M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47518

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47518 18 0.38 Mlig455_036680

Neo: -

Age: -

 Mlig455_036680 {REF} {Length: 1548} {RNA1509_25556} {RNA1310_86580} {RNA815_7048}

Cumulative graph for MligTC455_47518

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.917 0.744 1.00000 1.00000
RegionR2 1.403 0.744 0.83282 1.00000
RegionR3 -0.978 0.744 1.00000 1.00000
RegionR4 0.783 0.744 0.54108 0.86326
RegionR5 -1.188 0.744 1.00000 1.00000
RegionR6 -1.332 0.744 1.00000 1.00000
RegionR7 -0.353 0.744 1.00000 1.00000
RegionR8 0.748 0.744 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.592 0.744 1.00000 1.00000
RegenerationR2 -1.872 0.744 0.39485 0.81150
RegenerationR3 2.203 0.744 0.71536 0.95342
RegenerationR4 -1.296 0.744 0.49296 0.86583
RegenerationR5 1.488 0.744 0.58202 0.90126
RegenerationR6 1.397 0.744 0.76931 0.96156
RegenerationBL 1.936 0.744 0.79601 1.00000
RegenerationTP -1.342 0.744 1.00000 1.00000


Genes with expression patterns similar to MligTC455_47518

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47518 18 0.38 Mlig455_036680

Neo: -

Age: -

 2 - - - - 1.000 1.000 Mlig455_036680 {REF} {Length: 1548} {RNA1509_25556} {RNA1310_86580} {RNA815_7048}
2. MligTC455_05500 4 0.07 Mlig455_051714

Neo: -

Age: -

 0.996 - - - - - 0.996 Mlig455_051714 {REF} {Length: 696} {NoTransDecoderORF}
3. MligTC455_47561 35 0.73 Mlig455_040791, Mlig455_064629

Neo: -

Age: Down-Down-Up

 0.972 - - - - - 0.972

Mlig455_040791 {REF} {Length: 2496} {RNA1310_59777}

Mlig455_064629 {REF} {Length: 2520} {RNA1310_59777}
4. MligTC455_12762 3 0.06 Mlig455_024127

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_024127 {REF} {Length: 740} {NoTransDecoderORF} {RNA1310_143097}
5. MligTC455_24042 100 2.08 Mlig455_039683

Neo: -

Age: -

 TRIM56 0.954 - - - - 0.954 - Mlig455_039683 {REF} {Length: 2720} {Pfam: B-box zinc finger [PF00643.26, score=45.9]; RING-type zinc-finger [PF13445.8, score=33.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=28.3]; Ring finger domain [PF13639.8, score=23.2]; zinc-RING finger domain [PF14634.8, score=22.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.8]; Protein of unknown function (DUF3583) [PF12126.10, score=19.9]} {Human: ENSG00000169871, TRIM56, tripartite motif containing 56, [RH, Score=126, Expect=9e-30]} {Mouse: ENSMUSG00000043279, Trim56, tripartite motif-containing 56, [RH, Score=121, Expect=2e-28]} {Dmel: FBgn0026206, mei-P26, meiotic P26, [Score=105, Expect=2e-23]} {Smed: dd_Smed_v6_8395_0_1, dd_Smed_v6_8395_0_1, [RH, Score=410, Expect=5e-137]} {RNA1509_34137} {RNA1310_8779.2} {RNA815_3714}
6. MligTC455_45356 12 0.25 Mlig455_037521

Neo: -

Age: Down-Up-Up

 0.953 - - - - - 0.953 Mlig455_037521 {REF} {Length: 941} {Pfam: HYD1 signature containing ADP-ribosyltransferase [PF15633.8, score=34.8]} {RNA1509_7973} {RNA1310_51349} {RNA815_9390.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA