M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45939

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45939 38 0.80 Mlig455_012789

Neo: -

Age: logFC(26M/2M)=0.445

Region-enriched R5: 4.139/0.00537

 TATDN3 Mlig455_012789 {REF} {Length: 1992} {TRANSSPLICED} {Pfam: TatD related DNase [PF01026.23, score=162.7]} {Human: ENSG00000203705, TATDN3, TatD DNase domain containing 3, [RH, Score=225, Expect=1e-72]} {Mouse: ENSMUSG00000026632, Tatdn3, TatD DNase domain containing 3, [RH, Score=243, Expect=2e-79]} {Dmel: FBgn0038877, CG3308, [Score=85.5, Expect=7e-19]} {Celegans: WBGene00015189, B0432.8, [RH, Score=139, Expect=1e-39]} {Smed: dd_Smed_v6_9083_0_1, dd_Smed_v6_9083_0_1, [Score=63.2, Expect=2e-11]} {RNA1509_45959} {RNA1310_34253, RNA1509_45959} {RNA1509_45959, RNA815_46851}

Cumulative graph for MligTC455_45939

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.694 1.393 0.99959 1.00000
RegionR2 1.979 1.393 0.27407 0.65889
RegionR3 3.158 1.393 0.02832 0.28824
RegionR4 2.272 1.393 0.10585 0.31969
RegionR5 4.139 1.393 0.00044 0.00537
RegionR6 1.574 1.393 0.28552 0.87596
RegionR7 -3.361 1.393 0.99973 1.00000
RegionR8 -4.068 1.393 0.99973 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.214 1.393 0.99999 1.00000
RegenerationR2 -3.856 1.393 0.00844 0.14669
RegenerationR3 -1.674 1.393 0.17994 0.61602
RegenerationR4 -1.026 1.393 0.55376 0.89380
RegenerationR5 -1.676 1.393 0.08908 0.45930
RegenerationR6 -0.835 1.393 0.54810 0.83815
RegenerationBL -1.092 1.393 0.99986 1.00000
RegenerationTP 0.564 1.393 1.00000 1.00000


Genes with expression patterns similar to MligTC455_45939

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45939 38 0.8 Mlig455_012789

Neo: -

Age: logFC(26M/2M)=0.445

Region-enriched R5: 4.139/0.00537

 TATDN3 5 1.000 1.000 1.000 - 1.000 1.000 Mlig455_012789 {REF} {Length: 1992} {TRANSSPLICED} {Pfam: TatD related DNase [PF01026.23, score=162.7]} {Human: ENSG00000203705, TATDN3, TatD DNase domain containing 3, [RH, Score=225, Expect=1e-72]} {Mouse: ENSMUSG00000026632, Tatdn3, TatD DNase domain containing 3, [RH, Score=243, Expect=2e-79]} {Dmel: FBgn0038877, CG3308, [Score=85.5, Expect=7e-19]} {Celegans: WBGene00015189, B0432.8, [RH, Score=139, Expect=1e-39]} {Smed: dd_Smed_v6_9083_0_1, dd_Smed_v6_9083_0_1, [Score=63.2, Expect=2e-11]} {RNA1509_45959} {RNA1310_34253, RNA1509_45959} {RNA1509_45959, RNA815_46851}
2. MligTC455_10123 149 3.1 Mlig455_038373

Neo: -

Age: -

 SIK3 1.681 - - 0.725 - 0.956 - Mlig455_038373 {REF} {Length: 5401} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=229.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=121.0]; Kinase-like [PF14531.8, score=27.2]; Phosphotransferase enzyme family [PF01636.25, score=18.9]} {Human: ENSG00000160584, SIK3, SIK family kinase 3, [Score=327, Expect=1e-95]; ENSG00000170145, SIK2, salt inducible kinase 2, [Score=318, Expect=8e-95]} {Mouse: ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=328, Expect=3e-96]; ENSMUSG00000037112, Sik2, salt inducible kinase 2, [Score=320, Expect=1e-95]} {Dmel: FBgn0025625, Sik2, Salt-inducible kinase 2, [Score=323, Expect=2e-94]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=290, Expect=2e-84]} {Smed: dd_Smed_v6_8348_0_2, dd_Smed_v6_8348_0_2, [RH, Score=373, Expect=1e-112]} {RNA1509_14551, RNA1509_56378} {RNA1310_21972.1, RNA1509_14551, RNA1509_56378} {RNA1509_14551, RNA1509_56378, RNA815_29595}
3. MligTC455_00231 2 0.05 Mlig455_019221

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_019221 {REF} {Length: 22} {NoTransDecoderORF}
4. MligTC455_51952 8 0.16 Mlig455_042764

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_042764 {REF} {Length: 1388} {TRANSSPLICED} {RNA1310_35048} {RNA815_19493}
5. MligTC455_08552 9 0.19 Mlig455_035178

Neo: -

Age: -

 0.996 - - - - 0.996 - Mlig455_035178 {REF} {Length: 1114} {NoTransDecoderORF} {RNA1509_59036} {RNA1310_63231, RNA1509_59036}
6. MligTC455_06640 4 0.09 Mlig455_028790

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_028790 {REF} {Length: 1205} {NoTransDecoderORF} {RNA1310_93347} {RNA815_23469.1}
7. MligTC455_21582 28 0.58 Mlig455_048795

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_048795 {REF} {Length: 582} {NoTransDecoderORF}
8. MligTC455_38887 4 0.07 Mlig455_026711

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_026711 {REF} {Length: 3396} {TRANSSPLICED} {Pfam: AIG1 family [PF04548.18, score=33.3]; Type II/IV secretion system protein [PF00437.22, score=24.4]; 50S ribosome-binding GTPase [PF01926.25, score=24.0]; AAA domain [PF13476.8, score=23.2]; Septin [PF00735.20, score=22.4]; FtsK/SpoIIIE family [PF01580.20, score=22.2]; ABC transporter [PF00005.29, score=22.1]; P-loop containing region of AAA domain [PF13555.8, score=20.1]; AAA domain [PF13401.8, score=18.9]} {Celegans: WBGene00015956, C18B2.5, [Score=66.2, Expect=5e-11]} {RNA1509_21324} {RNA1310_2983} {RNA815_977}
9. MligTC455_34974 179 3.74 Mlig455_065975

Neo: Irradiation

Age: -

 UCKL1 0.977 - - 0.977 - - - Mlig455_065975 {REF} {Length: 2874} {TRANSSPLICED} {Pfam: Uracil phosphoribosyltransferase [PF14681.8, score=201.0]; Phosphoribulokinase / Uridine kinase family [PF00485.20, score=186.5]; AAA domain [PF13238.8, score=25.0]; AAA domain [PF13671.8, score=22.7]; Chloramphenicol phosphotransferase-like protein [PF07931.14, score=20.1]} {Human: ENSG00000198276, UCKL1, uridine-cytidine kinase 1 like 1, [Score=525, Expect=0.0]} {Mouse: ENSMUSG00000089917, Uckl1, uridine-cytidine kinase 1-like 1, [Score=524, Expect=0.0]} {Dmel: FBgn0022029, l(2)k01209, lethal (2) k01209, [Score=507, Expect=1e-175]} {Celegans: WBGene00008948, F19B6.1, Uridine kinase, [RH, Score=493, Expect=3e-170]} {Smed: dd_Smed_v6_2901_0_1, dd_Smed_v6_2901_0_1, [Score=507, Expect=1e-176]} {RNA1509_17109, RNA1509_51186} {RNA1310_13278, RNA1509_17109, RNA1509_51186} {RNA1509_17109, RNA1509_51186, RNA815_5837}
10. MligTC455_51292 104 2.17 Mlig455_015361

Neo: -

Age: -

 PPCDC 0.977 - - 0.977 - - - Mlig455_015361 {REF} {Length: 1758} {TRANSSPLICED} {Pfam: Flavoprotein [PF02441.21, score=149.4]} {Human: ENSG00000138621, PPCDC, phosphopantothenoylcysteine decarboxylase, [RH, Score=202, Expect=1e-65]} {Mouse: ENSMUSG00000063849, Ppcdc, phosphopantothenoylcysteine decarboxylase, [RH, Score=204, Expect=9e-67]} {Dmel: FBgn0050290, Ppcdc, Phosphopantothenoylcysteine decarboxylase, [RH, Score=185, Expect=1e-59]} {Celegans: WBGene00009138, F25H9.6, [RH, Score=159, Expect=6e-49]} {Smed: dd_Smed_v6_7368_0_1, dd_Smed_v6_7368_0_1, [RH, Score=172, Expect=2e-54]} {RNA1509_44762} {RNA1310_40754} {RNA815_25782}
11. MligTC455_26569 11 0.22 Mlig455_009322, Mlig455_022836, Mlig455_025092, Mlig455_025097, Mlig455_052914, Mlig455_054666

Neo: Germline

Age: -

 PIF1 0.973 - - - - 0.973 -

Mlig455_009322 {REF} {Length: 644} {Pfam: PIF1-like helicase [PF05970.16, score=83.4]; UvrD-like helicase C-terminal domain [PF13538.8, score=29.1]; Helicase [PF02689.16, score=18.2]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=59.3, Expect=4e-10]} {Celegans: WBGene00021577, Y46B2A.2, [Score=138, Expect=2e-37]} {Smed: dd_Smed_v6_19520_0_6, dd_Smed_v6_19520_0_6, [Score=79.7, Expect=9e-20]} {RNA1509_16163} {RNA1310_14011} {RNA815_50029}

Mlig455_022836 {REF} {Length: 5858} {Pfam: PIF1-like helicase [PF05970.16, score=333.2]; Helitron helicase-like domain at N-terminus [PF14214.8, score=174.2]; AAA domain [PF13604.8, score=47.7]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.5]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=4e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=110, Expect=3e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=116, Expect=5e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=740, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=110, Expect=3e-24]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}

Mlig455_025092 {REF} {Length: 6768} {Pfam: PIF1-like helicase [PF05970.16, score=330.6]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.4]; AAA domain [PF13604.8, score=46.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.7]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=5e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=109, Expect=9e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=116, Expect=5e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=741, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=110, Expect=1e-24]} {RNA1509_16163} {RNA1310_2680.1, RNA1509_16163} {RNA1509_16163, RNA815_356.1}

Mlig455_025097 {REF} {Length: 4900} {Pfam: PIF1-like helicase [PF05970.16, score=330.6]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.4]; AAA domain [PF13604.8, score=46.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.7]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=5e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=109, Expect=9e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=116, Expect=5e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=741, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=110, Expect=1e-24]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}

Mlig455_052914 {REF} {Length: 5871} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=175.0]} {Celegans: WBGene00019136, F59H6.5, [Score=521, Expect=3e-162]} {Smed: dd_Smed_v6_91935_0_1, dd_Smed_v6_91935_0_1, [Score=69.7, Expect=8e-14]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}

Mlig455_054666 {REF} {Length: 5148} {Pfam: PIF1-like helicase [PF05970.16, score=333.4]; Helitron helicase-like domain at N-terminus [PF14214.8, score=174.4]; AAA domain [PF13604.8, score=47.9]; UvrD-like helicase C-terminal domain [PF13538.8, score=19.1]; AAA domain [PF13245.8, score=18.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=6e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=109, Expect=9e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=114, Expect=2e-25]} {Celegans: WBGene00018020, F33H12.6, [Score=722, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=108, Expect=7e-24]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}
12. MligTC455_22208 15 0.31 Mlig455_014994

Neo: -

Age: Down-Up-Down

 ASIC1 0.97 - - - - 0.970 - Mlig455_014994 {REF} {Length: 2832} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=172.7]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=53.9, Expect=8e-07]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=53.1, Expect=9e-07]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=67.4, Expect=2e-11]} {Smed: dd_Smed_v6_16346_0_1, dd_Smed_v6_16346_0_1, [Score=112, Expect=1e-25]} {RNA1509_26567} {RNA1310_9266.1} {RNA815_6618}
13. MligTC455_42291 32 0.67 Mlig455_048550

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_048550 {REF} {Length: 2571} {NoTransDecoderORF} {RNA1509_47422} {RNA1310_16235.1} {RNA815_16690}
14. MligTC455_46264 7 0.15 Mlig455_069600

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_069600 {REF} {Length: 1388} {NoTransDecoderORF} {RNA1509_8113} {RNA1310_26749}
15. MligTC455_03519 37 0.77 Mlig455_001536, Mlig455_046568

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_001536 {REF} {Length: 546} {Smed: dd_Smed_v6_16907_0_1, dd_Smed_v6_16907_0_1, [RH, Score=43.1, Expect=2e-06]} {RNA1509_18050} {RNA1310_39689.1} {RNA815_35352}

Mlig455_046568 {REF} {Length: 961} {Pfam: Sleepless protein [PF17064.7, score=30.1]} {Smed: dd_Smed_v6_16907_0_2, dd_Smed_v6_16907_0_2, [Score=78.2, Expect=5e-19]} {RNA1310_47178} {RNA815_35352}
16. MligTC455_13327 13 0.27 Mlig455_019128

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_019128 {REF} {Length: 699} {NoTransDecoderORF} {RNA1310_56924}
17. MligTC455_14044 16 0.33 Mlig455_027191

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_027191 {REF} {Length: 924} {NoTransDecoderORF} {RNA1509_50394} {RNA1310_30930.1} {RNA815_47425}
18. MligTC455_30816 32 0.66 Mlig455_029073

Neo: -

Age: Up-Down-Down

 BCHE 0.96 - - - - 0.960 - Mlig455_029073 {REF} {Length: 3062} {Pfam: Carboxylesterase family [PF00135.30, score=306.9]} {Human: ENSG00000114200, BCHE, butyrylcholinesterase, [Score=201, Expect=2e-57]; ENSG00000087085, ACHE, acetylcholinesterase (Cartwright blood group), [Score=200, Expect=7e-57]} {Mouse: ENSMUSG00000023328, Ache, acetylcholinesterase, [Score=199, Expect=1e-56]; ENSMUSG00000027792, Bche, butyrylcholinesterase, [Score=191, Expect=9e-54]} {Dmel: FBgn0000024, Ace, Acetylcholine esterase, [Score=166, Expect=1e-44]} {Celegans: WBGene00000035, ace-1, Acetylcholinesterase 1, [Score=183, Expect=4e-51]} {Smed: dd_Smed_v6_10334_0_1, dd_Smed_v6_10334_0_1, [Score=157, Expect=2e-41]} {RNA1509_58431} {RNA1310_12691, RNA1509_58431} {RNA1509_58431, RNA815_28725}
19. MligTC455_47041 22 0.46 Mlig455_054266

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_054266 {REF} {Length: 1075} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}
20. MligTC455_09190 4 0.08 Mlig455_024166

Neo: Int S/G2/M

Age: -

 0.956 - - - - 0.956 - Mlig455_024166 {REF} {Length: 1323} {NoTransDecoderORF} {RNA1509_14379} {RNA1310_70722} {RNA815_318.5}
21. MligTC455_51609 26 0.55 Mlig455_059418

Neo: -

Age: -

 FAAH 0.955 - - - - 0.955 - Mlig455_059418 {REF} {Length: 2674} {Pfam: Amidase [PF01425.23, score=256.5]} {Human: ENSG00000117480, FAAH, fatty acid amide hydrolase, [Score=243, Expect=7e-72]} {Mouse: ENSMUSG00000034171, Faah, fatty acid amide hydrolase, [Score=252, Expect=2e-75]} {Dmel: FBgn0037547, CG7910, [Score=103, Expect=4e-23]} {Celegans: WBGene00019068, faah-3, Fatty Acid Amide Hydrolase homolog, [Score=266, Expect=3e-81]} {Smed: dd_Smed_v6_3298_0_1, dd_Smed_v6_3298_0_1, [Score=358, Expect=3e-116]} {RNA1310_26916} {RNA815_54676}
22. MligTC455_15200 20 0.41 Mlig455_004648

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_004648 {REF} {Length: 738} {NoTransDecoderORF} {RNA1310_130617}
23. MligTC455_24925 8 0.17 Mlig455_025366

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_025366 {REF} {Length: 2222} {NoTransDecoderORF} {RNA1310_99653}
24. MligTC455_01568 12 0.26 Mlig455_039099

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_039099 {REF} {Length: 674} {RNA1509_5680} {RNA1310_23017} {RNA815_194.1}
25. MligTC455_01983 2 0.03 Mlig455_006220

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_006220 {REF} {Length: 596} {NoTransDecoderORF} {RNA1509_52909} {RNA1310_37646} {RNA815_19722}
26. MligTC455_06406 2 0.04 Mlig455_016507

Neo: -

Age: -

 SETMAR 0.951 - - - - 0.951 - Mlig455_016507 {REF} {Length: 963} {TRANSSPLICED} {Pfam: DDE superfamily endonuclease [PF13358.8, score=20.3]; Integrase core domain [PF00665.28, score=18.8]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=80.5, Expect=1e-18]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=80.5, Expect=3e-21]} {RNA1310_78312} {RNA815_32347}
27. MligTC455_09244 6 0.12 Mlig455_035325

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_035325 {REF} {Length: 369} {NoTransDecoderORF} {RNA1509_50625} {RNA1310_119855} {RNA815_42229}
28. MligTC455_13285 12 0.26 Mlig455_039098

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_039098 {REF} {Length: 711} {RNA1509_5680} {RNA1310_23017} {RNA815_194.1}
29. MligTC455_51717 52 1.08 Mlig455_001880

Neo: -

Age: Down-Up-Up

 0.951 - - - - 0.951 - Mlig455_001880 {REF} {Length: 1251} {TRANSSPLICED} {RNA1310_62660} {RNA815_37836}
30. MligTC455_55847 13 0.27 Mlig455_041509

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_041509 {REF} {Length: 414}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA