase zinc-binding region [PF00383.25, score=68.1]; MafB19-like deaminase [PF14437.8, score=54.4]} {Human: ENSG00000189007, ADAT2, adenosine deaminase, tRNA specific 2, [RH, Score=144, Expect=3e-43]} {Mouse: ENSMUSG00000019808, Adat2, adenosine deaminase, tRNA-specific 2, [RH, Score=142, Expect=1e-42]} {Dmel: FBgn0038491, CG5292, [RH, Score=106, Expect=2e-29]} {Celegans: WBGene00010436, JC8.4, [RH, Score=131, Expect=5e-39]} {Smed: dd_Smed_v6_7968_0_1, dd_Smed_v6_7968_0_1, [RH, Score=102, Expect=9e-28]} {RNA1509_26097} {RNA1310_6653, RNA1509_26097} {RNA1509_26097, RNA815_12714}
6.	MligTC455_19687	194	4.04	Mlig455_037623	Neo: - Age: -	CCNQ	0.958	-	-	0.958	-	-	-	Mlig455_037623 {REF} {Length: 2275} {TRANSSPLICED} {Human: ENSG00000262919, CCNQ, cyclin Q, [Score=87.4, Expect=9e-21]} {Mouse: ENSMUSG00000049489, Ccnq, cyclin Q, [Score=84.3, Expect=1e-19]} {RNA1509_34677} {RNA1310_40105.1} {RNA815_11835}
7.	MligTC455_39359	856	17.84	Mlig455_043733, Mlig455_043824	Neo: Irradiation Age: -	HEATR1	0.955	-	-	-	-	-	0.955	Mlig455_043733 {REF} {Length: 6084} {TRANSSPLICED} {Pfam: U3 small nucleolar RNA-associated protein 10 [PF12397.10, score=23.7]} {Human: ENSG00000119285, HEATR1, HEAT repeat containing 1, [Score=103, Expect=2e-21]} {Mouse: ENSMUSG00000050244, Heatr1, HEAT repeat containing 1, [RH, Score=90.9, Expect=7e-18]} {RNA1509_12757, RNA1509_2547} {RNA1310_1787.1, RNA1509_12757, RNA1509_2547} {RNA1509_12757, RNA1509_2547, RNA815_4052} Mlig455_043824 {REF} {Length: 6006} {TRANSSPLICED} {Pfam: U3 small nucleolar RNA-associated protein 10 [PF12397.10, score=23.7]} {Human: ENSG00000119285, HEATR1, HEAT repeat containing 1, [Score=104, Expect=1e-21]} {Mouse: ENSMUSG00000050244, Heatr1, HEAT repeat containing 1, [RH, Score=92.8, Expect=2e-18]} {RNA1509_2547} {RNA1310_1787.1} {RNA815_4052}
8.	MligTC455_37515	150	3.12	Mlig455_031636	Neo: - Age: Up-Down-Down	JDP2	0.952	-	-	0.952	-	-	-	Mlig455_031636 {REF} {Length: 1738} {Pfam: bZIP transcription factor [PF00170.23, score=32.0]; Basic region leucine zipper [PF07716.17, score=30.0]; bZIP Maf transcription factor [PF03131.19, score=26.2]} {Human: ENSG00000140044, JDP2, Jun dimerization protein 2, [Score=47.8, Expect=5e-06]; ENSG00000123685, BATF3, basic leucine zipper ATF-like transcription factor 3, [Score=46.2, Expect=7e-06]} {Mouse: ENSMUSG00000040270, Bach2, BTB and CNC homology, basic leucine zipper transcription factor 2, [Score=48.5, Expect=9e-06]; ENSMUSG00000034271, Jdp2, Jun dimerization protein 2, [Score=47.4, Expect=4e-06]; ENSMUSG00000026628, Atf3, activating transcription factor 3, [Score=46.2, Expect=1e-05]} {Dmel: FBgn0001297, kay, kayak, [Score=58.9, Expect=2e-09]}
9.	MligTC455_48926	253	5.27	Mlig455_021971	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.527	GSTZ1	0.952	-	-	-	-	-	0.952	Mlig455_021971 {REF} {Length: 2285} {TRANSSPLICED} {Pfam: Glutathione S-transferase, N-terminal domain [PF13417.8, score=68.3]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=64.0]; Glutathione S-transferase, N-terminal domain [PF13409.8, score=54.8]} {Human: ENSG00000100577, GSTZ1, glutathione S-transferase zeta 1, [RH, Score=231, Expect=7e-77]} {Mouse: ENSMUSG00000021033, Gstz1, glutathione transferase zeta 1 (maleylacetoacetate isomerase), [RH, Score=238, Expect=7e-80]} {Dmel: FBgn0037697, GstZ2, Glutathione S transferase Z2, [RH, Score=230, Expect=1e-76]} {Celegans: WBGene00001790, gst-42, Probable maleylacetoacetate isomerase, [RH, Score=189, Expect=1e-60]} {Smed: dd_Smed_v6_1703_0_1, dd_Smed_v6_1703_0_1, [RH, Score=226, Expect=3e-75]} {RNA1509_16440} {RNA1310_16659.1} {RNA815_19786}

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