M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45995

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45995 992 20.68 Mlig455_007287, Mlig455_007300

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.274

Regeneration-enriched R4: 3.594
Regeneration-enriched R6: 3.456

Mlig455_007287 {REF} {Length: 588} {RNA1310_68168} {RNA815_37192.1}

Mlig455_007300 {REF} {Length: 688} {RNA1310_68168} {RNA815_37192.1}

Cumulative graph for MligTC455_45995

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.99 4.301 0.15517 0.77294
RegionR2 -0.059 4.301 0.87065 1.00000
RegionR3 0.763 4.301 0.45755 0.96759
RegionR4 0.351 4.301 0.73259 1.00000
RegionR5 1.046 4.301 0.28931 0.62031
RegionR6 0.26 4.301 0.74747 1.00000
RegionR7 2.614 4.301 0.00187 0.05418
RegionR8 1.015 4.301 0.36839 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 8.065 4.301 0.02365 0.59347
RegenerationR2 2.096 4.301 0.01264 0.18313
RegenerationR3 2.615 4.301 0.00260 0.08913
RegenerationR4 3.594 4.301 0.00009 0.00658
RegenerationR5 2.199 4.301 0.00786 0.16107
RegenerationR6 3.456 4.301 0.00009 0.00835
RegenerationBL 1.932 4.301 0.00759 0.08503
RegenerationTP 0.676 4.301 0.41599 0.84115


Genes with expression patterns similar to MligTC455_45995

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45995 992 20.68 Mlig455_007287, Mlig455_007300

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.274

Regeneration-enriched R4: 3.594
Regeneration-enriched R6: 3.456

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_007287 {REF} {Length: 588} {RNA1310_68168} {RNA815_37192.1}

Mlig455_007300 {REF} {Length: 688} {RNA1310_68168} {RNA815_37192.1}
2. MligTC455_45996 603 12.56 Mlig455_068317

Neo: -

Age: -

Region-enriched R7: 2.717/0.03418

Regeneration-enriched R4: 4.973
Regeneration-enriched R6: 3.822
Regeneration-enriched R5: 3.470
Regeneration-enriched R3: 3.461

 4.768 0.997 0.988 - 0.963 0.912 0.908 Mlig455_068317 {REF} {Length: 479} {RNA1310_68168} {RNA815_37192.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA