M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47932

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47932 12050 251.05 Mlig455_037352

Neo: -

Age: logFC(26M/2M)=0.211

 ASS1 Mlig455_037352 {REF} {Length: 2840} {Pfam: Arginosuccinate synthase [PF00764.21, score=524.0]; Queuosine biosynthesis protein QueC [PF06508.15, score=21.3]} {Human: ENSG00000130707, ASS1, argininosuccinate synthase 1, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000076441, Ass1, argininosuccinate synthetase 1, [RH, Score=569, Expect=0.0]} {Dmel: FBgn0026565, CG1315, [RH, Score=458, Expect=2e-160]} {Smed: dd_Smed_v6_3086_0_1, dd_Smed_v6_3086_0_1, [RH, Score=613, Expect=0.0]} {RNA1509_18337, RNA1509_362, RNA1509_49401, RNA1509_59027, RNA1509_665} {RNA1310_6746.1, RNA1509_18337, RNA1509_362, RNA1509_49401, RNA1509_59027, RNA1509_665} {RNA1509_18337, RNA1509_362, RNA1509_49401, RNA1509_59027, RNA1509_665, RNA815_3159.1}

Cumulative graph for MligTC455_47932

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.898 8.017 0.03405 0.46252
RegionR2 0.269 8.017 0.44463 0.83323
RegionR3 -0.168 8.017 0.59480 1.00000
RegionR4 -0.982 8.017 0.00587 0.04115
RegionR5 0.613 8.017 0.03281 0.13835
RegionR6 -0.502 8.017 0.11665 0.62295
RegionR7 -0.053 8.017 0.87159 1.00000
RegionR8 -0.075 8.017 0.83009 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.392 8.017 0.48536 1.00000
RegenerationR2 -0.218 8.017 0.57919 0.90665
RegenerationR3 0.474 8.017 0.23679 0.67092
RegenerationR4 0.548 8.017 0.17737 0.61737
RegenerationR5 -0.067 8.017 0.86631 1.00000
RegenerationR6 0.486 8.017 0.22943 0.57519
RegenerationBL -0.155 8.017 0.67065 1.00000
RegenerationTP 0.574 8.017 0.13220 0.54653


Genes with expression patterns similar to MligTC455_47932

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47932 12050 251.05 Mlig455_037352

Neo: -

Age: logFC(26M/2M)=0.211

 ASS1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_037352 {REF} {Length: 2840} {Pfam: Arginosuccinate synthase [PF00764.21, score=524.0]; Queuosine biosynthesis protein QueC [PF06508.15, score=21.3]} {Human: ENSG00000130707, ASS1, argininosuccinate synthase 1, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000076441, Ass1, argininosuccinate synthetase 1, [RH, Score=569, Expect=0.0]} {Dmel: FBgn0026565, CG1315, [RH, Score=458, Expect=2e-160]} {Smed: dd_Smed_v6_3086_0_1, dd_Smed_v6_3086_0_1, [RH, Score=613, Expect=0.0]} {RNA1509_18337, RNA1509_362, RNA1509_49401, RNA1509_59027, RNA1509_665} {RNA1310_6746.1, RNA1509_18337, RNA1509_362, RNA1509_49401, RNA1509_59027, RNA1509_665} {RNA1509_18337, RNA1509_362, RNA1509_49401, RNA1509_59027, RNA1509_665, RNA815_3159.1}
2. MligTC455_41797 445 9.26 Mlig455_020146

Neo: -

Age: Up-Down-Up

Region-enriched R6: 3.051/0.00071
Region-enriched R3: 2.418/0.02546

 UNC93A 0.969 - - - - 0.969 - Mlig455_020146 {REF} {Length: 2323} {Pfam: Ion channel regulatory protein UNC-93 [PF05978.18, score=26.1]; Major Facilitator Superfamily [PF07690.18, score=25.6]} {Human: ENSG00000112494, UNC93A, unc-93 homolog A, [RH, Score=258, Expect=2e-80]} {Mouse: ENSMUSG00000067049, Unc93a, unc-93 homolog A, [RH, Score=247, Expect=2e-76]; ENSMUSG00000056133, Unc93a2, unc-93 homolog A2, [RH, Score=247, Expect=2e-76]} {Dmel: FBgn0027556, CG4928, [RH, Score=261, Expect=7e-81]} {Celegans: WBGene00006822, unc-93, Putative potassium channel regulatory protein unc-93, [RH, Score=183, Expect=1e-50]} {RNA1509_45744, RNA1509_46991} {RNA1310_13296, RNA1509_45744, RNA1509_46991} {RNA1509_45744, RNA1509_46991, RNA815_13971}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA