TomoSeq data search

Data search

Results for MligTC455_47552

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_47552	250	5.21	Mlig455_033522	Neo: - Age: -	LTN1	Mlig455_033522 {REF} {Length: 6234} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=30.7]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=20.9]; RING-H2 zinc finger domain [PF12678.9, score=20.6]; FANCL C-terminal domain [PF11793.10, score=20.3]; Zinc-ribbon, C4HC2 type [PF17120.7, score=18.6]} {Human: ENSG00000198862, LTN1, listerin E3 ubiquitin protein ligase 1, [RH, Score=240, Expect=4e-63]} {Mouse: ENSMUSG00000052299, Ltn1, listerin E3 ubiquitin protein ligase 1, [RH, Score=229, Expect=8e-60]} {Dmel: FBgn0262517, Ltn1, Listerin E3 ubiquitin protein ligase 1, [RH, Score=159, Expect=1e-38]} {Celegans: WBGene00021831, Y54E10A.11, E3 ubiquitin-protein ligase listerin, [RH, Score=164, Expect=3e-40]} {Smed: dd_Smed_v6_3937_0_1, dd_Smed_v6_3937_0_1, [RH, Score=187, Expect=2e-47]} {RNA1509_6753} {RNA1310_842} {RNA815_748}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_47552

250

5.21

Mlig455_033522

Neo: -

Age: -

LTN1

Mlig455_033522 {REF} {Length: 6234} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=30.7]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=20.9]; RING-H2 zinc finger domain [PF12678.9, score=20.6]; FANCL C-terminal domain [PF11793.10, score=20.3]; Zinc-ribbon, C4HC2 type [PF17120.7, score=18.6]} {Human: ENSG00000198862, LTN1, listerin E3 ubiquitin protein ligase 1, [RH, Score=240, Expect=4e-63]} {Mouse: ENSMUSG00000052299, Ltn1, listerin E3 ubiquitin protein ligase 1, [RH, Score=229, Expect=8e-60]} {Dmel: FBgn0262517, Ltn1, Listerin E3 ubiquitin protein ligase 1, [RH, Score=159, Expect=1e-38]} {Celegans: WBGene00021831, Y54E10A.11, E3 ubiquitin-protein ligase listerin, [RH, Score=164, Expect=3e-40]} {Smed: dd_Smed_v6_3937_0_1, dd_Smed_v6_3937_0_1, [RH, Score=187, Expect=2e-47]} {RNA1509_6753} {RNA1310_842} {RNA815_748}

Cumulative graph for MligTC455_47552

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.335	2.851	0.11678	0.70519
RegionR2	1.841	2.851	0.03778	0.22525
RegionR3	0.587	2.851	0.33484	0.87267
RegionR4	-2.261	2.851	0.00966	0.05951
RegionR5	-0.405	2.851	0.46171	0.82388
RegionR6	0.584	2.851	0.38428	0.96220
RegionR7	0.997	2.851	0.15869	0.73571
RegionR8	0.991	2.851	0.29716	0.92659

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.626	2.851	0.84324	1.00000
RegenerationR2	0.822	2.851	0.36358	0.79072
RegenerationR3	2.118	2.851	0.02105	0.26360
RegenerationR4	0.813	2.851	0.39950	0.81320
RegenerationR5	1.616	2.851	0.05384	0.37267
RegenerationR6	1.398	2.851	0.12555	0.43526
RegenerationBL	2.349	2.851	0.01241	0.11420
RegenerationTP	-1.171	2.851	0.45743	0.87265

Genes with expression patterns similar to MligTC455_47552

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_47552	250	5.21	Mlig455_033522	Neo: - Age: -	LTN1	5	1.000	1.000	-	1.000	1.000	1.000	Mlig455_033522 {REF} {Length: 6234} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=30.7]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=20.9]; RING-H2 zinc finger domain [PF12678.9, score=20.6]; FANCL C-terminal domain [PF11793.10, score=20.3]; Zinc-ribbon, C4HC2 type [PF17120.7, score=18.6]} {Human: ENSG00000198862, LTN1, listerin E3 ubiquitin protein ligase 1, [RH, Score=240, Expect=4e-63]} {Mouse: ENSMUSG00000052299, Ltn1, listerin E3 ubiquitin protein ligase 1, [RH, Score=229, Expect=8e-60]} {Dmel: FBgn0262517, Ltn1, Listerin E3 ubiquitin protein ligase 1, [RH, Score=159, Expect=1e-38]} {Celegans: WBGene00021831, Y54E10A.11, E3 ubiquitin-protein ligase listerin, [RH, Score=164, Expect=3e-40]} {Smed: dd_Smed_v6_3937_0_1, dd_Smed_v6_3937_0_1, [RH, Score=187, Expect=2e-47]} {RNA1509_6753} {RNA1310_842} {RNA815_748}
2.	MligTC455_43579	278	5.8	Mlig455_063153	Neo: - Age: -	LANCL3	2.494	0.729	-	-	0.813	-	0.952	Mlig455_063153 {REF} {Length: 2520} {TRANSSPLICED} {Pfam: Lanthionine synthetase C-like protein [PF05147.15, score=156.2]} {Human: ENSG00000147036, LANCL3, LanC like 3, [RH, Score=225, Expect=1e-68]} {Mouse: ENSMUSG00000047344, Lancl3, LanC lantibiotic synthetase component C-like 3 (bacterial), [RH, Score=220, Expect=6e-67]} {Dmel: FBgn0027498, CG2061, [RH, Score=200, Expect=3e-59]} {Smed: dd_Smed_v6_10666_0_2, dd_Smed_v6_10666_0_2, [Score=155, Expect=7e-43]} {RNA1509_25336, RNA1509_27502} {RNA1310_17817.2, RNA1509_25336, RNA1509_27502} {RNA1509_25336, RNA1509_27502, RNA815_8500}
3.	MligTC455_28289	662	13.79	Mlig455_031490	Neo: - Age: -		0.967	-	-	-	-	-	0.967	Mlig455_031490 {REF} {Length: 2077} {NoTransDecoderORF} {RNA1509_47220} {RNA1310_17510.1} {RNA815_9674}
4.	MligTC455_43298	1464	30.5	Mlig455_038207, Mlig455_038281	Neo: Int S/G2/M Age: Down-Up-Down	C2orf69	0.95	-	-	-	-	0.950	-	Mlig455_038207 {REF} {Length: 1663} {Pfam: Uncharacterised protein family UPF0565 [PF10561.11, score=197.8]} {Human: ENSG00000178074, C2orf69, chromosome 2 open reading frame 69, [RH, Score=143, Expect=3e-39]} {Mouse: ENSMUSG00000038323, 1700066M21Rik, RIKEN cDNA 1700066M21 gene, [RH, Score=141, Expect=9e-39]} {Dmel: FBgn0051122, CG31122, [RH, Score=97.1, Expect=5e-22]} {Smed: dd_Smed_v6_12694_0_1, dd_Smed_v6_12694_0_1, [RH, Score=121, Expect=2e-32]} {RNA1509_30036} {RNA1310_25143.1} {RNA815_11597} Mlig455_038281 {REF} {Length: 1450} {Pfam: Uncharacterised protein family UPF0565 [PF10561.11, score=197.8]} {Human: ENSG00000178074, C2orf69, chromosome 2 open reading frame 69, [RH, Score=142, Expect=6e-39]} {Mouse: ENSMUSG00000038323, 1700066M21Rik, RIKEN cDNA 1700066M21 gene, [RH, Score=143, Expect=2e-39]} {Dmel: FBgn0051122, CG31122, [RH, Score=96.7, Expect=7e-22]} {Smed: dd_Smed_v6_12694_0_1, dd_Smed_v6_12694_0_1, [RH, Score=122, Expect=7e-33]} {RNA1509_30036} {RNA1310_25143.1, RNA1509_30036} {RNA1509_30036, RNA815_11597}