M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46686

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46686 1098 22.88 Mlig455_051813

Neo: -

Age: Down-Down-Up

 Mlig455_051813 {REF} {Length: 2522} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=43.9]; Ankyrin repeats (3 copies) [PF12796.9, score=39.1]; Ankyrin repeat [PF13606.8, score=29.4]} {RNA1509_11461, RNA1509_51366} {RNA1310_9478.1, RNA1509_51366} {RNA1509_51366, RNA815_3045}

Cumulative graph for MligTC455_46686

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.776 4.765 0.47946 1.00000
RegionR2 -0.302 4.765 0.56666 0.92766
RegionR3 0.287 4.765 0.50585 0.99691
RegionR4 0.908 4.765 0.07941 0.26360
RegionR5 -0.282 4.765 0.52381 0.88681
RegionR6 0.465 4.765 0.28719 0.87865
RegionR7 -0.221 4.765 0.68963 1.00000
RegionR8 -0.078 4.765 0.91339 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.227 4.765 0.86525 1.00000
RegenerationR2 0.137 4.765 0.77746 0.98267
RegenerationR3 0.136 4.765 0.78828 0.97841
RegenerationR4 0.19 4.765 0.71375 0.95864
RegenerationR5 0.756 4.765 0.12730 0.53166
RegenerationR6 -0.015 4.765 0.97610 1.00000
RegenerationBL -0.166 4.765 0.75540 1.00000
RegenerationTP 0.269 4.765 0.64704 0.98743


Genes with expression patterns similar to MligTC455_46686

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46686 1098 22.88 Mlig455_051813

Neo: -

Age: Down-Down-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_051813 {REF} {Length: 2522} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=43.9]; Ankyrin repeats (3 copies) [PF12796.9, score=39.1]; Ankyrin repeat [PF13606.8, score=29.4]} {RNA1509_11461, RNA1509_51366} {RNA1310_9478.1, RNA1509_51366} {RNA1509_51366, RNA815_3045}
2. MligTC455_44131 2238 46.63 Mlig455_008740, Mlig455_008756

Neo: -

Age: logFC(26M/2M)=0.231

 BPHL 0.969 - - - - - 0.969

Mlig455_008740 {REF} {Length: 1106} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF00561.22, score=74.8]; Alpha/beta hydrolase family [PF12697.9, score=61.2]; Serine aminopeptidase, S33 [PF12146.10, score=55.0]; TAP-like protein [PF08386.12, score=23.7]} {Human: ENSG00000137274, BPHL, biphenyl hydrolase like, [RH, Score=233, Expect=5e-76]} {Mouse: ENSMUSG00000038286, Bphl, biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen), [RH, Score=224, Expect=2e-72]} {Dmel: FBgn0038974, CG5377, [RH, Score=202, Expect=2e-64]} {Celegans: WBGene00019280, K01A2.5, [RH, Score=106, Expect=2e-27]} {RNA1509_36267} {RNA1310_32073} {RNA815_14961}

Mlig455_008756 {REF} {Length: 1106} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF00561.22, score=74.8]; Alpha/beta hydrolase family [PF12697.9, score=61.2]; Serine aminopeptidase, S33 [PF12146.10, score=55.0]; TAP-like protein [PF08386.12, score=23.7]} {Human: ENSG00000137274, BPHL, biphenyl hydrolase like, [RH, Score=233, Expect=5e-76]} {Mouse: ENSMUSG00000038286, Bphl, biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen), [RH, Score=224, Expect=2e-72]} {Dmel: FBgn0038974, CG5377, [RH, Score=202, Expect=2e-64]} {Celegans: WBGene00019280, K01A2.5, [RH, Score=106, Expect=2e-27]} {RNA1509_11876, RNA1509_17663, RNA1509_36267} {RNA1310_32073, RNA1509_11876, RNA1509_17663, RNA1509_36267} {RNA1509_11876, RNA1509_17663, RNA1509_36267, RNA815_14961}
3. MligTC455_43763 1548 32.26 Mlig455_009134

Neo: -

Age: -

 ETFDH 0.952 - - - - - 0.952 Mlig455_009134 {REF} {Length: 3198} {TRANSSPLICED} {Pfam: Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S [PF05187.15, score=158.2]; FAD dependent oxidoreductase [PF01266.26, score=34.3]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=32.5]; FAD binding domain [PF00890.26, score=32.1]; Thi4 family [PF01946.19, score=31.3]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=27.3]; FAD-NAD(P)-binding [PF13454.8, score=23.5]; FAD binding domain [PF01494.21, score=19.2]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=18.7]; HI0933-like protein [PF03486.16, score=18.2]} {Human: ENSG00000171503, ETFDH, electron transfer flavoprotein dehydrogenase, [RH, Score=814, Expect=0.0]} {Mouse: ENSMUSG00000027809, Etfdh, electron transferring flavoprotein, dehydrogenase, [RH, Score=829, Expect=0.0]} {Dmel: FBgn0033465, Etf-QO, Electron transfer flavoprotein-ubiquinone oxidoreductase, [RH, Score=753, Expect=0.0]} {Celegans: WBGene00002855, let-721, Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial, [RH, Score=745, Expect=0.0]} {Smed: dd_Smed_v6_3785_0_1, dd_Smed_v6_3785_0_1, [RH, Score=872, Expect=0.0]} {RNA1509_2025, RNA1509_6739} {RNA1310_8787, RNA1509_2025, RNA1509_6739} {RNA1509_2025, RNA1509_6739, RNA815_3614}
4. MligTC455_34060 623 12.99 Mlig455_032031

Neo: -

Age: -

 CYP2U1 0.951 - - - - - 0.951 Mlig455_032031 {REF} {Length: 2280} {Pfam: Cytochrome P450 [PF00067.24, score=317.2]} {Human: ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=230, Expect=2e-68]; ENSG00000138115, CYP2C8, cytochrome P450 family 2 subfamily C member 8, [Score=221, Expect=2e-65]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=246, Expect=3e-75]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=240, Expect=1e-72]; ENSMUSG00000028571, Cyp2j13, cytochrome P450, family 2, subfamily j, polypeptide 13, [Score=235, Expect=5e-71]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=222, Expect=1e-65]} {Celegans: WBGene00016860, cyp-33C9, CYtochrome P450 family, [Score=207, Expect=2e-60]} {Smed: dd_Smed_v6_2351_0_2, dd_Smed_v6_2351_0_2, [Score=253, Expect=3e-78]} {RNA1509_16425, RNA1509_32217} {RNA1310_14742, RNA1509_16425, RNA1509_32217} {RNA1509_16425, RNA1509_32217, RNA815_5450}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA