M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47931

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47931 120 2.49 Mlig455_031673

Neo: -

Age: Down-Up-Down

 Mlig455_031673 {REF} {Length: 3367} {RNA1310_43824.1} {RNA815_20994}

Cumulative graph for MligTC455_47931

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.774 1.898 0.18023 0.80907
RegionR2 0.406 1.898 0.69324 1.00000
RegionR3 1.551 1.898 0.06766 0.45936
RegionR4 1.136 1.898 0.27299 0.57929
RegionR5 0.555 1.898 0.57692 0.93546
RegionR6 0.266 1.898 0.75846 1.00000
RegionR7 0.936 1.898 0.43917 1.00000
RegionR8 0.925 1.898 0.49774 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.69 1.898 0.24203 0.96582
RegenerationR2 -1.018 1.898 0.17122 0.61029
RegenerationR3 -0.208 1.898 0.75089 0.96501
RegenerationR4 -0.406 1.898 0.58389 0.90656
RegenerationR5 -0.105 1.898 0.88379 1.00000
RegenerationR6 0.793 1.898 0.33151 0.67768
RegenerationBL -0.837 1.898 0.44633 0.81352
RegenerationTP -1.041 1.898 0.36303 0.80279


Genes with expression patterns similar to MligTC455_47931

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47931 120 2.49 Mlig455_031673

Neo: -

Age: Down-Up-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_031673 {REF} {Length: 3367} {RNA1310_43824.1} {RNA815_20994}
2. MligTC455_21779 274 5.71 Mlig455_027616

Neo: -

Age: Down-Up-Up

 0.981 - - 0.981 - - - Mlig455_027616 {REF} {Length: 1003} {Pfam: WSC domain [PF01822.21, score=44.2]; PAN domain [PF00024.28, score=18.6]} {RNA1310_34968.1} {RNA815_9084.1}
3. MligTC455_42455 161 3.35 Mlig455_005868, Mlig455_018891

Neo: -

Age: Up-Down-Up

 NYNRIN 0.976 - - - - 0.976 -

Mlig455_005868 {REF} {Length: 4106} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.0]; Integrase zinc binding domain [PF17921.3, score=52.8]; Integrase core domain [PF00665.28, score=45.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=34.5]; Aspartyl protease [PF13650.8, score=21.5]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=72.0, Expect=8e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=68.9, Expect=4e-11]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=262, Expect=1e-72]} {RNA1509_29592} {RNA1310_10223} {RNA815_18935}

Mlig455_018891 {REF} {Length: 793} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.0]; Integrase zinc binding domain [PF17921.3, score=52.8]; Integrase core domain [PF00665.28, score=45.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=34.5]; Aspartyl protease [PF13650.8, score=21.5]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=72.0, Expect=8e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=68.9, Expect=4e-11]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=262, Expect=1e-72]} {RNA1509_29592} {RNA1310_10223} {RNA815_25405.1}
4. MligTC455_24405 48 0.99 Mlig455_027683

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.672

 0.972 - - - - 0.972 - Mlig455_027683 {REF} {Length: 2258} {RNA1310_62452} {RNA815_35919}
5. MligTC455_40433 361 7.52 Mlig455_031964, Mlig455_032014, Mlig455_032021

Neo: -

Age: Down-Up-Up

Region-enriched R3: 2.499/0.01658

 0.967 - - - - 0.967 -

Mlig455_031964 {REF} {Length: 903} {NoTransDecoderORF} {RNA1310_46854.1} {RNA815_24444.1}

Mlig455_032014 {REF} {Length: 867} {RNA1310_46854.1} {RNA815_24444.2}

Mlig455_032021 {REF} {Length: 1020} {RNA1310_46854.1} {RNA815_24444.2}
6. MligTC455_37577 942 19.63 Mlig455_032156, Mlig455_032162, Mlig455_067630

Neo: -

Age: Down-Up-Up

Region-enriched R4: 2.122/0.04027

 0.965 - - - - 0.965 -

Mlig455_032156 {REF} {Length: 1459} {RNA1310_42557} {RNA815_22443}

Mlig455_032162 {REF} {Length: 1492} {RNA1310_8269} {RNA815_22443}

Mlig455_067630 {REF} {Length: 960} {RNA1310_42557} {RNA815_22443}
7. MligTC455_44182 5080 105.83 Mlig455_052125, Mlig455_054123

Neo: -

Age: -

Regeneration-downregulated BL: -1.159

Regeneration-depleted BL: -1.159

 RAB5B 0.965 - - - - 0.965 -

Mlig455_052125 {REF} {Length: 3077} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=199.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=120.1]; ADP-ribosylation factor family [PF00025.23, score=49.2]; 50S ribosome-binding GTPase [PF01926.25, score=25.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=22.2]; RsgA GTPase [PF03193.18, score=22.0]} {Human: ENSG00000111540, RAB5B, RAB5B, member RAS oncogene family, [RH, Score=276, Expect=2e-94]; ENSG00000108774, RAB5C, RAB5C, member RAS oncogene family, [RH, Score=274, Expect=3e-93]; ENSG00000144566, RAB5A, RAB5A, member RAS oncogene family, [RH, Score=272, Expect=4e-93]} {Mouse: ENSMUSG00000000711, Rab5b, RAB5B, member RAS oncogene family, [RH, Score=276, Expect=1e-94]; ENSMUSG00000019173, Rab5c, RAB5C, member RAS oncogene family, [RH, Score=273, Expect=2e-93]; ENSMUSG00000017831, Rab5a, RAB5A, member RAS oncogene family, [RH, Score=272, Expect=3e-93]} {Dmel: FBgn0014010, Rab5, [RH, Score=271, Expect=5e-93]} {Celegans: WBGene00004268, rab-5, RAB family, [RH, Score=265, Expect=7e-91]} {Smed: dd_Smed_v6_796_0_1, dd_Smed_v6_796_0_1, [RH, Score=276, Expect=3e-95]} {RNA1509_11276, RNA1509_29926, RNA1509_4956} {RNA1310_20168.2, RNA1509_11276, RNA1509_29926, RNA1509_4956} {RNA1509_11276, RNA1509_29926, RNA1509_4956, RNA815_13866}

Mlig455_054123 {REF} {Length: 2395} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=199.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=120.1]; ADP-ribosylation factor family [PF00025.23, score=49.2]; 50S ribosome-binding GTPase [PF01926.25, score=25.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=22.2]; RsgA GTPase [PF03193.18, score=22.0]} {Human: ENSG00000111540, RAB5B, RAB5B, member RAS oncogene family, [RH, Score=276, Expect=2e-94]; ENSG00000108774, RAB5C, RAB5C, member RAS oncogene family, [RH, Score=274, Expect=3e-93]; ENSG00000144566, RAB5A, RAB5A, member RAS oncogene family, [RH, Score=272, Expect=4e-93]} {Mouse: ENSMUSG00000000711, Rab5b, RAB5B, member RAS oncogene family, [RH, Score=276, Expect=1e-94]; ENSMUSG00000019173, Rab5c, RAB5C, member RAS oncogene family, [RH, Score=273, Expect=2e-93]; ENSMUSG00000017831, Rab5a, RAB5A, member RAS oncogene family, [RH, Score=272, Expect=3e-93]} {Dmel: FBgn0014010, Rab5, [RH, Score=271, Expect=5e-93]} {Celegans: WBGene00004268, rab-5, RAB family, [RH, Score=265, Expect=7e-91]} {Smed: dd_Smed_v6_796_0_1, dd_Smed_v6_796_0_1, [RH, Score=276, Expect=3e-95]} {RNA1509_15436, RNA1509_26235, RNA1509_38165, RNA1509_4956} {RNA1310_20168.2, RNA1509_15436, RNA1509_26235, RNA1509_38165} {RNA1509_15436, RNA1509_26235, RNA1509_38165, RNA815_13866}
8. MligTC455_14051 85 1.78 Mlig455_020893

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_020893 {REF} {Length: 1633} {TRANSSPLICED} {RNA1509_24218} {RNA1310_25312.2} {RNA815_12390}
9. MligTC455_42690 55 1.14 Mlig455_062132

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_062132 {REF} {Length: 4673} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=41.8]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=23.1]} {Smed: dd_Smed_v6_62893_0_1, dd_Smed_v6_62893_0_1, [RH, Score=47.8, Expect=3e-07]} {RNA1509_31503} {RNA1310_63439}
10. MligTC455_45036 158 3.3 Mlig455_064869

Neo: -

Age: Up-Down-Down

 LMTK3 0.961 - - - - 0.961 - Mlig455_064869 {REF} {Length: 5984} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=104.2]; Protein kinase domain [PF00069.27, score=62.5]} {Human: ENSG00000142235, LMTK3, lemur tyrosine kinase 3, [Score=127, Expect=2e-30]} {Mouse: ENSMUSG00000062044, Lmtk3, lemur tyrosine kinase 3, [Score=129, Expect=3e-31]} {Dmel: FBgn0264959, Src42A, Src oncogene at 42A, [Score=99.8, Expect=8e-22]} {Celegans: WBGene00002195, kin-9, [Score=83.6, Expect=6e-17]} {Smed: dd_Smed_v6_9416_0_2, dd_Smed_v6_9416_0_2, [Score=89.7, Expect=4e-19]} {RNA1310_24544.1} {RNA815_58910}
11. MligTC455_50012 432 9 Mlig455_040480

Neo: -

Age: Up-Down-Up

Region-enriched R7: 3.410/0.00000

 SLC17A6 0.956 - - - - 0.956 - Mlig455_040480 {REF} {Length: 2278} {Pfam: Major Facilitator Superfamily [PF07690.18, score=169.6]; Sugar (and other) transporter [PF00083.26, score=35.5]} {Human: ENSG00000091664, SLC17A6, solute carrier family 17 member 6, [Score=358, Expect=5e-117]; ENSG00000104888, SLC17A7, solute carrier family 17 member 7, [Score=346, Expect=2e-112]} {Mouse: ENSMUSG00000030500, Slc17a6, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6, [Score=359, Expect=2e-117]; ENSMUSG00000070570, Slc17a7, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7, [Score=347, Expect=7e-113]} {Dmel: FBgn0031424, VGlut, Vesicular glutamate transporter, [Score=289, Expect=4e-90]} {Celegans: WBGene00001135, eat-4, Probable vesicular glutamate transporter eat-4, [Score=290, Expect=3e-91]} {Smed: dd_Smed_v6_13219_0_1, dd_Smed_v6_13219_0_1, [RH, Score=488, Expect=2e-169]} {RNA1509_13439} {RNA1310_10872, RNA1509_13439} {RNA1509_13439, RNA815_3820.1}
12. MligTC455_16114 413 8.61 Mlig455_012342

Neo: -

Age: logFC(26M/2M)=-0.317

Region-enriched R4: 2.459/0.03332

 0.954 - - - - 0.954 - Mlig455_012342 {REF} {Length: 2768} {RNA1509_7454} {RNA1310_12039.1, RNA1509_7454} {RNA1509_7454, RNA815_4813.1}
13. MligTC455_45215 353 7.36 Mlig455_018358

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.612

 SRC 0.954 - - - - 0.954 - Mlig455_018358 {REF} {Length: 4483} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=315.0]; Protein kinase domain [PF00069.27, score=159.7]; SH2 domain [PF00017.26, score=78.3]; SH3 domain [PF00018.30, score=38.7]; Variant SH3 domain [PF14604.8, score=33.8]; Haspin like kinase domain [PF12330.10, score=23.3]; ABC1 atypical kinase-like domain [PF03109.18, score=20.6]; Variant SH3 domain [PF07653.19, score=19.3]} {Human: ENSG00000197122, SRC, SRC proto-oncogene, non-receptor tyrosine kinase, [RH, Score=474, Expect=3e-162]} {Mouse: ENSMUSG00000027646, Src, Rous sarcoma oncogene, [RH, Score=473, Expect=8e-162]} {Dmel: FBgn0264959, Src42A, Src oncogene at 42A, [Score=479, Expect=1e-164]} {Celegans: WBGene00005077, src-1, Tyrosine protein-kinase src-1, [RH, Score=464, Expect=9e-159]} {Smed: dd_Smed_v6_6272_0_1, dd_Smed_v6_6272_0_1, [RH, Score=537, Expect=0.0]} {RNA1509_8558} {RNA1310_4765} {RNA815_99}
14. MligTC455_21058 197 4.11 Mlig455_012541

Neo: Int S/G2/M

Age: -

 PPAT 0.953 - - - - 0.953 - Mlig455_012541 {REF} {Length: 5957} {TRANSSPLICED} {Pfam: Glutamine amidotransferase domain [PF13522.8, score=52.7]; Glutamine amidotransferase domain [PF13537.8, score=48.5]; Ring finger domain [PF13639.8, score=39.7]; 3' exoribonuclease family, domain 2 [PF03725.17, score=32.3]; 3' exoribonuclease family, domain 1 [PF01138.23, score=31.9]; RING-H2 zinc finger domain [PF12678.9, score=26.5]; Phosphoribosyl transferase domain [PF00156.29, score=26.4]; RING-type zinc-finger [PF13445.8, score=25.8]; zinc-RING finger domain [PF14634.8, score=24.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.6]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=22.2]; Glutamine amidotransferases class-II [PF13230.8, score=20.4]; Domain of unknown function (DUF4620) [PF15399.8, score=20.4]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.2]} {Human: ENSG00000128059, PPAT, phosphoribosyl pyrophosphate amidotransferase, [RH, Score=530, Expect=3e-173]} {Mouse: ENSMUSG00000029246, Ppat, phosphoribosyl pyrophosphate amidotransferase, [RH, Score=529, Expect=3e-173]} {Dmel: FBgn0041194, Prat2, Phosphoribosylamidotransferase 2, [RH, Score=505, Expect=5e-164]} {Celegans: WBGene00011407, ppat-1, Amidophosphoribosyltransferase, [RH, Score=399, Expect=2e-125]} {Smed: dd_Smed_v6_10667_0_1, dd_Smed_v6_10667_0_1, [RH, Score=512, Expect=2e-167]} {RNA1509_41149} {RNA1310_4226.1} {RNA815_5739}
15. MligTC455_30485 697 14.52 Mlig455_050682, Mlig455_053916

Neo: -

Age: -

 GALC 0.952 - - - - 0.952 -

Mlig455_050682 {REF} {Length: 3558} {Pfam: Glycosyl hydrolase family 59 [PF02057.17, score=327.8]; Glycosyl hydrolase family 59 central domain [PF17387.4, score=132.3]} {Human: ENSG00000054983, GALC, galactosylceramidase, [Score=530, Expect=5e-180]} {Mouse: ENSMUSG00000021003, Galc, galactosylceramidase, [Score=501, Expect=3e-169]} {Celegans: WBGene00016207, C29E4.10, Putative galactocerebrosidase, [Score=285, Expect=1e-86]} {Smed: dd_Smed_v6_2699_0_1, dd_Smed_v6_2699_0_1, [Score=546, Expect=0.0]} {RNA1509_20503} {RNA1310_5601} {RNA815_1400}

Mlig455_053916 {REF} {Length: 1175} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=23.5]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=20.2]} {Celegans: WBGene00008885, F16C3.1, [Score=53.5, Expect=1e-07]} {Smed: dd_Smed_v6_26560_0_2, dd_Smed_v6_26560_0_2, [Score=100, Expect=1e-23]}
16. MligTC455_44666 192 4.01 Mlig455_008874, Mlig455_008975

Neo: -

Age: -

 TECPR2 0.952 - - - - 0.952 -

Mlig455_008874 {REF} {Length: 6602} {TRANSSPLICED} {Human: ENSG00000196663, TECPR2, tectonin beta-propeller repeat containing 2, [Score=75.1, Expect=1e-12]} {Mouse: ENSMUSG00000021275, Tecpr2, tectonin beta-propeller repeat containing 2, [Score=75.1, Expect=8e-13]} {Dmel: FBgn0033177, CG11141, [RH, Score=58.2, Expect=7e-08]} {Smed: dd_Smed_v6_1875_0_1, dd_Smed_v6_1875_0_1, [Score=62.4, Expect=6e-10]} {RNA1509_54506} {RNA1310_26253} {RNA815_56496}

Mlig455_008975 {REF} {Length: 6916} {Human: ENSG00000196663, TECPR2, tectonin beta-propeller repeat containing 2, [Score=70.9, Expect=2e-11]} {Mouse: ENSMUSG00000021275, Tecpr2, tectonin beta-propeller repeat containing 2, [Score=73.2, Expect=3e-12]} {Dmel: FBgn0033177, CG11141, [RH, Score=55.8, Expect=3e-07]} {Smed: dd_Smed_v6_1875_0_1, dd_Smed_v6_1875_0_1, [RH, Score=71.2, Expect=8e-13]} {RNA1509_54506} {RNA1310_26253} {RNA815_56496}
17. MligTC455_53511 108 2.25 Mlig455_021824

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_021824 {REF} {Length: 454} {NoTransDecoderORF} {RNA1310_89027} {RNA815_46888}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA