M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48471

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48471 45 0.94 Mlig455_051251

Neo: -

Age: Up-Down-Down

 NUDT12 Mlig455_051251 {REF} {Length: 2294} {TRANSSPLICED} {Pfam: NUDIX domain [PF00293.30, score=48.1]; NADH pyrophosphatase zinc ribbon domain [PF09297.13, score=21.2]} {Human: ENSG00000112874, NUDT12, nudix hydrolase 12, [RH, Score=169, Expect=4e-48]} {Mouse: ENSMUSG00000024228, Nudt12, nudix (nucleoside diphosphate linked moiety X)-type motif 12, [RH, Score=165, Expect=1e-46]} {Celegans: WBGene00003586, ndx-9, NADH pyrophosphatase, [RH, Score=96.3, Expect=3e-22]} {Smed: dd_Smed_v6_13002_0_1, dd_Smed_v6_13002_0_1, [RH, Score=140, Expect=7e-39]} {RNA1509_13753, RNA1509_52843} {RNA1310_45938, RNA1509_13753} {RNA1509_13753, RNA815_26729}

Cumulative graph for MligTC455_48471

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.482 1.308 0.68079 1.00000
RegionR2 -0.784 1.308 0.99019 1.00000
RegionR3 0.912 1.308 0.43067 0.95094
RegionR4 1.113 1.308 0.46530 0.79303
RegionR5 0.404 1.308 0.69750 1.00000
RegionR6 0.508 1.308 0.67165 1.00000
RegionR7 -0.149 1.308 0.91640 1.00000
RegionR8 0.477 1.308 0.76460 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.644 1.308 0.99986 1.00000
RegenerationR2 2.357 1.308 0.06672 0.42202
RegenerationR3 2.041 1.308 0.05589 0.40549
RegenerationR4 0.99 1.308 0.41482 0.82314
RegenerationR5 1.793 1.308 0.05305 0.37011
RegenerationR6 2.288 1.308 0.04908 0.27716
RegenerationBL 3.14 1.308 0.02970 0.19192
RegenerationTP 0.7 1.308 0.72144 1.00000


Genes with expression patterns similar to MligTC455_48471

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48471 45 0.94 Mlig455_051251

Neo: -

Age: Up-Down-Down

 NUDT12 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_051251 {REF} {Length: 2294} {TRANSSPLICED} {Pfam: NUDIX domain [PF00293.30, score=48.1]; NADH pyrophosphatase zinc ribbon domain [PF09297.13, score=21.2]} {Human: ENSG00000112874, NUDT12, nudix hydrolase 12, [RH, Score=169, Expect=4e-48]} {Mouse: ENSMUSG00000024228, Nudt12, nudix (nucleoside diphosphate linked moiety X)-type motif 12, [RH, Score=165, Expect=1e-46]} {Celegans: WBGene00003586, ndx-9, NADH pyrophosphatase, [RH, Score=96.3, Expect=3e-22]} {Smed: dd_Smed_v6_13002_0_1, dd_Smed_v6_13002_0_1, [RH, Score=140, Expect=7e-39]} {RNA1509_13753, RNA1509_52843} {RNA1310_45938, RNA1509_13753} {RNA1509_13753, RNA815_26729}
2. MligTC455_20164 49 1.02 Mlig455_049842

Neo: -

Age: Up-Down-Up

 TEDC1 0.978 - - - - 0.978 - Mlig455_049842 {REF} {Length: 2341} {TRANSSPLICED} {Pfam: Tubulin epsilon and delta complex protein 1 [PF14970.8, score=140.2]} {Human: ENSG00000185347, TEDC1, tubulin epsilon and delta complex 1, [Score=77.8, Expect=6e-15]} {Mouse: ENSMUSG00000037466, Tedc1, tubulin epsilon and delta complex 1, [Score=59.3, Expect=4e-09]} {Smed: dd_Smed_v6_15829_0_1, dd_Smed_v6_15829_0_1, [Score=69.3, Expect=9e-13]} {RNA1509_27695} {RNA1310_8427.1} {RNA815_8179.1}
3. MligTC455_16832 193 4.01 Mlig455_050408

Neo: -

Age: -

Region-enriched R4: 2.401/0.03173

 0.976 - - - - 0.976 - Mlig455_050408 {REF} {Length: 2464} {RNA1509_56144} {RNA1310_28893.1} {RNA815_39130}
4. MligTC455_04096 8 0.16 Mlig455_014232

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_014232 {REF} {Length: 1653} {RNA1509_51264} {RNA1310_39001} {RNA815_45184}
5. MligTC455_49782 116 2.41 Mlig455_055413

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.547

Regeneration-upregulated BL: 5.364

Regeneration-enriched BL: 5.364

 TAX1BP3 0.97 - - - - 0.970 - Mlig455_055413 {REF} {Length: 1637} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=31.8]; PDZ domain [PF17820.3, score=25.7]; PDZ domain [PF13180.8, score=22.4]} {Human: ENSG00000213977, TAX1BP3, Tax1 binding protein 3, [Score=56.6, Expect=1e-10]} {Mouse: ENSMUSG00000040158, Tax1bp3, Tax1 (human T cell leukemia virus type I) binding protein 3, [Score=56.6, Expect=6e-11]} {Dmel: FBgn0035148, CG3402, [Score=72.0, Expect=5e-17]} {Celegans: WBGene00016678, C45G9.7, [Score=77.8, Expect=2e-19]} {RNA1509_46994} {RNA1310_49427.1} {RNA815_26268.2}
6. MligTC455_30483 50 1.04 Mlig455_036778

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_036778 {REF} {Length: 303} {NoTransDecoderORF} {RNA1310_71532} {RNA815_40310}
7. MligTC455_46560 231 4.82 Mlig455_031727

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.001

 0.963 - - - - 0.963 - Mlig455_031727 {REF} {Length: 2186} {RNA1509_39227} {RNA1310_26502} {RNA815_11026}
8. MligTC455_14692 17 0.35 Mlig455_020320

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_020320 {REF} {Length: 375} {NoTransDecoderORF} {RNA1509_4505} {RNA1310_24535} {RNA815_10675}
9. MligTC455_51388 1745 36.36 Mlig455_005090, Mlig455_005220

Neo: -

Age: -

Regeneration-upregulated BL: 1.430

Regeneration-enriched BL: 1.430

 RNF38 0.951 - - - - 0.951 -

Mlig455_005090 {REF} {Length: 2856} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=50.3]; RING-H2 zinc finger domain [PF12678.9, score=35.5]; RING-like zinc finger [PF17123.7, score=34.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=33.6]; zinc-RING finger domain [PF14634.8, score=29.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.9]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.7]; RING-type zinc-finger [PF13445.8, score=19.5]} {Human: ENSG00000137075, RNF38, ring finger protein 38, [RH, Score=123, Expect=4e-29]; ENSG00000146083, RNF44, ring finger protein 44, [RH, Score=122, Expect=2e-29]} {Mouse: ENSMUSG00000035696, Rnf38, ring finger protein 38, [RH, Score=122, Expect=3e-29]; ENSMUSG00000034928, Rnf44, ring finger protein 44, [RH, Score=122, Expect=5e-30]} {Dmel: FBgn0037705, mura, murashka, [Score=119, Expect=1e-27]} {Celegans: WBGene00023404, plr-1, Probable E3 ubiquitin-protein ligase plr-1, [RH, Score=72.0, Expect=4e-13]} {Smed: dd_Smed_v6_2844_0_1, dd_Smed_v6_2844_0_1, [RH, Score=117, Expect=5e-29]} {RNA1509_45319} {RNA1310_2617.1} {RNA815_12257}

Mlig455_005220 {REF} {Length: 3524} {Pfam: Ring finger domain [PF13639.8, score=50.3]; RING-H2 zinc finger domain [PF12678.9, score=35.4]; RING-like zinc finger [PF17123.7, score=34.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=33.6]; zinc-RING finger domain [PF14634.8, score=29.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.9]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.7]; RING-type zinc-finger [PF13445.8, score=19.5]} {Human: ENSG00000137075, RNF38, ring finger protein 38, [RH, Score=123, Expect=4e-29]; ENSG00000146083, RNF44, ring finger protein 44, [RH, Score=122, Expect=3e-29]} {Mouse: ENSMUSG00000034928, Rnf44, ring finger protein 44, [RH, Score=122, Expect=5e-30]; ENSMUSG00000035696, Rnf38, ring finger protein 38, [RH, Score=122, Expect=3e-29]} {Dmel: FBgn0037705, mura, murashka, [Score=119, Expect=1e-27]} {Celegans: WBGene00023404, plr-1, Probable E3 ubiquitin-protein ligase plr-1, [RH, Score=72.0, Expect=5e-13]} {Smed: dd_Smed_v6_2844_0_1, dd_Smed_v6_2844_0_1, [RH, Score=117, Expect=7e-29]} {RNA1509_15386, RNA1509_45319} {RNA1310_2617.1, RNA1509_15386, RNA1509_45319} {RNA1509_15386, RNA1509_45319, RNA815_12257}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA