M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48613

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48613 1353 28.19 Mlig455_043680

Neo: -

Age: Down-Down-Up

 Mlig455_043680 {REF} {Length: 897} {RNA1509_18459} {RNA1310_80028, RNA1509_18459} {RNA1509_18459, RNA815_47743.1}

Cumulative graph for MligTC455_48613

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.459 5.103 0.12475 0.71918
RegionR2 0.539 5.103 0.24377 0.62006
RegionR3 0.453 5.103 0.22063 0.76260
RegionR4 -0.283 5.103 0.51389 0.83967
RegionR5 -0.459 5.103 0.20648 0.50030
RegionR6 0.228 5.103 0.53934 1.00000
RegionR7 0.581 5.103 0.14204 0.70376
RegionR8 0.401 5.103 0.40433 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.006 5.103 0.19639 0.93585
RegenerationR2 0.423 5.103 0.30638 0.74690
RegenerationR3 0.863 5.103 0.05437 0.40079
RegenerationR4 0.79 5.103 0.08566 0.46108
RegenerationR5 0.676 5.103 0.12856 0.53321
RegenerationR6 0.007 5.103 0.98617 1.00000
RegenerationBL 0.048 5.103 0.91681 1.00000
RegenerationTP 0.611 5.103 0.20228 0.64391


Genes with expression patterns similar to MligTC455_48613

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48613 1353 28.19 Mlig455_043680

Neo: -

Age: Down-Down-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_043680 {REF} {Length: 897} {RNA1509_18459} {RNA1310_80028, RNA1509_18459} {RNA1509_18459, RNA815_47743.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA