M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46148

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46148 488 10.17 Mlig455_001570

Neo: -

Age: -

Region-enriched R4: 1.292/0.03480

 DUSP14 Mlig455_001570 {REF} {Length: 932} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=93.3]} {Human: ENSG00000276023, DUSP14, dual specificity phosphatase 14, [Score=114, Expect=2e-32]; ENSG00000275932, DUSP14, dual specificity phosphatase 14, [Score=114, Expect=2e-32]; ENSG00000167065, DUSP18, dual specificity phosphatase 18, [Score=110, Expect=5e-31]} {Mouse: ENSMUSG00000018648, Dusp14, dual specificity phosphatase 14, [Score=113, Expect=5e-32]; ENSMUSG00000047205, Dusp18, dual specificity phosphatase 18, [Score=111, Expect=3e-31]} {Dmel: FBgn0039742, CG15528, [RH, Score=105, Expect=8e-29]} {Celegans: WBGene00007302, C04F12.8, [Score=126, Expect=1e-36]} {Smed: dd_Smed_v6_7558_0_1, dd_Smed_v6_7558_0_1, [Score=105, Expect=2e-28]} {RNA1509_23854} {RNA1310_51136} {RNA815_23412.1}

Cumulative graph for MligTC455_46148

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.168 3.737 0.86793 1.00000
RegionR2 0.134 3.737 0.80868 1.00000
RegionR3 -0.533 3.737 0.26686 0.81117
RegionR4 1.292 3.737 0.00474 0.03480
RegionR5 -0.002 3.737 0.99892 1.00000
RegionR6 -0.046 3.737 0.92269 1.00000
RegionR7 -0.014 3.737 0.98157 1.00000
RegionR8 -0.663 3.737 0.38693 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.972 3.737 0.08486 0.78461
RegenerationR2 0.403 3.737 0.40257 0.81599
RegenerationR3 0.07 3.737 0.90318 1.00000
RegenerationR4 -1.261 3.737 0.01329 0.17917
RegenerationR5 -0.639 3.737 0.19556 0.62707
RegenerationR6 -1.31 3.737 0.03254 0.22545
RegenerationBL -0.341 3.737 0.61773 0.96119
RegenerationTP 1.129 3.737 0.07323 0.43323


Genes with expression patterns similar to MligTC455_46148

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46148 488 10.17 Mlig455_001570

Neo: -

Age: -

Region-enriched R4: 1.292/0.03480

 DUSP14 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_001570 {REF} {Length: 932} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=93.3]} {Human: ENSG00000276023, DUSP14, dual specificity phosphatase 14, [Score=114, Expect=2e-32]; ENSG00000275932, DUSP14, dual specificity phosphatase 14, [Score=114, Expect=2e-32]; ENSG00000167065, DUSP18, dual specificity phosphatase 18, [Score=110, Expect=5e-31]} {Mouse: ENSMUSG00000018648, Dusp14, dual specificity phosphatase 14, [Score=113, Expect=5e-32]; ENSMUSG00000047205, Dusp18, dual specificity phosphatase 18, [Score=111, Expect=3e-31]} {Dmel: FBgn0039742, CG15528, [RH, Score=105, Expect=8e-29]} {Celegans: WBGene00007302, C04F12.8, [Score=126, Expect=1e-36]} {Smed: dd_Smed_v6_7558_0_1, dd_Smed_v6_7558_0_1, [Score=105, Expect=2e-28]} {RNA1509_23854} {RNA1310_51136} {RNA815_23412.1}
2. MligTC455_32836 611 12.73 Mlig455_048679

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-2.649

Region-specific R4: 2.914

Region-enriched R4: 1.358/0.00869

Regeneration-downregulated R4: -1.621

Regeneration-depleted R4: -1.621

 OVCA2 1.691 0.950 0.741 - - - - Mlig455_048679 {REF} {Length: 1906} {TRANSSPLICED} {Pfam: Serine hydrolase (FSH1) [PF03959.15, score=160.1]} {Human: ENSG00000262664, OVCA2, OVCA2, serine hydrolase domain containing, [RH, Score=97.8, Expect=8e-24]} {Mouse: ENSMUSG00000038268, Ovca2, candidate tumor suppressor in ovarian cancer 2, [RH, Score=109, Expect=2e-28]} {Dmel: FBgn0038806, CG5412, [RH, Score=132, Expect=9e-37]} {Celegans: WBGene00007730, C25G4.2, Esterase C25G4.2, [RH, Score=119, Expect=2e-32]} {Smed: dd_Smed_v6_16753_0_1, dd_Smed_v6_16753_0_1, [RH, Score=130, Expect=6e-37]} {RNA1509_10102, RNA1509_30147, RNA1509_45677, RNA1509_4901} {RNA1310_3981.1, RNA1509_10102, RNA1509_30147, RNA1509_45677, RNA1509_4901} {RNA1509_10102, RNA1509_30147, RNA1509_45677, RNA1509_4901, RNA815_10934.1}
3. MligTC455_51897 342 7.12 Mlig455_008969

Neo: -

Age: -

 GCNT1 0.981 - - - - 0.981 - Mlig455_008969 {REF} {Length: 2267} {Pfam: Core-2/I-Branching enzyme [PF02485.23, score=142.1]} {Human: ENSG00000187210, GCNT1, glucosaminyl (N-acetyl) transferase 1, core 2, [RH, Score=191, Expect=1e-54]} {Mouse: ENSMUSG00000038843, Gcnt1, glucosaminyl (N-acetyl) transferase 1, core 2, [RH, Score=188, Expect=1e-53]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=79.7, Expect=3e-15]} {Celegans: WBGene00001626, gly-1, GLY-1; GLYcosylation related, [RH, Score=141, Expect=2e-36]} {Smed: dd_Smed_v6_6205_0_4, dd_Smed_v6_6205_0_4, [RH, Score=259, Expect=1e-81]} {RNA1509_14691} {RNA1310_16962} {RNA815_6581.1}
4. MligTC455_21820 228 4.74 Mlig455_044453

Neo: -

Age: -

 NEURL1B 0.956 - - - - 0.956 - Mlig455_044453 {REF} {Length: 793} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=55.2]; Prokaryotic RING finger family 4 [PF14447.8, score=35.4]; zinc-RING finger domain [PF14634.8, score=20.5]} {Human: ENSG00000214357, NEURL1B, neuralized E3 ubiquitin protein ligase 1B, [Score=53.5, Expect=4e-09]} {Mouse: ENSMUSG00000034413, Neurl1b, neuralized E3 ubiquitin protein ligase 1B, [Score=53.1, Expect=4e-09]} {Dmel: FBgn0035483, Mul1, Mitochondrial E3 ubiquitin protein ligase 1, [Score=48.1, Expect=1e-07]} {Celegans: WBGene00008343, C56A3.4, [RH, Score=47.8, Expect=1e-07]} {RNA1509_25337, RNA1509_34785, RNA1509_51836} {RNA1310_38387, RNA1509_25337, RNA1509_34785, RNA1509_51836} {RNA1509_25337, RNA1509_34785, RNA1509_51836, RNA815_26022}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA