TomoSeq data search

Data search

Results for MligTC455_47571

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_47571	199	4.15	Mlig455_007938, Mlig455_008040	Neo: - Age: Up-Down-Up	IRX4	Mlig455_007938 {REF} {Length: 2406} {Pfam: Homeodomain [PF00046.31, score=46.5]; Homeobox KN domain [PF05920.13, score=45.4]; Homeodomain leucine-zipper encoding, Homez [PF11569.10, score=21.5]} {Human: ENSG00000113430, IRX4, iroquois homeobox 4, [Score=56.2, Expect=4e-08]; ENSG00000159387, IRX6, iroquois homeobox 6, [Score=56.2, Expect=5e-08]; ENSG00000177508, IRX3, iroquois homeobox 3, [Score=54.3, Expect=2e-07]; ENSG00000170561, IRX2, iroquois homeobox 2, [Score=53.9, Expect=2e-07]; ENSG00000170549, IRX1, iroquois homeobox 1, [Score=53.5, Expect=3e-07]; ENSG00000176842, IRX5, iroquois homeobox 5, [Score=53.5, Expect=3e-07]} {Mouse: ENSMUSG00000021604, Irx4, Iroquois homeobox 4, [Score=57.4, Expect=1e-08]; ENSMUSG00000031734, Irx3, Iroquois related homeobox 3, [Score=55.1, Expect=8e-08]; ENSMUSG00000031738, Irx6, Iroquois homeobox 6, [Score=55.1, Expect=6e-08]} {Dmel: FBgn0014343, mirr, mirror, [Score=57.0, Expect=1e-08]} {Celegans: WBGene00017690, ceh-60, C. Elegans Homeobox, [Score=60.1, Expect=8e-10]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [Score=87.4, Expect=5e-19]} {RNA1310_18740} {RNA815_21891} Mlig455_008040 {REF} {Length: 2404} {Pfam: Homeodomain [PF00046.31, score=46.5]; Homeobox KN domain [PF05920.13, score=45.4]; Homeodomain leucine-zipper encoding, Homez [PF11569.10, score=21.5]} {Human: ENSG00000113430, IRX4, iroquois homeobox 4, [Score=56.2, Expect=4e-08]; ENSG00000159387, IRX6, iroquois homeobox 6, [Score=56.2, Expect=5e-08]; ENSG00000177508, IRX3, iroquois homeobox 3, [Score=54.3, Expect=2e-07]; ENSG00000170561, IRX2, iroquois homeobox 2, [Score=53.9, Expect=2e-07]; ENSG00000170549, IRX1, iroquois homeobox 1, [Score=53.5, Expect=3e-07]; ENSG00000176842, IRX5, iroquois homeobox 5, [Score=53.5, Expect=3e-07]} {Mouse: ENSMUSG00000021604, Irx4, Iroquois homeobox 4, [Score=57.4, Expect=1e-08]; ENSMUSG00000031734, Irx3, Iroquois related homeobox 3, [Score=55.1, Expect=8e-08]; ENSMUSG00000031738, Irx6, Iroquois homeobox 6, [Score=55.1, Expect=6e-08]} {Dmel: FBgn0014343, mirr, mirror, [Score=57.0, Expect=1e-08]} {Celegans: WBGene00017690, ceh-60, C. Elegans Homeobox, [Score=60.1, Expect=8e-10]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [Score=87.4, Expect=5e-19]} {RNA1310_18740} {RNA815_21891}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_47571

199

4.15

Mlig455_007938, Mlig455_008040

Neo: -

Age: Up-Down-Up

IRX4

Mlig455_007938 {REF} {Length: 2406} {Pfam: Homeodomain [PF00046.31, score=46.5]; Homeobox KN domain [PF05920.13, score=45.4]; Homeodomain leucine-zipper encoding, Homez [PF11569.10, score=21.5]} {Human: ENSG00000113430, IRX4, iroquois homeobox 4, [Score=56.2, Expect=4e-08]; ENSG00000159387, IRX6, iroquois homeobox 6, [Score=56.2, Expect=5e-08]; ENSG00000177508, IRX3, iroquois homeobox 3, [Score=54.3, Expect=2e-07]; ENSG00000170561, IRX2, iroquois homeobox 2, [Score=53.9, Expect=2e-07]; ENSG00000170549, IRX1, iroquois homeobox 1, [Score=53.5, Expect=3e-07]; ENSG00000176842, IRX5, iroquois homeobox 5, [Score=53.5, Expect=3e-07]} {Mouse: ENSMUSG00000021604, Irx4, Iroquois homeobox 4, [Score=57.4, Expect=1e-08]; ENSMUSG00000031734, Irx3, Iroquois related homeobox 3, [Score=55.1, Expect=8e-08]; ENSMUSG00000031738, Irx6, Iroquois homeobox 6, [Score=55.1, Expect=6e-08]} {Dmel: FBgn0014343, mirr, mirror, [Score=57.0, Expect=1e-08]} {Celegans: WBGene00017690, ceh-60, C. Elegans Homeobox, [Score=60.1, Expect=8e-10]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [Score=87.4, Expect=5e-19]} {RNA1310_18740} {RNA815_21891}

Mlig455_008040 {REF} {Length: 2404} {Pfam: Homeodomain [PF00046.31, score=46.5]; Homeobox KN domain [PF05920.13, score=45.4]; Homeodomain leucine-zipper encoding, Homez [PF11569.10, score=21.5]} {Human: ENSG00000113430, IRX4, iroquois homeobox 4, [Score=56.2, Expect=4e-08]; ENSG00000159387, IRX6, iroquois homeobox 6, [Score=56.2, Expect=5e-08]; ENSG00000177508, IRX3, iroquois homeobox 3, [Score=54.3, Expect=2e-07]; ENSG00000170561, IRX2, iroquois homeobox 2, [Score=53.9, Expect=2e-07]; ENSG00000170549, IRX1, iroquois homeobox 1, [Score=53.5, Expect=3e-07]; ENSG00000176842, IRX5, iroquois homeobox 5, [Score=53.5, Expect=3e-07]} {Mouse: ENSMUSG00000021604, Irx4, Iroquois homeobox 4, [Score=57.4, Expect=1e-08]; ENSMUSG00000031734, Irx3, Iroquois related homeobox 3, [Score=55.1, Expect=8e-08]; ENSMUSG00000031738, Irx6, Iroquois homeobox 6, [Score=55.1, Expect=6e-08]} {Dmel: FBgn0014343, mirr, mirror, [Score=57.0, Expect=1e-08]} {Celegans: WBGene00017690, ceh-60, C. Elegans Homeobox, [Score=60.1, Expect=8e-10]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [Score=87.4, Expect=5e-19]} {RNA1310_18740} {RNA815_21891}

Cumulative graph for MligTC455_47571

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-4.277	2.764	0.99968	1.00000
RegionR2	0.732	2.764	0.54201	0.90959
RegionR3	0.922	2.764	0.43694	0.95400
RegionR4	3.063	2.764	0.02049	0.10396
RegionR5	1.906	2.764	0.09866	0.30229
RegionR6	1.445	2.764	0.25316	0.83885
RegionR7	0.682	2.764	0.58175	1.00000
RegionR8	-4.473	2.764	0.99982	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.352	2.764	1.00000	1.00000
RegenerationR2	0.956	2.764	0.32791	0.76567
RegenerationR3	0.973	2.764	0.39123	0.79682
RegenerationR4	0.004	2.764	0.99478	1.00000
RegenerationR5	0.572	2.764	0.56224	0.89272
RegenerationR6	1.983	2.764	0.04753	0.27282
RegenerationBL	1.619	2.764	0.33634	0.70297
RegenerationTP	4.148	2.764	0.02327	0.25877

Genes with expression patterns similar to MligTC455_47571

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_47571	199	4.15	Mlig455_007938, Mlig455_008040	Neo: - Age: Up-Down-Up	IRX4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_007938 {REF} {Length: 2406} {Pfam: Homeodomain [PF00046.31, score=46.5]; Homeobox KN domain [PF05920.13, score=45.4]; Homeodomain leucine-zipper encoding, Homez [PF11569.10, score=21.5]} {Human: ENSG00000113430, IRX4, iroquois homeobox 4, [Score=56.2, Expect=4e-08]; ENSG00000159387, IRX6, iroquois homeobox 6, [Score=56.2, Expect=5e-08]; ENSG00000177508, IRX3, iroquois homeobox 3, [Score=54.3, Expect=2e-07]; ENSG00000170561, IRX2, iroquois homeobox 2, [Score=53.9, Expect=2e-07]; ENSG00000170549, IRX1, iroquois homeobox 1, [Score=53.5, Expect=3e-07]; ENSG00000176842, IRX5, iroquois homeobox 5, [Score=53.5, Expect=3e-07]} {Mouse: ENSMUSG00000021604, Irx4, Iroquois homeobox 4, [Score=57.4, Expect=1e-08]; ENSMUSG00000031734, Irx3, Iroquois related homeobox 3, [Score=55.1, Expect=8e-08]; ENSMUSG00000031738, Irx6, Iroquois homeobox 6, [Score=55.1, Expect=6e-08]} {Dmel: FBgn0014343, mirr, mirror, [Score=57.0, Expect=1e-08]} {Celegans: WBGene00017690, ceh-60, C. Elegans Homeobox, [Score=60.1, Expect=8e-10]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [Score=87.4, Expect=5e-19]} {RNA1310_18740} {RNA815_21891} Mlig455_008040 {REF} {Length: 2404} {Pfam: Homeodomain [PF00046.31, score=46.5]; Homeobox KN domain [PF05920.13, score=45.4]; Homeodomain leucine-zipper encoding, Homez [PF11569.10, score=21.5]} {Human: ENSG00000113430, IRX4, iroquois homeobox 4, [Score=56.2, Expect=4e-08]; ENSG00000159387, IRX6, iroquois homeobox 6, [Score=56.2, Expect=5e-08]; ENSG00000177508, IRX3, iroquois homeobox 3, [Score=54.3, Expect=2e-07]; ENSG00000170561, IRX2, iroquois homeobox 2, [Score=53.9, Expect=2e-07]; ENSG00000170549, IRX1, iroquois homeobox 1, [Score=53.5, Expect=3e-07]; ENSG00000176842, IRX5, iroquois homeobox 5, [Score=53.5, Expect=3e-07]} {Mouse: ENSMUSG00000021604, Irx4, Iroquois homeobox 4, [Score=57.4, Expect=1e-08]; ENSMUSG00000031734, Irx3, Iroquois related homeobox 3, [Score=55.1, Expect=8e-08]; ENSMUSG00000031738, Irx6, Iroquois homeobox 6, [Score=55.1, Expect=6e-08]} {Dmel: FBgn0014343, mirr, mirror, [Score=57.0, Expect=1e-08]} {Celegans: WBGene00017690, ceh-60, C. Elegans Homeobox, [Score=60.1, Expect=8e-10]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [Score=87.4, Expect=5e-19]} {RNA1310_18740} {RNA815_21891}
2.	MligTC455_13797	16	0.33	Mlig455_032687	Neo: - Age: - Region-enriched R4: 5.327/0.01197		0.958	-	-	0.958	-	-	-	Mlig455_032687 {REF} {Length: 629} {NoTransDecoderORF} {RNA1310_93307.2}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts