M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48605

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48605 340 7.08 Mlig455_025692

Neo: -

Age: -

 Mlig455_025692 {REF} {Length: 3603} {Smed: dd_Smed_v6_12482_0_1, dd_Smed_v6_12482_0_1, [RH, Score=61.2, Expect=8e-11]} {RNA1509_31699, RNA1509_7821} {RNA1310_3967, RNA1509_31699, RNA1509_7821} {RNA1509_31699, RNA1509_7821, RNA815_2321.1}

Cumulative graph for MligTC455_48605

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.225 3.218 0.24081 0.88735
RegionR2 0.916 3.218 0.29815 0.68685
RegionR3 0.915 3.218 0.25013 0.79378
RegionR4 0.358 3.218 0.69139 0.98278
RegionR5 -1.047 3.218 0.98851 1.00000
RegionR6 -0.031 3.218 0.85919 1.00000
RegionR7 1.844 3.218 0.01519 0.22277
RegionR8 2.27 3.218 0.00762 0.16214

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.144 3.218 0.99989 1.00000
RegenerationR2 -0.579 3.218 0.20981 0.65720
RegenerationR3 -0.503 3.218 0.33749 0.76212
RegenerationR4 -0.44 3.218 0.47840 0.85795
RegenerationR5 0.62 3.218 0.29963 0.72668
RegenerationR6 -0.321 3.218 0.59494 0.86607
RegenerationBL -2.129 3.218 0.00500 0.06568
RegenerationTP -0.651 3.218 0.26619 0.71387


Genes with expression patterns similar to MligTC455_48605

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48605 340 7.08 Mlig455_025692

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_025692 {REF} {Length: 3603} {Smed: dd_Smed_v6_12482_0_1, dd_Smed_v6_12482_0_1, [RH, Score=61.2, Expect=8e-11]} {RNA1509_31699, RNA1509_7821} {RNA1310_3967, RNA1509_31699, RNA1509_7821} {RNA1509_31699, RNA1509_7821, RNA815_2321.1}
2. MligTC455_25989 157 3.27 Mlig455_048336

Neo: -

Age: -

 TMEM184B 1.736 0.774 - - - - 0.962 Mlig455_048336 {REF} {Length: 2156} {TRANSSPLICED} {Pfam: Organic solute transporter Ostalpha [PF03619.18, score=289.7]} {Human: ENSG00000198792, TMEM184B, transmembrane protein 184B, [RH, Score=454, Expect=3e-158]} {Mouse: ENSMUSG00000009035, Tmem184b, transmembrane protein 184b, [RH, Score=449, Expect=1e-156]} {Dmel: FBgn0035236, CG12004, [RH, Score=462, Expect=1e-160]} {Celegans: WBGene00009574, F40E10.6, [RH, Score=469, Expect=8e-165]} {Smed: dd_Smed_v6_3881_1_1, dd_Smed_v6_3881_1_1, [RH, Score=457, Expect=1e-160]} {RNA1509_20649} {RNA1310_20202, RNA1509_20649} {RNA1509_20649, RNA815_8572}
3. MligTC455_48186 92 1.91 Mlig455_061090

Neo: -

Age: -

Region-enriched R4: 3.239/0.03988

 1.707 - - - 0.741 - 0.966 Mlig455_061090 {REF} {Length: 735} {NoTransDecoderORF} {RNA1310_40260.1} {RNA815_21503}
4. MligTC455_34819 168 3.5 Mlig455_010505, Mlig455_061873

Neo: -

Age: Up-Down-Down

 QRFPR 1.663 - - - 0.711 - 0.952

Mlig455_010505 {REF} {Length: 4092} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=158.0]; Olfactory receptor [PF13853.8, score=19.8]} {Human: ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [RH, Score=166, Expect=1e-45]} {Mouse: ENSMUSG00000029917, C130060K24Rik, RIKEN cDNA C130060K24 gene, [RH, Score=150, Expect=3e-40]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=137, Expect=2e-34]} {Celegans: WBGene00007635, npr-4, NeuroPeptide Receptor family, [Score=122, Expect=4e-30]} {Smed: dd_Smed_v6_22952_0_1, dd_Smed_v6_22952_0_1, [Score=194, Expect=4e-57]} {RNA1310_26846} {RNA815_28382}

Mlig455_061873 {REF} {Length: 3092} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=131.2]; Olfactory receptor [PF13853.8, score=19.8]} {Human: ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [Score=131, Expect=4e-33]} {Mouse: ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=115, Expect=1e-27]; ENSMUSG00000028004, Npy2r, neuropeptide Y receptor Y2, [Score=112, Expect=4e-27]; ENSMUSG00000020090, Npffr1, neuropeptide FF receptor 1, [Score=112, Expect=1e-26]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=112, Expect=5e-26]} {Celegans: WBGene00016110, npr-11, Putative neuropeptide Y receptor 11, [Score=103, Expect=5e-24]} {Smed: dd_Smed_v6_22952_0_1, dd_Smed_v6_22952_0_1, [Score=162, Expect=4e-45]} {RNA1310_26846} {RNA815_28382}
5. MligTC455_16352 52 1.09 Mlig455_040309, Mlig455_056828

Neo: Int S/G2/M

Age: -

 0.973 - - - - - 0.973

Mlig455_040309 {REF} {Length: 837} {Pfam: PHD-finger [PF00628.31, score=24.1]} {RNA1509_56212} {RNA1310_58657} {RNA815_21345.1}

Mlig455_056828 {REF} {Length: 4083} {Pfam: PHD-finger [PF00628.31, score=20.4]} {RNA1509_56212} {RNA1310_7603} {RNA815_24180}
6. MligTC455_52703 503 10.48 Mlig455_067967

Neo: -

Age: Up-Down-Up

 DSCAM 0.967 0.967 - - - - - Mlig455_067967 {REF} {Length: 7940} {Pfam: Fibronectin type III domain [PF00041.23, score=181.2]; Immunoglobulin domain [PF13927.8, score=132.1]; Immunoglobulin I-set domain [PF07679.18, score=91.0]; Immunoglobulin domain [PF13895.8, score=77.5]; Immunoglobulin domain [PF00047.27, score=62.1]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=49.3]; Immunoglobulin V-set domain [PF07686.19, score=46.5]} {Human: ENSG00000171587, DSCAM, DS cell adhesion molecule, [RH, Score=242, Expect=2e-63]; ENSG00000177103, DSCAML1, DS cell adhesion molecule like 1, [RH, Score=239, Expect=3e-62]} {Mouse: ENSMUSG00000050272, Dscam, DS cell adhesion molecule, [RH, Score=238, Expect=3e-62]; ENSMUSG00000032087, Dscaml1, DS cell adhesion molecule like 1, [RH, Score=238, Expect=2e-62]} {Dmel: FBgn0263219, Dscam4, Down syndrome cell adhesion molecule 4, [Score=221, Expect=4e-57]} {Celegans: WBGene00004215, ptp-3, Tyrosine-protein phosphatase Lar-like, [Score=79.7, Expect=2e-14]} {Smed: dd_Smed_v6_3024_0_1, dd_Smed_v6_3024_0_1, [RH, Score=330, Expect=1e-90]} {RNA1509_2497} {RNA1310_1699.1} {RNA815_16029}
7. MligTC455_06013 40 0.84 Mlig455_068436

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_068436 {REF} {Length: 578} {RNA1310_1398} {RNA815_9443}
8. MligTC455_44442 1201 25.03 Mlig455_003131

Neo: -

Age: logFC(26M/2M)=-0.363

 0.958 - 0.958 - - - - Mlig455_003131 {REF} {Length: 1831} {RNA1509_26624, RNA1509_27545, RNA1509_31759, RNA1509_3524, RNA1509_42258, RNA1509_44854} {RNA1310_10649.1, RNA1509_26624, RNA1509_27545, RNA1509_31759, RNA1509_42258, RNA1509_44854} {RNA1509_26624, RNA1509_27545, RNA1509_31759, RNA1509_42258, RNA1509_44854, RNA815_4791.2}
9. MligTC455_22453 308 6.42 Mlig455_002760, Mlig455_063360

Neo: -

Age: -

Region-enriched R7: 1.998/0.00091

 RHBDL2 0.952 - - - - - 0.952

Mlig455_002760 {REF} {Length: 340} {NoTransDecoderORF} {RNA1310_79323} {RNA815_51519}

Mlig455_063360 {REF} {Length: 4019} {Pfam: Rhomboid family [PF01694.24, score=76.7]} {Human: ENSG00000158315, RHBDL2, rhomboid like 2, [Score=111, Expect=1e-26]} {Mouse: ENSMUSG00000043333, Rhbdl2, rhomboid like 2, [Score=117, Expect=8e-29]} {Dmel: FBgn0020248, stet, stem cell tumor, [Score=128, Expect=1e-31]} {Celegans: WBGene00004400, rom-1, Rhomboid-related protein 1, [Score=96.3, Expect=2e-21]} {Smed: dd_Smed_v6_13835_0_1, dd_Smed_v6_13835_0_1, [Score=207, Expect=4e-61]} {RNA1509_50956} {RNA1310_32207} {RNA815_21281}
10. MligTC455_33842 492 10.26 Mlig455_004899

Neo: -

Age: -

Region-enriched R2: 2.178/0.01972

 CDKL1 0.95 0.950 - - - - - Mlig455_004899 {REF} {Length: 2500} {Pfam: Protein kinase domain [PF00069.27, score=247.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=116.6]; Haspin like kinase domain [PF12330.10, score=18.7]; ABC1 atypical kinase-like domain [PF03109.18, score=18.6]} {Human: ENSG00000100490, CDKL1, cyclin dependent kinase like 1, [RH, Score=429, Expect=3e-150]; ENSG00000205111, CDKL4, cyclin dependent kinase like 4, [RH, Score=422, Expect=2e-148]} {Mouse: ENSMUSG00000020990, Cdkl1, cyclin-dependent kinase-like 1 (CDC2-related kinase), [RH, Score=432, Expect=7e-152]; ENSMUSG00000033966, Cdkl4, cyclin-dependent kinase-like 4, [RH, Score=423, Expect=3e-148]} {Dmel: FBgn0031730, CG7236, [RH, Score=381, Expect=6e-131]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [RH, Score=396, Expect=4e-136]} {Smed: dd_Smed_v6_9353_0_1, dd_Smed_v6_9353_0_1, [RH, Score=481, Expect=5e-171]} {RNA1509_19679} {RNA1310_6686.1} {RNA815_5397}
11. MligTC455_37269 173 3.61 Mlig455_020047

Neo: -

Age: -

 CASP3 0.95 - - - - - 0.950 Mlig455_020047 {REF} {Length: 2828} {Pfam: Caspase domain [PF00656.24, score=94.7]; Ankyrin repeats (3 copies) [PF12796.9, score=79.1]; Ankyrin repeats (many copies) [PF13857.8, score=62.0]; Ankyrin repeats (many copies) [PF13637.8, score=58.0]; Ankyrin repeat [PF13606.8, score=40.7]; Ankyrin repeat [PF00023.32, score=31.7]} {Human: ENSG00000164305, CASP3, caspase 3, [Score=111, Expect=1e-26]; ENSG00000003400, CASP10, caspase 10, [Score=107, Expect=9e-24]} {Mouse: ENSMUSG00000031628, Casp3, caspase 3, [Score=106, Expect=5e-25]; ENSMUSG00000025076, Casp7, caspase 7, [Score=106, Expect=7e-25]} {Dmel: FBgn0010501, Dcp-1, Death caspase-1, [Score=96.3, Expect=2e-21]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=81.6, Expect=9e-17]} {Smed: dd_Smed_v6_10883_0_1, dd_Smed_v6_10883_0_1, [Score=107, Expect=1e-24]} {RNA1509_54818} {RNA1310_7187} {RNA815_8712}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA