M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46920

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46920 5 0.11 Mlig455_002188

Neo: -

Age: -

 Mlig455_002188 {REF} {Length: 808} {NoTransDecoderORF} {RNA1310_113825}

Cumulative graph for MligTC455_46920

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_46920

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46920 5 0.11 Mlig455_002188

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_002188 {REF} {Length: 808} {NoTransDecoderORF} {RNA1310_113825}
2. MligTC455_12201 679 14.14 Mlig455_006927, Mlig455_017941

Neo: -

Age: -

Region-enriched R6: 3.425/0.00030

 NR1D2, RORA 0.986 - - - - 0.986 -

Mlig455_006927 {REF} {Length: 3874} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=149.5]} {Human: ENSG00000069667, RORA, RAR related orphan receptor A, [Score=101, Expect=7e-22]; ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [Score=101, Expect=9e-22]; ENSG00000132170, PPARG, peroxisome proliferator activated receptor gamma, [Score=99.4, Expect=3e-21]; ENSG00000198963, RORB, RAR related orphan receptor B, [Score=99.0, Expect=3e-21]; ENSG00000143365, RORC, RAR related orphan receptor C, [Score=97.4, Expect=1e-20]} {Mouse: ENSMUSG00000032238, Rora, RAR-related orphan receptor alpha, [Score=100, Expect=8e-22]; ENSMUSG00000000440, Pparg, peroxisome proliferator activated receptor gamma, [Score=99.4, Expect=2e-21]; ENSMUSG00000036192, Rorb, RAR-related orphan receptor beta, [Score=99.0, Expect=2e-21]; ENSMUSG00000021775, Nr1d2, nuclear receptor subfamily 1, group D, member 2, [Score=98.2, Expect=8e-21]; ENSMUSG00000024955, Esrra, estrogen related receptor, alpha, [Score=95.5, Expect=2e-20]} {Dmel: FBgn0001323, knrl, knirps-like, [RH, Score=98.2, Expect=7e-21]} {Celegans: WBGene00003622, nhr-23, Nuclear hormone receptor family member nhr-23, [Score=103, Expect=5e-23]} {Smed: dd_Smed_v6_42763_0_1, dd_Smed_v6_42763_0_1, [RH, Score=272, Expect=3e-79]} {RNA1509_21739} {RNA1310_10052} {RNA815_22856}

Mlig455_017941 {REF} {Length: 3200} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=149.4]} {Human: ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [Score=101, Expect=9e-22]; ENSG00000069667, RORA, RAR related orphan receptor A, [Score=101, Expect=6e-22]; ENSG00000132170, PPARG, peroxisome proliferator activated receptor gamma, [Score=99.4, Expect=3e-21]; ENSG00000198963, RORB, RAR related orphan receptor B, [Score=99.0, Expect=3e-21]; ENSG00000143365, RORC, RAR related orphan receptor C, [Score=97.4, Expect=1e-20]} {Mouse: ENSMUSG00000032238, Rora, RAR-related orphan receptor alpha, [Score=100, Expect=7e-22]; ENSMUSG00000036192, Rorb, RAR-related orphan receptor beta, [Score=99.0, Expect=2e-21]; ENSMUSG00000000440, Pparg, peroxisome proliferator activated receptor gamma, [Score=99.0, Expect=2e-21]; ENSMUSG00000021775, Nr1d2, nuclear receptor subfamily 1, group D, member 2, [Score=98.2, Expect=7e-21]; ENSMUSG00000024955, Esrra, estrogen related receptor, alpha, [Score=95.5, Expect=2e-20]} {Dmel: FBgn0001323, knrl, knirps-like, [RH, Score=98.2, Expect=6e-21]} {Celegans: WBGene00003622, nhr-23, Nuclear hormone receptor family member nhr-23, [Score=103, Expect=5e-23]} {Smed: dd_Smed_v6_42763_0_1, dd_Smed_v6_42763_0_1, [RH, Score=271, Expect=3e-79]} {RNA1509_21739} {RNA1310_10052, RNA1509_21739} {RNA1509_21739, RNA815_22856}
3. MligTC455_13555 95 1.97 Mlig455_019079

Neo: Int S/G2/M

Age: -

 COA7 0.974 - - - - 0.974 - Mlig455_019079 {REF} {Length: 1418} {Pfam: Sel1 repeat [PF08238.14, score=23.3]} {Human: ENSG00000162377, COA7, cytochrome c oxidase assembly factor 7 (putative), [Score=48.9, Expect=2e-06]} {Mouse: ENSMUSG00000048351, Coa7, cytochrome c oxidase assembly factor 7, [Score=46.6, Expect=1e-05]} {Dmel: FBgn0039965, CG13865, [RH, Score=66.2, Expect=2e-12]} {RNA1509_45906} {RNA1310_37650.1} {RNA815_47606}
4. MligTC455_15074 248 5.16 Mlig455_026600, Mlig455_042806

Neo: -

Age: -

Region-enriched R6: 5.209/0.00003

 B3GNT6 0.964 - - - - 0.964 -

Mlig455_026600 {REF} {Length: 1811} {Pfam: Galactosyltransferase [PF01762.23, score=127.7]} {Human: ENSG00000198488, B3GNT6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6, [Score=110, Expect=4e-26]; ENSG00000183778, B3GALT5, beta-1,3-galactosyltransferase 5, [Score=109, Expect=3e-26]} {Mouse: ENSMUSG00000074004, B3gnt6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase), [Score=108, Expect=2e-25]} {Dmel: FBgn0035558, CG11357, [Score=145, Expect=6e-39]} {Celegans: WBGene00007104, B0024.15, Hexosyltransferase, [Score=68.6, Expect=1e-12]} {Smed: dd_Smed_v6_4748_0_1, dd_Smed_v6_4748_0_1, [RH, Score=261, Expect=5e-84]} {RNA1509_8878} {RNA1310_19821, RNA1509_8878} {RNA1509_8878, RNA815_7886.1}

Mlig455_042806 {REF} {Length: 1822} {Pfam: Galactosyltransferase [PF01762.23, score=127.6]} {Human: ENSG00000198488, B3GNT6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6, [Score=110, Expect=4e-26]; ENSG00000183778, B3GALT5, beta-1,3-galactosyltransferase 5, [Score=109, Expect=2e-26]} {Mouse: ENSMUSG00000074004, B3gnt6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase), [Score=108, Expect=2e-25]} {Dmel: FBgn0035558, CG11357, [Score=145, Expect=6e-39]} {Celegans: WBGene00007104, B0024.15, Hexosyltransferase, [Score=68.9, Expect=1e-12]} {Smed: dd_Smed_v6_4748_0_1, dd_Smed_v6_4748_0_1, [RH, Score=261, Expect=4e-84]} {RNA1509_8878} {RNA1310_19821} {RNA815_7886.1}
5. MligTC455_13964 12 0.24 Mlig455_042706

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_042706 {REF} {Length: 793} {NoTransDecoderORF} {RNA1310_137946}
6. MligTC455_40262 46 0.95 Mlig455_010972

Neo: -

Age: -

 TJP1 0.957 - - - - 0.957 - Mlig455_010972 {REF} {Length: 3607} {Pfam: PDZ domain [PF00595.26, score=58.3]; PDZ domain [PF17820.3, score=35.4]; PDZ domain [PF13180.8, score=24.9]; ZU5 domain [PF00791.22, score=20.8]} {Human: ENSG00000104067, TJP1, tight junction protein 1, [Score=71.2, Expect=5e-12]; ENSG00000277401, TJP1, tight junction protein 1, [Score=71.2, Expect=5e-12]} {Mouse: ENSMUSG00000030516, Tjp1, tight junction protein 1, [Score=72.4, Expect=1e-12]} {Dmel: FBgn0032363, Dlg5, Discs large 5, [Score=78.2, Expect=2e-14]} {Celegans: WBGene00013683, zoo-1, ZO-1 (Zonula Occludens tight junctional protein) Ortholog, [Score=74.3, Expect=2e-13]} {RNA1310_34445}
7. MligTC455_29090 29 0.61 Mlig455_007617, Mlig455_063238, Mlig455_066727, Mlig455_066741

Neo: -

Age: Down-Up-Down

 0.953 - - - - 0.953 -

Mlig455_007617 {REF} {Length: 204} {NoTransDecoderORF} {RNA1310_16838} {RNA815_16228}

Mlig455_063238 {REF} {Length: 1745} {RNA1310_16838} {RNA815_16228}

Mlig455_066727 {REF} {Length: 1604} {RNA1310_16838} {RNA815_16228}

Mlig455_066741 {REF} {Length: 1298} {RNA1310_16838} {RNA815_16228}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA