TomoSeq data search

Data search

Results for MligTC455_46231

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_46231

219

4.56

Mlig455_042082

Neo: -

Age: -

RNF141

Mlig455_042082 {REF} {Length: 1971} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.4]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=27.4]; Ring finger domain [PF13639.8, score=23.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.0]; zinc-RING finger domain [PF14634.8, score=21.2]; RING-type zinc-finger [PF13445.8, score=19.2]} {Human: ENSG00000110315, RNF141, ring finger protein 141, [RH, Score=118, Expect=7e-32]} {Mouse: ENSMUSG00000030788, Rnf141, ring finger protein 141, [RH, Score=117, Expect=1e-31]} {RNA1509_36892} {RNA1310_14426, RNA1509_36892} {RNA1509_36892, RNA815_5588.1}

Cumulative graph for MligTC455_46231

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.954	2.861	0.28858	0.94106
RegionR2	0.109	2.861	0.81276	1.00000
RegionR3	0.751	2.861	0.39372	0.92358
RegionR4	1.477	2.861	0.07459	0.25263
RegionR5	1.511	2.861	0.02112	0.10089
RegionR6	0.298	2.861	0.71742	1.00000
RegionR7	1.315	2.861	0.18278	0.78180
RegionR8	-0.507	2.861	0.95878	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.751	2.861	0.99991	1.00000
RegenerationR2	0.575	2.861	0.19477	0.63929
RegenerationR3	0.074	2.861	0.88638	1.00000
RegenerationR4	-0.632	2.861	0.21765	0.66527
RegenerationR5	-0.167	2.861	0.68138	0.94415
RegenerationR6	-0.063	2.861	0.91502	1.00000
RegenerationBL	-0.431	2.861	0.64428	0.98254
RegenerationTP	0.932	2.861	0.27270	0.72113

Genes with expression patterns similar to MligTC455_46231

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_46231	219	4.56	Mlig455_042082	Neo: - Age: -	RNF141	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_042082 {REF} {Length: 1971} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.4]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=27.4]; Ring finger domain [PF13639.8, score=23.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.0]; zinc-RING finger domain [PF14634.8, score=21.2]; RING-type zinc-finger [PF13445.8, score=19.2]} {Human: ENSG00000110315, RNF141, ring finger protein 141, [RH, Score=118, Expect=7e-32]} {Mouse: ENSMUSG00000030788, Rnf141, ring finger protein 141, [RH, Score=117, Expect=1e-31]} {RNA1509_36892} {RNA1310_14426, RNA1509_36892} {RNA1509_36892, RNA815_5588.1}
2.	MligTC455_24322	131	2.73	Mlig455_019412	Neo: - Age: Down-Down-Up Region-enriched R5: 2.189/0.04298	ANKMY2	1.717	-	-	0.755	-	0.962	-	Mlig455_019412 {REF} {Length: 2261} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=49.6]; Ankyrin repeats (many copies) [PF13637.8, score=37.3]; MYND finger [PF01753.20, score=32.0]; Ankyrin repeat [PF13606.8, score=31.2]; Ankyrin repeat [PF00023.32, score=29.3]; Ankyrin repeats (many copies) [PF13857.8, score=26.8]} {Human: ENSG00000106524, ANKMY2, ankyrin repeat and MYND domain containing 2, [RH, Score=254, Expect=3e-78]} {Mouse: ENSMUSG00000036188, Ankmy2, ankyrin repeat and MYND domain containing 2, [RH, Score=251, Expect=4e-77]} {Dmel: FBgn0036096, CG8003, [RH, Score=192, Expect=2e-55]} {Celegans: WBGene00000917, daf-25, Dauer abnormal formation protein 25, [RH, Score=137, Expect=1e-35]} {Smed: dd_Smed_v6_5921_0_2, dd_Smed_v6_5921_0_2, [RH, Score=231, Expect=2e-70]} {RNA1509_3934} {RNA1310_13185} {RNA815_18603}
3.	MligTC455_39178	5411	112.73	Mlig455_050748	Neo: - Age: logFC(26M/2M)=-0.309		0.975	-	-	-	0.975	-	-	Mlig455_050748 {REF} {Length: 900} {Pfam: Dpy-30 motif [PF05186.15, score=47.7]} {Dmel: FBgn0032293, Dpy-30L1, Dpy-30-like 1, [Score=46.6, Expect=1e-06]} {Celegans: WBGene00001088, dpy-30, Dosage compensation protein dpy-30, [Score=45.1, Expect=3e-06]} {Smed: dd_Smed_v6_3788_0_1, dd_Smed_v6_3788_0_1, [RH, Score=59.3, Expect=9e-11]} {RNA1509_55862} {RNA1310_5843} {RNA815_16603}
4.	MligTC455_18954	970	20.2	Mlig455_012818	Neo: - Age: Down-Up-Up		0.969	-	-	-	0.969	-	-	Mlig455_012818 {REF} {Length: 1632} {Smed: dd_Smed_v6_5259_0_1, dd_Smed_v6_5259_0_1, [RH, Score=55.5, Expect=1e-09]} {RNA1509_36783, RNA1509_40417, RNA1509_59402} {RNA1310_20651.1, RNA1509_36783, RNA1509_40417, RNA1509_59402} {RNA1509_36783, RNA1509_40417, RNA1509_59402, RNA815_9212.1}
5.	MligTC455_42863	4143	86.31	Mlig455_015957	Neo: - Age: -	CCDC65	0.965	-	-	-	0.965	-	-	Mlig455_015957 {REF} {Length: 1928} {TRANSSPLICED} {Pfam: Sperm tail [PF14772.8, score=82.2]; Sperm tail C-terminal domain [PF14775.8, score=25.0]} {Human: ENSG00000139537, CCDC65, coiled-coil domain containing 65, [RH, Score=401, Expect=3e-135]} {Mouse: ENSMUSG00000003354, Ccdc65, coiled-coil domain containing 65, [RH, Score=420, Expect=1e-142]} {Dmel: FBgn0050259, CG30259, [RH, Score=166, Expect=8e-45]} {Smed: dd_Smed_v6_6152_0_1, dd_Smed_v6_6152_0_1, [RH, Score=525, Expect=0.0]} {RNA1509_10456, RNA1509_14724, RNA1509_1709, RNA1509_21982, RNA1509_37196} {RNA1310_14593, RNA1509_10456, RNA1509_14724, RNA1509_1709, RNA1509_21982, RNA1509_37196} {RNA1509_10456, RNA1509_14724, RNA1509_1709, RNA1509_21982, RNA1509_37196, RNA815_5330}
6.	MligTC455_33008	512	10.66	Mlig455_032378, Mlig455_032404	Neo: - Age: -		0.964	-	-	-	0.964	-	-	Mlig455_032378 {REF} {Length: 955} {RNA1509_40043} {RNA1310_38774} {RNA815_34620} Mlig455_032404 {REF} {Length: 2216} {RNA1509_40043} {RNA1310_38774, RNA1509_40043} {RNA1509_40043, RNA815_34620}
7.	MligTC455_49848	1400	29.18	Mlig455_041703	Neo: - Age: logFC(26M/2M)=-0.335	IFT43	0.963	-	-	-	0.963	-	-	Mlig455_041703 {REF} {Length: 1133} {Pfam: Intraflagellar transport protein 43 [PF15305.8, score=102.4]} {Human: ENSG00000119650, IFT43, intraflagellar transport 43, [RH, Score=105, Expect=7e-28]} {Mouse: ENSMUSG00000007867, Ift43, intraflagellar transport 43, [RH, Score=110, Expect=4e-30]} {Smed: dd_Smed_v6_5237_0_1, dd_Smed_v6_5237_0_1, [RH, Score=105, Expect=7e-29]} {RNA1509_13608, RNA1509_28287, RNA1509_56181} {RNA1310_36704, RNA1509_13608, RNA1509_28287, RNA1509_56181} {RNA1509_13608, RNA1509_28287, RNA1509_56181, RNA815_17388.1}
8.	MligTC455_44223	4291	89.39	Mlig455_032144	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.192	PRDX5	0.962	-	-	-	0.962	-	-	Mlig455_032144 {REF} {Length: 1094} {TRANSSPLICED} {Pfam: Redoxin [PF08534.12, score=118.4]; AhpC/TSA family [PF00578.23, score=43.6]} {Human: ENSG00000126432, PRDX5, peroxiredoxin 5, [RH, Score=169, Expect=5e-53]} {Mouse: ENSMUSG00000024953, Prdx5, peroxiredoxin 5, [RH, Score=162, Expect=2e-50]} {Dmel: FBgn0038570, Prx5, Peroxiredoxin 5, [RH, Score=165, Expect=1e-51]} {Smed: dd_Smed_v6_1290_0_1, dd_Smed_v6_1290_0_1, [RH, Score=178, Expect=3e-57]} {RNA1509_45399, RNA1509_7087, RNA1509_8533} {RNA1310_18060.1, RNA1509_45399, RNA1509_8533} {RNA1509_45399, RNA1509_8533, RNA815_14438.1}
9.	MligTC455_48578	3984	83	Mlig455_005014, Mlig455_005057, Mlig455_005257	Neo: - Age: logFC(26M/2M)=-0.261 Region-enriched R2: 1.105/0.01299		0.957	-	-	-	0.957	-	-	Mlig455_005014 {REF} {Length: 1358} {TRANSSPLICED} {Pfam: Flagellar C1a complex subunit C1a-32 [PF14769.8, score=38.5]} {RNA1509_7743} {RNA1310_6563.1} {RNA815_25077} Mlig455_005057 {REF} {Length: 1356} {TRANSSPLICED} {Pfam: Flagellar C1a complex subunit C1a-32 [PF14769.8, score=37.2]} {Mouse: ENSMUSG00000019945, Cabcoco1, ciliary associated calcium binding coiled-coil 1, [RH, Score=82.8, Expect=1e-17]} {Smed: dd_Smed_v6_8921_0_1, dd_Smed_v6_8921_0_1, [RH, Score=103, Expect=1e-25]} {RNA1509_7743} {RNA1310_6563.1, RNA1509_7743} {RNA1509_7743, RNA815_25077} Mlig455_005257 {REF} {Length: 1352} {TRANSSPLICED} {Pfam: Flagellar C1a complex subunit C1a-32 [PF14769.8, score=37.2]} {Mouse: ENSMUSG00000019945, Cabcoco1, ciliary associated calcium binding coiled-coil 1, [RH, Score=82.8, Expect=1e-17]} {Smed: dd_Smed_v6_8921_0_1, dd_Smed_v6_8921_0_1, [RH, Score=103, Expect=1e-25]} {RNA1509_15149, RNA1509_50653, RNA1509_7743} {RNA1310_6563.1, RNA1509_15149, RNA1509_50653} {RNA1509_15149, RNA1509_50653, RNA815_25077}
10.	MligTC455_40089	1886	39.29	Mlig455_065378	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.262	C9orf135	0.955	-	-	-	0.955	-	-	Mlig455_065378 {REF} {Length: 1881} {Pfam: Domain of unknown function (DUF4572) [PF15139.8, score=148.3]} {Human: ENSG00000204711, C9orf135, chromosome 9 open reading frame 135, [RH, Score=106, Expect=8e-26]} {Mouse: ENSMUSG00000033053, 1700028P14Rik, RIKEN cDNA 1700028P14 gene, [RH, Score=85.9, Expect=9e-19]} {Smed: dd_Smed_v6_8797_0_1, dd_Smed_v6_8797_0_1, [RH, Score=123, Expect=7e-33]} {RNA1509_3475, RNA1509_34777} {RNA1310_27695.1, RNA1509_3475, RNA1509_34777} {RNA1509_3475, RNA1509_34777, RNA815_12226}
11.	MligTC455_53016	3381	70.44	Mlig455_011622, Mlig455_029159, Mlig455_041435, Mlig455_054105	Neo: - Age: Down-Up-Down Regeneration-downregulated BL: -1.439 Regeneration-depleted BL: -1.439		0.953	-	-	-	0.953	-	-	Mlig455_011622 {REF} {Length: 775} {TRANSSPLICED} {RNA1509_30383, RNA1509_35561} {RNA1310_72970.1, RNA1509_30383} {RNA1509_30383, RNA815_18757.1} Mlig455_029159 {REF} {Length: 1084} {TRANSSPLICED} {RNA1509_35561} {RNA1310_72970.1} {RNA815_18757.1} Mlig455_041435 {REF} {Length: 1152} {TRANSSPLICED} {Pfam: Glycine transporter [PF03458.15, score=19.1]} {RNA1509_35561} {RNA1310_72970.1} {RNA815_18757.1} Mlig455_054105 {REF} {Length: 1139} {Pfam: HMW1C N-terminal [PF18071.3, score=30.3]} {RNA1509_35561} {RNA1310_76980} {RNA815_18757.1}
12.	MligTC455_18481	1416	29.5	Mlig455_061762	Neo: - Age: Down-Down-Up Region-enriched R2: 1.816/0.04103	IFT88	0.95	-	-	-	0.950	-	-	Mlig455_061762 {REF} {Length: 3149} {Pfam: Tetratricopeptide repeat [PF07719.19, score=111.4]; Tetratricopeptide repeat [PF00515.30, score=99.7]; Tetratricopeptide repeat [PF13424.8, score=98.0]; Tetratricopeptide repeat [PF13181.8, score=76.4]; Tetratricopeptide repeat [PF14559.8, score=73.3]; Tetratricopeptide repeat [PF13174.8, score=71.7]; Tetratricopeptide repeat [PF13432.8, score=71.0]; Tetratricopeptide repeat [PF13428.8, score=70.9]; Tetratricopeptide repeat [PF13176.8, score=61.5]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=56.3]; TPR repeat [PF13414.8, score=50.2]; Tetratricopeptide repeat [PF13371.8, score=40.4]; Tetratricopeptide repeat [PF13374.8, score=31.9]; Tetratricopeptide repeat-like domain [PF09976.11, score=28.6]; Tetratricopeptide repeat [PF13431.8, score=22.0]; MalT-like TPR region [PF17874.3, score=21.7]} {Human: ENSG00000032742, IFT88, intraflagellar transport 88, [RH, Score=867, Expect=0.0]} {Mouse: ENSMUSG00000040040, Ift88, intraflagellar transport 88, [RH, Score=908, Expect=0.0]} {Dmel: FBgn0016919, nompB, no mechanoreceptor potential B, [RH, Score=349, Expect=1e-107]} {Celegans: WBGene00003885, osm-5, OSM-5, [RH, Score=624, Expect=0.0]} {Smed: dd_Smed_v6_5484_0_1, dd_Smed_v6_5484_0_1, [RH, Score=976, Expect=0.0]} {RNA1509_34996, RNA1509_4056} {RNA1310_1829, RNA1509_34996, RNA1509_4056} {RNA1509_34996, RNA1509_4056, RNA815_705}
13.	MligTC455_41908	263	5.48	Mlig455_048858	Neo: - Age: logFC(26M/2M)=-0.225	CADPS	0.95	-	-	-	-	0.950	-	Mlig455_048858 {REF} {Length: 4196} {TRANSSPLICED} {Pfam: MUN domain [PF06292.19, score=393.9]; PH domain [PF00169.31, score=33.8]} {Human: ENSG00000163618, CADPS, calcium dependent secretion activator, [Score=806, Expect=0.0]; ENSG00000081803, CADPS2, calcium dependent secretion activator 2, [Score=796, Expect=0.0]} {Mouse: ENSMUSG00000054423, Cadps, Ca2+-dependent secretion activator, [Score=790, Expect=0.0]; ENSMUSG00000017978, Cadps2, Ca2+-dependent activator protein for secretion 2, [Score=790, Expect=0.0]} {Dmel: FBgn0053653, Cadps, Calcium-dependent secretion activator, [Score=845, Expect=0.0]} {Celegans: WBGene00006767, unc-31, Calcium-dependent secretion activator, [Score=736, Expect=0.0]} {Smed: dd_Smed_v6_11725_0_1, dd_Smed_v6_11725_0_1, [Score=864, Expect=0.0]} {RNA1509_26708} {RNA1310_4475} {RNA815_2341}

Berezikov Lab - 2020-2021 © ERIBA