M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46114

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46114 230 4.80 Mlig455_001902

Neo: -

Age: Up-Down-Up

 CRY1 Mlig455_001902 {REF} {Length: 2964} {Pfam: FAD binding domain of DNA photolyase [PF03441.16, score=194.7]; DNA photolyase [PF00875.20, score=137.2]} {Human: ENSG00000008405, CRY1, cryptochrome circadian regulator 1, [RH, Score=462, Expect=4e-155]; ENSG00000121671, CRY2, cryptochrome circadian regulator 2, [RH, Score=451, Expect=6e-151]} {Mouse: ENSMUSG00000020038, Cry1, cryptochrome 1 (photolyase-like), [RH, Score=462, Expect=5e-155]; ENSMUSG00000068742, Cry2, cryptochrome 2 (photolyase-like), [RH, Score=459, Expect=5e-154]} {Dmel: FBgn0016054, phr6-4, (6-4)-photolyase, [RH, Score=361, Expect=8e-117]} {RNA1509_28219} {RNA1310_6554} {RNA815_8162}

Cumulative graph for MligTC455_46114

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.516 2.83 0.75603 1.00000
RegionR2 -0.534 2.83 0.40879 0.80184
RegionR3 -0.469 2.83 0.36445 0.89898
RegionR4 0.739 2.83 0.24337 0.54125
RegionR5 0.025 2.83 0.95561 1.00000
RegionR6 0.079 2.83 0.87465 1.00000
RegionR7 -1.026 2.83 0.19990 0.80741
RegionR8 0.671 2.83 0.37474 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.995 2.83 0.24511 0.96633
RegenerationR2 0.153 2.83 0.75783 0.97593
RegenerationR3 -0.036 2.83 0.94790 1.00000
RegenerationR4 -1.16 2.83 0.05467 0.37611
RegenerationR5 -0.125 2.83 0.80120 0.98891
RegenerationR6 -1.637 2.83 0.01106 0.12985
RegenerationBL -0.336 2.83 0.67566 1.00000
RegenerationTP -0.945 2.83 0.27837 0.72600


Genes with expression patterns similar to MligTC455_46114

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46114 230 4.8 Mlig455_001902

Neo: -

Age: Up-Down-Up

 CRY1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_001902 {REF} {Length: 2964} {Pfam: FAD binding domain of DNA photolyase [PF03441.16, score=194.7]; DNA photolyase [PF00875.20, score=137.2]} {Human: ENSG00000008405, CRY1, cryptochrome circadian regulator 1, [RH, Score=462, Expect=4e-155]; ENSG00000121671, CRY2, cryptochrome circadian regulator 2, [RH, Score=451, Expect=6e-151]} {Mouse: ENSMUSG00000020038, Cry1, cryptochrome 1 (photolyase-like), [RH, Score=462, Expect=5e-155]; ENSMUSG00000068742, Cry2, cryptochrome 2 (photolyase-like), [RH, Score=459, Expect=5e-154]} {Dmel: FBgn0016054, phr6-4, (6-4)-photolyase, [RH, Score=361, Expect=8e-117]} {RNA1509_28219} {RNA1310_6554} {RNA815_8162}
2. MligTC455_53915 113 2.36 Mlig455_018452

Neo: -

Age: -

 1.822 - - - 0.957 0.865 - Mlig455_018452 {REF} {Length: 3976} {TRANSSPLICED} {Pfam: Cadherin-like beta sandwich domain [PF12733.9, score=98.5]; TPR repeat [PF13414.8, score=29.6]; Tetratricopeptide repeat [PF07719.19, score=24.7]; Tetratricopeptide repeat [PF13428.8, score=23.1]; Tetratricopeptide repeat [PF13424.8, score=22.6]; Tetratricopeptide repeat [PF14559.8, score=22.0]} {Smed: dd_Smed_v6_13836_0_1, dd_Smed_v6_13836_0_1, [RH, Score=277, Expect=2e-77]} {RNA1509_15096} {RNA1310_1559.1} {RNA815_7116}
3. MligTC455_17841 139 2.89 Mlig455_010431

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.378

 NARS 0.966 - - - - 0.966 - Mlig455_010431 {REF} {Length: 2666} {TRANSSPLICED} {Human: ENSG00000134440, NARS, asparaginyl-tRNA synthetase, [RH, Score=92.8, Expect=5e-24]} {Mouse: ENSMUSG00000024587, Nars, asparaginyl-tRNA synthetase, [Score=89.4, Expect=8e-21]} {Dmel: FBgn0086443, AsnRS, Asparaginyl-tRNA synthetase, [Score=100, Expect=8e-25]} {RNA1509_5093} {RNA1310_14490} {RNA815_5353}
4. MligTC455_51658 123 2.56 Mlig455_028791

Neo: -

Age: Down-Up-Down

 0.961 0.961 - - - - - Mlig455_028791 {REF} {Length: 2943} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=22.8]} {RNA1509_58492} {RNA1310_6222.1, RNA1509_58492} {RNA1509_58492, RNA815_11096}
5. MligTC455_18999 1108 23.09 Mlig455_021408

Neo: -

Age: Down-Down-Down

 PRR9 0.955 - - - - 0.955 - Mlig455_021408 {REF} {Length: 1175} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=45.8, Expect=2e-06]} {RNA1509_13218} {RNA1310_47947.1} {RNA815_7465}
6. MligTC455_37560 341 7.1 Mlig455_025591

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_025591 {REF} {Length: 4114} {Celegans: WBGene00007159, B0379.7, [RH, Score=57.0, Expect=2e-09]} {RNA1509_17713} {RNA1310_21671.1} {RNA815_7987.1}
7. MligTC455_52538 135 2.82 Mlig455_047397

Neo: -

Age: -

 KCNIP3 0.952 - - - 0.952 - - Mlig455_047397 {REF} {Length: 1022} {Pfam: EF-hand domain pair [PF13499.8, score=43.4]; EF hand [PF00036.34, score=41.6]; EF-hand domain [PF13405.8, score=37.6]; EF-hand domain pair [PF13833.8, score=27.5]; EF hand [PF13202.8, score=20.3]} {Human: ENSG00000115041, KCNIP3, potassium voltage-gated channel interacting protein 3, [Score=152, Expect=1e-44]; ENSG00000185774, KCNIP4, potassium voltage-gated channel interacting protein 4, [Score=150, Expect=5e-44]; ENSG00000120049, KCNIP2, potassium voltage-gated channel interacting protein 2, [Score=148, Expect=2e-43]; ENSG00000182132, KCNIP1, potassium voltage-gated channel interacting protein 1, [Score=145, Expect=3e-42]} {Mouse: ENSMUSG00000079056, Kcnip3, Kv channel interacting protein 3, calsenilin, [Score=153, Expect=1e-44]; ENSMUSG00000029088, Kcnip4, Kv channel interacting protein 4, [Score=150, Expect=3e-44]; ENSMUSG00000025221, Kcnip2, Kv channel-interacting protein 2, [Score=149, Expect=2e-43]; ENSMUSG00000053519, Kcnip1, Kv channel-interacting protein 1, [Score=146, Expect=7e-43]} {Dmel: FBgn0265595, CG44422, [Score=160, Expect=2e-46]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [Score=132, Expect=3e-38]} {Smed: dd_Smed_v6_9434_0_1, dd_Smed_v6_9434_0_1, [Score=142, Expect=9e-42]} {RNA1509_26771} {RNA1310_17572} {RNA815_13854}
8. MligTC455_52996 3423 71.32 Mlig455_046719, Mlig455_046841, Mlig455_046847

Neo: -

Age: -

Region-enriched R4: 1.115/0.03488

 CERS6 0.95 - - - 0.950 - -

Mlig455_046719 {REF} {Length: 3175} {Pfam: TLC domain [PF03798.18, score=139.5]; Homeodomain [PF00046.31, score=20.1]} {Human: ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=256, Expect=1e-81]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [Score=266, Expect=2e-85]} {Dmel: FBgn0040918, schlank, [Score=222, Expect=9e-69]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [Score=146, Expect=4e-41]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [Score=239, Expect=6e-76]} {RNA1509_17274, RNA1509_21825, RNA1509_30847} {RNA1310_26094.1, RNA1509_21825, RNA1509_30847} {RNA1509_21825, RNA1509_30847, RNA815_5615.1}

Mlig455_046841 {REF} {Length: 2480} {TRANSSPLICED} {Pfam: TLC domain [PF03798.18, score=139.5]; Homeodomain [PF00046.31, score=20.1]} {Human: ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=256, Expect=1e-81]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [Score=266, Expect=2e-85]} {Dmel: FBgn0040918, schlank, [Score=222, Expect=9e-69]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [Score=146, Expect=4e-41]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [Score=239, Expect=6e-76]} {RNA1509_17274, RNA1509_21271, RNA1509_52847} {RNA1310_26094.1, RNA1509_21271, RNA1509_52847} {RNA1509_21271, RNA1509_52847, RNA815_5615.1}

Mlig455_046847 {REF} {Length: 2232} {TRANSSPLICED} {Pfam: TLC domain [PF03798.18, score=139.9]; Homeodomain [PF00046.31, score=20.0]} {Human: ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=254, Expect=3e-81]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [Score=267, Expect=7e-86]} {Dmel: FBgn0040918, schlank, [Score=223, Expect=2e-69]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [Score=147, Expect=2e-41]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [Score=240, Expect=2e-76]} {RNA1509_17274} {RNA1310_26094.1, RNA1509_17274} {RNA1509_17274, RNA815_5615.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA