M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47556

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47556 246 5.13 Mlig455_025685

Neo: Irradiation

Age: -

 Mlig455_025685 {REF} {Length: 2903} {TRANSSPLICED} {RNA1509_38009} {RNA1310_12488} {RNA815_19057}

Cumulative graph for MligTC455_47556

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.524 2.873 0.71172 1.00000
RegionR2 -0.76 2.873 0.26492 0.64712
RegionR3 -1.333 2.873 0.02819 0.28732
RegionR4 0.9 2.873 0.11870 0.34470
RegionR5 0.965 2.873 0.02694 0.11991
RegionR6 0.542 2.873 0.29166 0.88322
RegionR7 -0.191 2.873 0.80450 1.00000
RegionR8 -0.648 2.873 0.52451 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.205 2.873 0.91389 1.00000
RegenerationR2 0.913 2.873 0.09919 0.49866
RegenerationR3 1.156 2.873 0.08302 0.47145
RegenerationR4 -0.462 2.873 0.42219 0.82647
RegenerationR5 0.075 2.873 0.87901 1.00000
RegenerationR6 -0.057 2.873 0.92221 1.00000
RegenerationBL 0.231 2.873 0.77304 1.00000
RegenerationTP 0.815 2.873 0.33590 0.78002


Genes with expression patterns similar to MligTC455_47556

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47556 246 5.13 Mlig455_025685

Neo: Irradiation

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_025685 {REF} {Length: 2903} {TRANSSPLICED} {RNA1509_38009} {RNA1310_12488} {RNA815_19057}
2. MligTC455_42662 405 8.44 Mlig455_046348

Neo: -

Age: -

Region-enriched R5: 1.217/0.00287

 1.804 - - - 0.965 - 0.839 Mlig455_046348 {REF} {Length: 1982} {TRANSSPLICED} {Smed: dd_Smed_v6_4953_0_1, dd_Smed_v6_4953_0_1, [Score=48.5, Expect=1e-07]} {RNA1509_20451} {RNA1310_21505, RNA1509_20451} {RNA1509_20451, RNA815_14868}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA