M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45916

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45916 53 1.09 Mlig455_035354

Neo: -

Age: Down-Up-Down

 Mlig455_035354 {REF} {Length: 775} {RNA1509_13458} {RNA1310_34859, RNA1509_13458} {RNA1509_13458, RNA815_24075}

Cumulative graph for MligTC455_45916

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.735 1.361 0.99966 1.00000
RegionR2 3.068 1.361 0.05403 0.27827
RegionR3 0.757 1.361 0.56733 1.00000
RegionR4 0.175 1.361 0.73923 1.00000
RegionR5 1.27 1.361 0.32415 0.66683
RegionR6 2.771 1.361 0.04139 0.38243
RegionR7 1.148 1.361 0.48472 1.00000
RegionR8 -3.454 1.361 0.99959 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1 1.361 0.99996 1.00000
RegenerationR2 1.742 1.361 0.04931 0.36669
RegenerationR3 3.222 1.361 0.00929 0.17596
RegenerationR4 2.932 1.361 0.01873 0.21479
RegenerationR5 1.116 1.361 0.29046 0.71830
RegenerationR6 0.317 1.361 0.76675 0.95989
RegenerationBL 0.828 1.361 0.67411 1.00000
RegenerationTP 3.863 1.361 0.07560 0.44028


Genes with expression patterns similar to MligTC455_45916

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45916 53 1.09 Mlig455_035354

Neo: -

Age: Down-Up-Down

 2 - - - 1.000 - 1.000 Mlig455_035354 {REF} {Length: 775} {RNA1509_13458} {RNA1310_34859, RNA1509_13458} {RNA1509_13458, RNA815_24075}
2. MligTC455_10695 139 2.89 Mlig455_002245

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_002245 {REF} {Length: 1939} {NoTransDecoderORF} {RNA1310_45257} {RNA815_55869}
3. MligTC455_44409 348 7.26 Mlig455_029682

Neo: -

Age: -

Region-enriched R2: 2.206/0.04419

 TRPM2 0.96 - - - - - 0.960 Mlig455_029682 {REF} {Length: 2938} {Pfam: Ion transport protein [PF00520.33, score=67.3]} {Human: ENSG00000142185, TRPM2, transient receptor potential cation channel subfamily M member 2, [Score=221, Expect=2e-59]; ENSG00000070985, TRPM5, transient receptor potential cation channel subfamily M member 5, [Score=216, Expect=3e-58]; ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=214, Expect=2e-57]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=217, Expect=2e-58]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=216, Expect=6e-58]; ENSMUSG00000009246, Trpm5, transient receptor potential cation channel, subfamily M, member 5, [Score=209, Expect=4e-56]; ENSMUSG00000009292, Trpm2, transient receptor potential cation channel, subfamily M, member 2, [Score=207, Expect=5e-55]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=189, Expect=3e-49]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=142, Expect=3e-34]} {Smed: dd_Smed_v6_11259_0_4, dd_Smed_v6_11259_0_4, [Score=197, Expect=2e-52]} {RNA1509_3961} {RNA1310_2331} {RNA815_666}
4. MligTC455_07752 130 2.7 Mlig455_013008

Neo: -

Age: -

 ANK3 0.955 - - - - - 0.955 Mlig455_013008 {REF} {Length: 3469} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=86.1]; Ankyrin repeats (many copies) [PF13637.8, score=80.6]; Ankyrin repeats (many copies) [PF13857.8, score=60.7]; Ankyrin repeat [PF13606.8, score=57.6]; Ankyrin repeat [PF00023.32, score=45.6]; DHHC palmitoyltransferase [PF01529.22, score=25.5]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=79.3, Expect=3e-14]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=79.0, Expect=2e-14]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=71.6, Expect=3e-12]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=68.9, Expect=2e-11]} {Smed: dd_Smed_v6_11895_0_1, dd_Smed_v6_11895_0_1, [Score=146, Expect=1e-36]} {RNA1509_18630} {RNA1310_9503} {RNA815_7486}
5. MligTC455_31085 56 1.17 Mlig455_012955

Neo: -

Age: -

Region-enriched R4: 4.450/0.01398

 ZFAND4 0.954 - - - 0.954 - - Mlig455_012955 {REF} {Length: 3260} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=53.8]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=25.1]; Ubiquitin-like domain [PF14560.8, score=19.5]} {Human: ENSG00000172671, ZFAND4, zinc finger AN1-type containing 4, [RH, Score=146, Expect=5e-39]} {Mouse: ENSMUSG00000042213, Zfand4, zinc finger, AN1-type domain 4, [RH, Score=150, Expect=2e-40]} {Dmel: FBgn0003941, RpL40, Ribosomal protein L40, [Score=64.3, Expect=1e-12]} {Celegans: WBGene00006728, ubq-2, Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40, [Score=62.0, Expect=7e-12]} {Smed: dd_Smed_v6_4992_0_1, dd_Smed_v6_4992_0_1, [RH, Score=141, Expect=1e-38]} {RNA1509_11475, RNA1509_27952} {RNA1310_28869, RNA1509_27952} {RNA1509_27952, RNA815_6580}
6. MligTC455_40920 747 15.57 Mlig455_001881

Neo: -

Age: logFC(26M/2M)=-0.279

 0.952 - - - 0.952 - - Mlig455_001881 {REF} {Length: 1249} {TRANSSPLICED} {Pfam: SpoIIIAH-like protein [PF12685.9, score=18.6]} {Mouse: ENSMUSG00000072720, Myo18b, myosin XVIIIb, [Score=48.9, Expect=3e-06]} {RNA1509_38076} {RNA1310_27251, RNA1509_38076} {RNA1509_38076, RNA815_13914.1}
7. MligTC455_13650 239 4.99 Mlig455_039992

Neo: -

Age: -

Region-enriched R4: 3.097/0.00751

 ANGPTL7 0.951 - - - - - 0.951 Mlig455_039992 {REF} {Length: 2440} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=126.0]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=106, Expect=3e-27]; ENSG00000120332, TNN, tenascin N, [Score=104, Expect=1e-25]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=101, Expect=8e-25]} {Mouse: ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=105, Expect=6e-27]; ENSMUSG00000026725, Tnn, tenascin N, [Score=101, Expect=1e-24]} {Dmel: FBgn0033312, CG8642, [Score=99.0, Expect=3e-24]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=97.8, Expect=7e-24]} {RNA1509_40283} {RNA1310_7627.1} {RNA815_29515}
8. MligTC455_27997 402 8.37 Mlig455_057028, Mlig455_057036

Neo: -

Age: -

Region-enriched R2: 3.762/0.00007

 HK2 0.951 - - - - - 0.951

Mlig455_057028 {REF} {Length: 3324} {TRANSSPLICED} {Pfam: Hexokinase [PF03727.18, score=261.4]; Hexokinase [PF00349.23, score=174.5]} {Human: ENSG00000159399, HK2, hexokinase 2, [Score=321, Expect=1e-99]; ENSG00000156515, HK1, hexokinase 1, [Score=314, Expect=6e-97]; ENSG00000156510, HKDC1, hexokinase domain containing 1, [Score=312, Expect=2e-96]; ENSG00000160883, HK3, hexokinase 3, [Score=311, Expect=7e-96]} {Mouse: ENSMUSG00000037012, Hk1, hexokinase 1, [Score=321, Expect=9e-100]; ENSMUSG00000000628, Hk2, hexokinase 2, [Score=318, Expect=9e-99]; ENSMUSG00000020080, Hkdc1, hexokinase domain containing 1, [Score=309, Expect=4e-95]; ENSMUSG00000025877, Hk3, hexokinase 3, [Score=309, Expect=1e-95]} {Dmel: FBgn0001186, Hex-A, Hexokinase A, [RH, Score=352, Expect=1e-115]} {Celegans: WBGene00008780, hxk-1, Phosphotransferase, [Score=341, Expect=3e-112]} {Smed: dd_Smed_v6_4327_0_1, dd_Smed_v6_4327_0_1, [Score=442, Expect=1e-152]} {RNA1509_24721, RNA1509_48688, RNA1509_52831} {RNA1310_7926.3, RNA1509_24721, RNA1509_48688, RNA1509_52831} {RNA1509_24721, RNA1509_48688, RNA1509_52831, RNA815_2880}

Mlig455_057036 {REF} {Length: 3501} {TRANSSPLICED} {Pfam: Hexokinase [PF03727.18, score=261.4]; Hexokinase [PF00349.23, score=174.5]} {Human: ENSG00000159399, HK2, hexokinase 2, [Score=321, Expect=1e-99]; ENSG00000156515, HK1, hexokinase 1, [Score=314, Expect=6e-97]; ENSG00000156510, HKDC1, hexokinase domain containing 1, [Score=312, Expect=2e-96]; ENSG00000160883, HK3, hexokinase 3, [Score=311, Expect=7e-96]} {Mouse: ENSMUSG00000037012, Hk1, hexokinase 1, [Score=321, Expect=9e-100]; ENSMUSG00000000628, Hk2, hexokinase 2, [Score=318, Expect=9e-99]; ENSMUSG00000020080, Hkdc1, hexokinase domain containing 1, [Score=309, Expect=4e-95]; ENSMUSG00000025877, Hk3, hexokinase 3, [Score=309, Expect=1e-95]} {Dmel: FBgn0001186, Hex-A, Hexokinase A, [RH, Score=352, Expect=1e-115]} {Celegans: WBGene00008780, hxk-1, Phosphotransferase, [Score=341, Expect=3e-112]} {Smed: dd_Smed_v6_4327_0_1, dd_Smed_v6_4327_0_1, [Score=442, Expect=1e-152]} {RNA1509_42767} {RNA1310_7926.2, RNA1509_42767} {RNA1509_42767, RNA815_2880}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA