M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46166

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46166 93 1.94 Mlig455_069429

Neo: -

Age: -

 Mlig455_069429 {REF} {Length: 1835} {TRANSSPLICED} {RNA1310_20251.1} {RNA815_37054}

Cumulative graph for MligTC455_46166

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.636 1.907 0.39778 1.00000
RegionR2 -0.02 1.907 0.97273 1.00000
RegionR3 -0.82 1.907 0.30255 0.84442
RegionR4 0.671 1.907 0.46331 0.79096
RegionR5 -1.191 1.907 0.11980 0.34617
RegionR6 -0.402 1.907 0.61160 1.00000
RegionR7 -0.382 1.907 0.73236 1.00000
RegionR8 0.509 1.907 0.68331 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.174 1.907 0.23946 0.96582
RegenerationR2 -1.453 1.907 0.08726 0.47425
RegenerationR3 0.024 1.907 0.98310 1.00000
RegenerationR4 -0.556 1.907 0.54100 0.88874
RegenerationR5 0.049 1.907 0.95135 1.00000
RegenerationR6 -1.177 1.907 0.24096 0.58901
RegenerationBL -0.332 1.907 0.77113 1.00000
RegenerationTP -0.945 1.907 0.46190 0.87516


Genes with expression patterns similar to MligTC455_46166

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46166 93 1.94 Mlig455_069429

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_069429 {REF} {Length: 1835} {TRANSSPLICED} {RNA1310_20251.1} {RNA815_37054}
2. MligTC455_50548 651 13.56 Mlig455_039553, Mlig455_051358

Neo: -

Age: logFC(26M/2M)=0.261

 MRI1 0.976 - - 0.976 - - -

Mlig455_039553 {REF} {Length: 2475} {TRANSSPLICED} {Pfam: Initiation factor 2 subunit family [PF01008.19, score=256.7]} {Human: ENSG00000037757, MRI1, methylthioribose-1-phosphate isomerase 1, [RH, Score=364, Expect=2e-124]} {Mouse: ENSMUSG00000004996, Mri1, methylthioribose-1-phosphate isomerase 1, [RH, Score=355, Expect=5e-121]} {Dmel: FBgn0039849, CG11334, [RH, Score=379, Expect=1e-130]} {Celegans: WBGene00007236, C01G10.9, Methylthioribose-1-phosphate isomerase, [RH, Score=268, Expect=3e-87]} {RNA1509_13437, RNA1509_22125} {RNA1310_17445.2, RNA1509_22125} {RNA1509_22125, RNA815_10627.1}

Mlig455_051358 {REF} {Length: 2101} {TRANSSPLICED} {Pfam: Initiation factor 2 subunit family [PF01008.19, score=257.4]} {Human: ENSG00000037757, MRI1, methylthioribose-1-phosphate isomerase 1, [RH, Score=367, Expect=1e-125]} {Mouse: ENSMUSG00000004996, Mri1, methylthioribose-1-phosphate isomerase 1, [RH, Score=358, Expect=4e-122]} {Dmel: FBgn0039849, CG11334, [RH, Score=380, Expect=3e-131]} {Celegans: WBGene00007236, C01G10.9, Methylthioribose-1-phosphate isomerase, [RH, Score=270, Expect=6e-88]} {RNA1509_13437} {RNA1310_17445.2, RNA1509_13437} {RNA1509_13437, RNA815_10627.1}
3. MligTC455_25271 185 3.86 Mlig455_035679

Neo: -

Age: -

 XPO7 0.956 - - - 0.956 - - Mlig455_035679 {REF} {Length: 5380} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=22.2]} {Human: ENSG00000130227, XPO7, exportin 7, [RH, Score=1230, Expect=0.0]} {Mouse: ENSMUSG00000022100, Xpo7, exportin 7, [RH, Score=1227, Expect=0.0]} {Dmel: FBgn0053180, Ranbp16, [RH, Score=1072, Expect=0.0]} {Celegans: WBGene00007952, C35A5.8, [RH, Score=781, Expect=0.0]} {Smed: dd_Smed_v6_5566_0_1, dd_Smed_v6_5566_0_1, [RH, Score=728, Expect=0.0]} {RNA1509_43046, RNA1509_6691} {RNA1310_1345.1, RNA1509_43046, RNA1509_6691} {RNA1509_43046, RNA1509_6691, RNA815_775.1}
4. MligTC455_54770 23 0.48 Mlig455_019273

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_019273 {REF} {Length: 539} {NoTransDecoderORF} {RNA1310_4504} {RNA815_59745}
5. MligTC455_40277 90 1.88 Mlig455_030086

Neo: -

Age: -

 CAB39L 0.952 - - - - 0.952 - Mlig455_030086 {REF} {Length: 3457} {TRANSSPLICED} {Pfam: Mo25-like [PF08569.13, score=374.9]} {Human: ENSG00000102547, CAB39L, calcium binding protein 39 like, [Score=291, Expect=4e-96]; ENSG00000135932, CAB39, calcium binding protein 39, [Score=290, Expect=1e-95]} {Mouse: ENSMUSG00000036707, Cab39, calcium binding protein 39, [Score=289, Expect=1e-95]; ENSMUSG00000021981, Cab39l, calcium binding protein 39-like, [Score=288, Expect=2e-95]} {Dmel: FBgn0017572, Mo25, [Score=277, Expect=6e-91]} {Celegans: WBGene00013140, mop-25.2, MO25-like protein 2, [Score=283, Expect=2e-93]} {Smed: dd_Smed_v6_3050_0_1, dd_Smed_v6_3050_0_1, [RH, Score=350, Expect=1e-119]} {RNA1509_7773} {RNA1310_21162} {RNA815_2962.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA