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Results for MligTC455_48038

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48038 46 0.96 Mlig455_030994

Neo: -

Age: -

 Mlig455_030994 {REF} {Length: 2648} {Pfam: F5/8 type C domain [PF00754.27, score=18.9]} {RNA1509_26806} {RNA1310_28432} {RNA815_8574}

Cumulative graph for MligTC455_48038

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.532 1.048 0.99988 1.00000
RegionR2 1.297 1.048 0.24969 0.62791
RegionR3 -0.863 1.048 0.99989 1.00000
RegionR4 0.648 1.048 0.99983 1.00000
RegionR5 0.6 1.048 0.40211 0.75977
RegionR6 -1.099 1.048 0.99990 1.00000
RegionR7 -0.818 1.048 0.99992 1.00000
RegionR8 -0.297 1.048 0.99992 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.345 1.048 0.99999 1.00000
RegenerationR2 0.725 1.048 0.51805 0.87859
RegenerationR3 2.21 1.048 0.19977 0.63459
RegenerationR4 3.077 1.048 0.04308 0.33436
RegenerationR5 1.936 1.048 0.18603 0.61672
RegenerationR6 3.995 1.048 0.03887 0.24633
RegenerationBL -0.833 1.048 0.99996 1.00000
RegenerationTP 2.23 1.048 0.43503 0.85622


Genes with expression patterns similar to MligTC455_48038

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48038 46 0.96 Mlig455_030994

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_030994 {REF} {Length: 2648} {Pfam: F5/8 type C domain [PF00754.27, score=18.9]} {RNA1509_26806} {RNA1310_28432} {RNA815_8574}
2. MligTC455_23688 98 2.05 Mlig455_009291, Mlig455_011648, Mlig455_011649, Mlig455_011650, Mlig455_011651, Mlig455_011652, Mlig455_030919, Mlig455_049142, Mlig455_062509, Mlig455_067745

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.973

 RTL1, ZCCHC13 0.979 - - - - 0.979 -

Mlig455_009291 {REF} {Length: 4337} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=35.6]; Aspartyl protease [PF13650.8, score=30.5]} {RNA1509_31095} {RNA1310_2124} {RNA815_8382}

Mlig455_011648 {REF} {Length: 393} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.8]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=79.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=79.1]; Integrase zinc binding domain [PF17921.3, score=60.4]; Integrase core domain [PF00665.28, score=42.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.0]; Aspartyl protease [PF13650.8, score=28.7]; Zinc knuckle [PF00098.25, score=24.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=79.3, Expect=4e-14]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=4e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=4e-08]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=233, Expect=6e-63]} {RNA1509_34728} {RNA1310_3657} {RNA815_18924}

Mlig455_011649 {REF} {Length: 514} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=35.2]; Aspartyl protease [PF13650.8, score=30.8]; Zinc knuckle [PF00098.25, score=26.0]} {Human: ENSG00000187969, ZCCHC13, zinc finger CCHC-type containing 13, [Score=48.9, Expect=4e-06]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=121, Expect=3e-28]} {RNA1509_34728} {RNA1310_3657} {RNA815_63204}

Mlig455_011650 {REF} {Length: 674} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.8]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=91.7, Expect=3e-21]} {RNA1509_34728} {RNA1310_3657} {RNA815_25691}

Mlig455_011651 {REF} {Length: 370} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=70.9]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=51.3]} {Smed: dd_Smed_v6_24988_0_1, dd_Smed_v6_24988_0_1, [Score=77.0, Expect=4e-18]} {RNA1509_31095} {RNA1310_2124} {RNA815_34721}

Mlig455_011652 {REF} {Length: 1023} {Pfam: Integrase zinc binding domain [PF17921.3, score=63.8]; Integrase core domain [PF00665.28, score=48.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=34.6]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=71.2, Expect=2e-13]} {RNA1509_34728} {RNA1310_2124} {RNA815_8382}

Mlig455_030919 {REF} {Length: 3647} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=35.2]; Aspartyl protease [PF13650.8, score=30.8]; Zinc knuckle [PF00098.25, score=26.0]} {Human: ENSG00000187969, ZCCHC13, zinc finger CCHC-type containing 13, [Score=48.9, Expect=4e-06]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=121, Expect=3e-28]} {RNA1509_34728} {RNA1310_3657} {RNA815_8382}

Mlig455_049142 {REF} {Length: 4308} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.8]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=79.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=79.1]; Integrase zinc binding domain [PF17921.3, score=60.4]; Integrase core domain [PF00665.28, score=42.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.0]; Aspartyl protease [PF13650.8, score=28.7]; Zinc knuckle [PF00098.25, score=24.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=79.3, Expect=4e-14]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=4e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=4e-08]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=233, Expect=6e-63]} {RNA1509_31095} {RNA1310_2124} {RNA815_8382}

Mlig455_062509 {REF} {Length: 495} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.8]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=79.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=79.1]; Integrase zinc binding domain [PF17921.3, score=60.4]; Integrase core domain [PF00665.28, score=42.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.0]; Aspartyl protease [PF13650.8, score=28.7]; Zinc knuckle [PF00098.25, score=24.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=79.3, Expect=4e-14]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=4e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=4e-08]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=233, Expect=6e-63]} {RNA1509_34728} {RNA1310_3657} {RNA815_8382}

Mlig455_067745 {REF} {Length: 4357} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.8]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=79.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=79.2]; Integrase zinc binding domain [PF17921.3, score=60.4]; Integrase core domain [PF00665.28, score=44.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.1]; Aspartyl protease [PF13650.8, score=28.7]; Zinc knuckle [PF00098.25, score=24.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=79.3, Expect=4e-14]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=5e-08]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=5e-08]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=233, Expect=1e-62]} {RNA1509_31095, RNA1509_34728} {RNA1310_2124, RNA1509_31095, RNA1509_34728} {RNA1509_31095, RNA1509_34728, RNA815_8382}
3. MligTC455_53383 64 1.33 Mlig455_007926

Neo: -

Age: logFC(26M/2M)=0.427

 0.959 - - - - 0.959 - Mlig455_007926 {REF} {Length: 1171} {TRANSSPLICED} {RNA1509_44796} {RNA1310_37940} {RNA815_18215}
4. MligTC455_27167 11 0.22 Mlig455_069607

Neo: -

Age: Up-Down-Up

 0.953 - - - - 0.953 - Mlig455_069607 {REF} {Length: 5782} {RNA1509_9964} {RNA1310_745.1} {RNA815_16.1}
5. MligTC455_04153 49 1.03 Mlig455_067773, Mlig455_067775

Neo: -

Age: Down-Up-Down

 0.95 - - - 0.950 - -

Mlig455_067773 {REF} {Length: 890} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=51.1]} {Smed: dd_Smed_v6_13824_0_1, dd_Smed_v6_13824_0_1, [RH, Score=44.3, Expect=8e-06]} {RNA1310_32645} {RNA815_18926}

Mlig455_067775 {REF} {Length: 1340} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=26.6]} {Smed: dd_Smed_v6_12148_0_2, dd_Smed_v6_12148_0_2, [RH, Score=110, Expect=4e-29]} {RNA1509_47428} {RNA1310_32645} {RNA815_18926}
6. MligTC455_51731 37 0.78 Mlig455_048454, Mlig455_062721

Neo: Germline

Age: -

 0.95 - - - 0.950 - -

Mlig455_048454 {REF} {Length: 2040} {RNA1310_58189}

Mlig455_062721 {REF} {Length: 607} {NoTransDecoderORF} {RNA1310_58189}

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