M. lignano Tomo-Seq
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Results for MligTC455_48343

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48343 5862 122.13 Mlig455_036997

Neo: -

Age: -

Region-enriched R4: 1.242/0.00000

Regeneration-upregulated TP: 1.161

Regeneration-enriched TP: 1.161

 CALM1 Mlig455_036997 {REF} {Length: 1944} {Pfam: EF hand [PF00036.34, score=141.6]; EF-hand domain pair [PF13499.8, score=126.0]; EF-hand domain pair [PF13833.8, score=108.3]; EF-hand domain [PF13405.8, score=98.8]; EF hand [PF13202.8, score=95.4]; EF-hand domain [PF14658.8, score=62.0]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=40.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=31.8]; EF-hand domain [PF08976.13, score=28.9]; Uncharacterised protein family (UPF0154) [PF03672.15, score=23.8]; Ca2+ insensitive EF hand [PF08726.12, score=21.4]; Dockerin type I domain [PF00404.20, score=21.1]; Repeat of unknown function (DUF1103) [PF06513.13, score=19.6]; Tellurite resistance protein TerB [PF05099.15, score=18.9]; Caleosin related protein [PF05042.15, score=18.8]} {Human: ENSG00000198668, CALM1, calmodulin 1, [RH, Score=293, Expect=3e-103]; ENSG00000160014, CALM3, calmodulin 3, [RH, Score=293, Expect=3e-103]; ENSG00000143933, CALM2, calmodulin 2, [RH, Score=293, Expect=3e-103]} {Mouse: ENSMUSG00000019370, Calm3, calmodulin 3, [RH, Score=293, Expect=2e-103]; ENSMUSG00000036438, Calm2, calmodulin 2, [RH, Score=293, Expect=2e-103]; ENSMUSG00000001175, Calm1, calmodulin 1, [RH, Score=293, Expect=2e-103]} {Dmel: FBgn0000253, Cam, Calmodulin, [RH, Score=296, Expect=5e-105]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [RH, Score=297, Expect=2e-105]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [RH, Score=297, Expect=2e-105]} {RNA1509_15468, RNA1509_16801, RNA1509_56327} {RNA1310_18398.1, RNA1509_15468, RNA1509_16801, RNA1509_56327} {RNA1509_15468, RNA1509_16801, RNA1509_56327, RNA815_7150.1}

Cumulative graph for MligTC455_48343

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.678 7.032 0.00058 0.07967
RegionR2 -0.535 7.032 0.01597 0.13380
RegionR3 0.529 7.032 0.00247 0.05813
RegionR4 1.242 7.032 0.00000 0.00000
RegionR5 0.918 7.032 0.00000 0.00000
RegionR6 0.708 7.032 0.00007 0.00568
RegionR7 -0.031 7.032 0.89263 1.00000
RegionR8 -1.154 7.032 0.00035 0.02147

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.557 7.032 0.39994 1.00000
RegenerationR2 0.222 7.032 0.25035 0.69714
RegenerationR3 0.27 7.032 0.16268 0.59706
RegenerationR4 0.028 7.032 0.88861 1.00000
RegenerationR5 0.174 7.032 0.34427 0.76028
RegenerationR6 0.179 7.032 0.35583 0.70080
RegenerationBL 0.583 7.032 0.00630 0.07628
RegenerationTP 1.161 7.032 0.00000 0.00072 Specific for TP: 1.161


Genes with expression patterns similar to MligTC455_48343

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48343 5862 122.13 Mlig455_036997

Neo: -

Age: -

Region-enriched R4: 1.242/0.00000

Regeneration-upregulated TP: 1.161

Regeneration-enriched TP: 1.161

 CALM1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_036997 {REF} {Length: 1944} {Pfam: EF hand [PF00036.34, score=141.6]; EF-hand domain pair [PF13499.8, score=126.0]; EF-hand domain pair [PF13833.8, score=108.3]; EF-hand domain [PF13405.8, score=98.8]; EF hand [PF13202.8, score=95.4]; EF-hand domain [PF14658.8, score=62.0]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=40.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=31.8]; EF-hand domain [PF08976.13, score=28.9]; Uncharacterised protein family (UPF0154) [PF03672.15, score=23.8]; Ca2+ insensitive EF hand [PF08726.12, score=21.4]; Dockerin type I domain [PF00404.20, score=21.1]; Repeat of unknown function (DUF1103) [PF06513.13, score=19.6]; Tellurite resistance protein TerB [PF05099.15, score=18.9]; Caleosin related protein [PF05042.15, score=18.8]} {Human: ENSG00000198668, CALM1, calmodulin 1, [RH, Score=293, Expect=3e-103]; ENSG00000160014, CALM3, calmodulin 3, [RH, Score=293, Expect=3e-103]; ENSG00000143933, CALM2, calmodulin 2, [RH, Score=293, Expect=3e-103]} {Mouse: ENSMUSG00000019370, Calm3, calmodulin 3, [RH, Score=293, Expect=2e-103]; ENSMUSG00000036438, Calm2, calmodulin 2, [RH, Score=293, Expect=2e-103]; ENSMUSG00000001175, Calm1, calmodulin 1, [RH, Score=293, Expect=2e-103]} {Dmel: FBgn0000253, Cam, Calmodulin, [RH, Score=296, Expect=5e-105]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [RH, Score=297, Expect=2e-105]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [RH, Score=297, Expect=2e-105]} {RNA1509_15468, RNA1509_16801, RNA1509_56327} {RNA1310_18398.1, RNA1509_15468, RNA1509_16801, RNA1509_56327} {RNA1509_15468, RNA1509_16801, RNA1509_56327, RNA815_7150.1}
2. MligTC455_51450 512 10.66 Mlig455_041269

Neo: -

Age: -

 TRIP10 1.652 - - 0.702 - 0.950 - Mlig455_041269 {REF} {Length: 5048} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=47.3]; SH3 domain [PF00018.30, score=28.1]} {Human: ENSG00000125733, TRIP10, thyroid hormone receptor interactor 10, [RH, Score=112, Expect=3e-25]} {Mouse: ENSMUSG00000039735, Fnbp1l, formin binding protein 1-like, [Score=116, Expect=1e-26]} {Dmel: FBgn0035533, Cip4, Cdc42-interacting protein 4, [RH, Score=112, Expect=3e-25]} {Celegans: WBGene00017298, toca-1, Transducer of Cdc42-dependent actin assembly protein 1 homolog, [RH, Score=92.4, Expect=4e-19]} {RNA1509_6949} {RNA1310_5138.1} {RNA815_6079}
3. MligTC455_16642 465 9.69 Mlig455_008423

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.873

Region-enriched R4: 5.222/0.00050

 0.95 - - - - - 0.950 Mlig455_008423 {REF} {Length: 1839} {Pfam: Protein of unknown function (DUF1269) [PF06897.14, score=28.9]; Domain of unknown function (DUF6468) [PF20072.1, score=20.6]} {RNA1509_54008} {RNA1310_27027, RNA1509_54008} {RNA1509_54008, RNA815_11743}

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