M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48021

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48021 1453 30.27 Mlig455_054930

Neo: Int S/G2/M

Age: -

 BEST1 Mlig455_054930 {REF} {Length: 3695} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=171.2]} {Human: ENSG00000167995, BEST1, bestrophin 1, [Score=121, Expect=2e-28]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=91.3, Expect=9e-19]; ENSMUSG00000052819, Best2, bestrophin 2, [Score=88.6, Expect=4e-18]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=191, Expect=4e-52]} {Celegans: WBGene00007204, best-2, Bestrophin homolog 2, [Score=136, Expect=1e-34]} {Smed: dd_Smed_v6_11440_0_1, dd_Smed_v6_11440_0_1, [RH, Score=281, Expect=1e-88]} {RNA1509_37529, RNA1509_40683, RNA1509_7530} {RNA1310_12196.1, RNA1509_37529, RNA1509_40683, RNA1509_7530} {RNA1509_37529, RNA1509_40683, RNA1509_7530, RNA815_2424}

Cumulative graph for MligTC455_48021

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.166 4.953 0.80166 1.00000
RegionR2 0.346 4.953 0.36689 0.76132
RegionR3 -0.086 4.953 0.79547 1.00000
RegionR4 -0.345 4.953 0.36478 0.68798
RegionR5 0.728 4.953 0.01298 0.06994
RegionR6 -0.185 4.953 0.58136 1.00000
RegionR7 -0.365 4.953 0.35846 0.99485
RegionR8 -0.261 4.953 0.56597 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.21 4.953 0.80695 1.00000
RegenerationR2 -0.614 4.953 0.11202 0.52272
RegenerationR3 -0.559 4.953 0.17841 0.61385
RegenerationR4 -0.46 4.953 0.27549 0.72141
RegenerationR5 -0.597 4.953 0.12459 0.52750
RegenerationR6 -0.378 4.953 0.37631 0.71818
RegenerationBL -0.219 4.953 0.61953 0.96240
RegenerationTP 0.019 4.953 0.96754 1.00000


Genes with expression patterns similar to MligTC455_48021

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48021 1453 30.27 Mlig455_054930

Neo: Int S/G2/M

Age: -

 BEST1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_054930 {REF} {Length: 3695} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=171.2]} {Human: ENSG00000167995, BEST1, bestrophin 1, [Score=121, Expect=2e-28]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=91.3, Expect=9e-19]; ENSMUSG00000052819, Best2, bestrophin 2, [Score=88.6, Expect=4e-18]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=191, Expect=4e-52]} {Celegans: WBGene00007204, best-2, Bestrophin homolog 2, [Score=136, Expect=1e-34]} {Smed: dd_Smed_v6_11440_0_1, dd_Smed_v6_11440_0_1, [RH, Score=281, Expect=1e-88]} {RNA1509_37529, RNA1509_40683, RNA1509_7530} {RNA1310_12196.1, RNA1509_37529, RNA1509_40683, RNA1509_7530} {RNA1509_37529, RNA1509_40683, RNA1509_7530, RNA815_2424}
2. MligTC455_23569 117843 2455.05 Mlig455_062147

Neo: -

Age: logFC(26M/2M)=0.198

 FABP3 2.524 - 0.705 - 0.867 0.952 - Mlig455_062147 {REF} {Length: 646} {TRANSSPLICED} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.25, score=81.9]; Lipocalin / cytosolic fatty-acid binding protein family [PF14651.8, score=40.5]} {Human: ENSG00000121769, FABP3, fatty acid binding protein 3, [RH, Score=130, Expect=7e-39]; ENSG00000147588, PMP2, peripheral myelin protein 2, [RH, Score=129, Expect=3e-38]; ENSG00000164434, FABP7, fatty acid binding protein 7, [RH, Score=127, Expect=9e-38]} {Mouse: ENSMUSG00000052468, Pmp2, peripheral myelin protein 2, [RH, Score=128, Expect=3e-38]; ENSMUSG00000028773, Fabp3, fatty acid binding protein 3, muscle and heart, [RH, Score=126, Expect=3e-37]; ENSMUSG00000019874, Fabp7, fatty acid binding protein 7, brain, [RH, Score=125, Expect=3e-37]} {Dmel: FBgn0037913, fabp, fatty acid binding protein, [RH, Score=110, Expect=3e-31]} {Celegans: WBGene00002257, lbp-5, Fatty acid-binding protein homolog 5, [RH, Score=121, Expect=1e-35]} {Smed: dd_Smed_v6_599_0_1, dd_Smed_v6_599_0_1, [RH, Score=121, Expect=1e-35]} {RNA1509_1515, RNA1509_157, RNA1509_1768, RNA1509_456, RNA1509_61} {RNA1310_28923, RNA1509_1515, RNA1509_157, RNA1509_1768, RNA1509_456, RNA1509_61} {RNA1509_1515, RNA1509_157, RNA1509_1768, RNA1509_456, RNA1509_61, RNA815_7257.2}
3. MligTC455_28988 26527 552.65 Mlig455_025218

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=5.957

 1.761 - - - 0.809 0.952 - Mlig455_025218 {REF} {Length: 333} {NoTransDecoderORF} {RNA1509_892} {RNA1310_53106.5} {RNA815_11555.1}
4. MligTC455_45793 1308 27.26 Mlig455_061709

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.207

Region-enriched R4: 1.192/0.00239

 CTTN 0.965 - - - 0.965 - - Mlig455_061709 {REF} {Length: 2568} {TRANSSPLICED} {Pfam: Repeat in HS1/Cortactin [PF02218.17, score=424.5]; Variant SH3 domain [PF14604.8, score=60.0]; SH3 domain [PF00018.30, score=57.8]; Variant SH3 domain [PF07653.19, score=43.4]; TMEM210 family [PF15195.8, score=31.1]} {Human: ENSG00000085733, CTTN, cortactin, [RH, Score=429, Expect=9e-146]} {Mouse: ENSMUSG00000031078, Cttn, cortactin, [RH, Score=435, Expect=3e-148]} {Dmel: FBgn0025865, Cortactin, [RH, Score=319, Expect=4e-103]} {Celegans: WBGene00018367, F42H10.3, LIM and SH3 domain protein F42H10.3, [Score=64.7, Expect=2e-11]} {Smed: dd_Smed_v6_637_0_1, dd_Smed_v6_637_0_1, [RH, Score=399, Expect=5e-137]} {RNA1509_11527, RNA1509_26561, RNA1509_45930} {RNA1310_27115, RNA1509_11527, RNA1509_26561, RNA1509_45930} {RNA1509_11527, RNA1509_26561, RNA1509_45930, RNA815_5537.1}
5. MligTC455_33322 22301 464.6 Mlig455_058828

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.265

 RPS15A 0.964 - - - - 0.964 - Mlig455_058828 {REF} {Length: 586} {TRANSSPLICED} {Pfam: Ribosomal protein S8 [PF00410.21, score=72.9]} {Human: ENSG00000134419, RPS15A, ribosomal protein S15a, [RH, Score=208, Expect=2e-70]} {Mouse: ENSMUSG00000008683, Rps15a, ribosomal protein S15A, [RH, Score=208, Expect=2e-70]} {Dmel: FBgn0010198, RpS15Aa, Ribosomal protein S15Aa, [RH, Score=207, Expect=3e-70]} {Celegans: WBGene00004491, rps-22, Ribosomal Protein, Small subunit, [RH, Score=206, Expect=5e-70]} {Smed: dd_Smed_v6_237_0_1, dd_Smed_v6_237_0_1, [RH, Score=208, Expect=1e-70]} {RNA1509_2774, RNA1509_983} {RNA1310_52640.1, RNA1509_2774, RNA1509_983} {RNA1509_2774, RNA1509_983, RNA815_31214}
6. MligTC455_25897 384 8 Mlig455_052769

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_052769 {REF} {Length: 2908} {RNA1509_13515, RNA1509_27869, RNA1509_45064, RNA1509_56421, RNA1509_59447, RNA1509_9636} {RNA1310_7271.1, RNA1509_13515, RNA1509_27869, RNA1509_45064, RNA1509_56421, RNA1509_59447, RNA1509_9636} {RNA1509_13515, RNA1509_27869, RNA1509_45064, RNA1509_56421, RNA1509_59447, RNA1509_9636, RNA815_6318}
7. MligTC455_26783 939 19.57 Mlig455_050944

Neo: -

Age: Down-Down-Up

 RBCK1 0.95 - - - 0.950 - - Mlig455_050944 {REF} {Length: 2291} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=29.6]; Zn-finger in Ran binding protein and others [PF00641.20, score=25.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.3]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [RH, Score=270, Expect=4e-84]} {Mouse: ENSMUSG00000027466, Rbck1, RanBP-type and C3HC4-type zinc finger containing 1, [RH, Score=273, Expect=4e-85]} {Celegans: WBGene00013270, Y57A10A.31, [Score=71.2, Expect=8e-13]} {Smed: dd_Smed_v6_1293_0_1, dd_Smed_v6_1293_0_1, [RH, Score=272, Expect=6e-86]} {RNA1509_15860, RNA1509_23103, RNA1509_25491, RNA1509_46532, RNA1509_46992} {RNA1310_18951, RNA1509_15860, RNA1509_23103, RNA1509_25491, RNA1509_46532, RNA1509_46992} {RNA1509_15860, RNA1509_23103, RNA1509_25491, RNA1509_46532, RNA1509_46992, RNA815_7754.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA