M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45869

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45869 133 2.77 Mlig455_060793

Neo: -

Age: -

Regeneration-enriched R3: 6.380
Regeneration-enriched TP: 5.702
Regeneration-enriched R5: 4.648

 CISD3 Mlig455_060793 {REF} {Length: 1718} {TRANSSPLICED} {Pfam: Iron-binding zinc finger CDGSH type [PF09360.12, score=61.3]} {Human: ENSG00000274768, CISD3, CDGSH iron sulfur domain 3, [RH, Score=73.6, Expect=8e-17]; ENSG00000277972, CISD3, CDGSH iron sulfur domain 3, [RH, Score=73.6, Expect=8e-17]} {Mouse: ENSMUSG00000078695, Cisd3, CDGSH iron sulfur domain 3, [RH, Score=77.8, Expect=1e-18]} {Dmel: FBgn0033100, CG3420, [RH, Score=74.3, Expect=3e-17]} {Celegans: WBGene00010909, cisd-3.1, CDGSH Iron Sulfur Domain protein homolog, [RH, Score=74.3, Expect=4e-17]} {Smed: dd_Smed_v6_10541_0_1, dd_Smed_v6_10541_0_1, [RH, Score=120, Expect=2e-35]} {RNA1509_25702} {RNA1310_22872} {RNA815_22621.2}

Cumulative graph for MligTC455_45869

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.806 2.513 0.82153 1.00000
RegionR2 2.411 2.513 0.07115 0.32549
RegionR3 -0.253 2.513 0.71627 1.00000
RegionR4 0.209 2.513 0.89083 1.00000
RegionR5 -0.068 2.513 0.79082 1.00000
RegionR6 -1.824 2.513 0.10523 0.59450
RegionR7 0.361 2.513 0.83848 1.00000
RegionR8 -0.029 2.513 0.86727 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.956 2.513 0.99353 1.00000
RegenerationR2 4.216 2.513 0.00032 0.02396
RegenerationR3 6.38 2.513 0.00000 0.00060
RegenerationR4 3.703 2.513 0.00239 0.06277
RegenerationR5 4.648 2.513 0.00001 0.00352
RegenerationR6 5.938 2.513 0.00601 0.09417
RegenerationBL 5.818 2.513 0.00602 0.07416
RegenerationTP 5.702 2.513 0.00001 0.00240


Genes with expression patterns similar to MligTC455_45869

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45869 133 2.77 Mlig455_060793

Neo: -

Age: -

Regeneration-enriched R3: 6.380
Regeneration-enriched TP: 5.702
Regeneration-enriched R5: 4.648

 CISD3 3 1.000 1.000 - - - 1.000 Mlig455_060793 {REF} {Length: 1718} {TRANSSPLICED} {Pfam: Iron-binding zinc finger CDGSH type [PF09360.12, score=61.3]} {Human: ENSG00000274768, CISD3, CDGSH iron sulfur domain 3, [RH, Score=73.6, Expect=8e-17]; ENSG00000277972, CISD3, CDGSH iron sulfur domain 3, [RH, Score=73.6, Expect=8e-17]} {Mouse: ENSMUSG00000078695, Cisd3, CDGSH iron sulfur domain 3, [RH, Score=77.8, Expect=1e-18]} {Dmel: FBgn0033100, CG3420, [RH, Score=74.3, Expect=3e-17]} {Celegans: WBGene00010909, cisd-3.1, CDGSH Iron Sulfur Domain protein homolog, [RH, Score=74.3, Expect=4e-17]} {Smed: dd_Smed_v6_10541_0_1, dd_Smed_v6_10541_0_1, [RH, Score=120, Expect=2e-35]} {RNA1509_25702} {RNA1310_22872} {RNA815_22621.2}
2. MligTC455_32996 35 0.73 Mlig455_039006

Neo: -

Age: -

 0.964 - 0.964 - - - - Mlig455_039006 {REF} {Length: 1342} {RNA1509_43135} {RNA1310_50569} {RNA815_3411}
3. MligTC455_07132 192 4 Mlig455_016153, Mlig455_029293, Mlig455_043294, Mlig455_044231, Mlig455_044250, Mlig455_047131

Neo: Germline

Age: -

 0.951 - 0.951 - - - -

Mlig455_016153 {REF} {Length: 222} {NoTransDecoderORF} {RNA1310_143360} {RNA815_30147}

Mlig455_029293 {REF} {Length: 1363} {RNA1509_12139} {RNA1310_44327} {RNA815_57457}

Mlig455_043294 {REF} {Length: 414} {NoTransDecoderORF} {RNA1509_12139} {RNA1310_15721} {RNA815_30147}

Mlig455_044231 {REF} {Length: 848} {RNA1509_12139} {RNA1310_14234} {RNA815_30147}

Mlig455_044250 {REF} {Length: 829} {RNA1509_12139} {RNA1310_14234} {RNA815_30147}

Mlig455_047131 {REF} {Length: 601} {RNA1310_44327} {RNA815_30147}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA