M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48900

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48900 165 3.43 Mlig455_035257

Neo: -

Age: -

 POLRMT Mlig455_035257 {REF} {Length: 4069} {TRANSSPLICED} {Pfam: DNA-dependent RNA polymerase [PF00940.21, score=454.6]} {Human: ENSG00000099821, POLRMT, RNA polymerase mitochondrial, [RH, Score=530, Expect=2e-168]} {Mouse: ENSMUSG00000020329, Polrmt, polymerase (RNA) mitochondrial (DNA directed), [RH, Score=523, Expect=3e-167]} {Dmel: FBgn0261938, mtRNApol, mitochondrial RNA polymerase, [RH, Score=535, Expect=2e-169]} {Celegans: WBGene00013680, rpom-1, DNA-directed RNA polymerase, [RH, Score=432, Expect=4e-133]} {Smed: dd_Smed_v6_5515_0_1, dd_Smed_v6_5515_0_1, [RH, Score=515, Expect=2e-164]} {RNA1509_13294} {RNA1310_3023, RNA1509_13294} {RNA1509_13294, RNA815_8554}

Cumulative graph for MligTC455_48900

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.167 2.548 0.57612 1.00000
RegionR2 0.833 2.548 0.29811 0.68685
RegionR3 -0.261 2.548 0.66739 1.00000
RegionR4 -0.14 2.548 0.86907 1.00000
RegionR5 0.528 2.548 0.29611 0.63011
RegionR6 0.555 2.548 0.34649 0.93200
RegionR7 -0.206 2.548 0.81462 1.00000
RegionR8 -0.142 2.548 0.89390 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.722 2.548 0.67384 1.00000
RegenerationR2 -0.671 2.548 0.31388 0.75344
RegenerationR3 0.279 2.548 0.70040 0.94763
RegenerationR4 -0.378 2.548 0.62175 0.92121
RegenerationR5 -0.655 2.548 0.29670 0.72427
RegenerationR6 -3.863 2.548 0.00087 0.03192
RegenerationBL -0.317 2.548 0.79788 1.00000
RegenerationTP 0.289 2.548 0.78323 1.00000


Genes with expression patterns similar to MligTC455_48900

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48900 165 3.43 Mlig455_035257

Neo: -

Age: -

 POLRMT 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_035257 {REF} {Length: 4069} {TRANSSPLICED} {Pfam: DNA-dependent RNA polymerase [PF00940.21, score=454.6]} {Human: ENSG00000099821, POLRMT, RNA polymerase mitochondrial, [RH, Score=530, Expect=2e-168]} {Mouse: ENSMUSG00000020329, Polrmt, polymerase (RNA) mitochondrial (DNA directed), [RH, Score=523, Expect=3e-167]} {Dmel: FBgn0261938, mtRNApol, mitochondrial RNA polymerase, [RH, Score=535, Expect=2e-169]} {Celegans: WBGene00013680, rpom-1, DNA-directed RNA polymerase, [RH, Score=432, Expect=4e-133]} {Smed: dd_Smed_v6_5515_0_1, dd_Smed_v6_5515_0_1, [RH, Score=515, Expect=2e-164]} {RNA1509_13294} {RNA1310_3023, RNA1509_13294} {RNA1509_13294, RNA815_8554}
2. MligTC455_48899 248 5.16 Mlig455_035208

Neo: -

Age: -

 POLRMT 3.412 - 0.980 0.889 0.841 0.702 - Mlig455_035208 {REF} {Length: 3027} {Pfam: DNA-dependent RNA polymerase [PF00940.21, score=456.2]} {Human: ENSG00000099821, POLRMT, RNA polymerase mitochondrial, [RH, Score=528, Expect=9e-172]} {Mouse: ENSMUSG00000020329, Polrmt, polymerase (RNA) mitochondrial (DNA directed), [RH, Score=521, Expect=1e-170]} {Dmel: FBgn0261938, mtRNApol, mitochondrial RNA polymerase, [RH, Score=533, Expect=7e-173]} {Celegans: WBGene00013680, rpom-1, DNA-directed RNA polymerase, [RH, Score=429, Expect=9e-136]} {Smed: dd_Smed_v6_5515_0_1, dd_Smed_v6_5515_0_1, [RH, Score=514, Expect=8e-168]} {RNA1509_13294} {RNA1310_3023} {RNA815_8554}
3. MligTC455_28796 121 2.53 Mlig455_000324, Mlig455_013478, Mlig455_013479, Mlig455_020608, Mlig455_044509

Neo: -

Age: -

 1.704 - - 0.950 - - 0.754

Mlig455_000324 {REF} {Length: 1035} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=38.7]; Integrase zinc binding domain [PF17921.3, score=35.8]; H2C2 zinc finger [PF09337.12, score=19.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=49.7, Expect=2e-06]} {RNA1509_50200} {RNA1310_832} {RNA815_31737}

Mlig455_013478 {REF} {Length: 907} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=38.7]; Integrase zinc binding domain [PF17921.3, score=35.8]; H2C2 zinc finger [PF09337.12, score=19.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=49.7, Expect=2e-06]} {RNA1310_832} {RNA815_31737}

Mlig455_013479 {REF} {Length: 1374} {NoTransDecoderORF} {RNA1509_53012} {RNA1310_64055} {RNA815_9365}

Mlig455_020608 {REF} {Length: 12424} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.6]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=74.7, Expect=6e-14]} {RNA1509_53012} {RNA1310_832} {RNA815_19380}

Mlig455_044509 {REF} {Length: 12424} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.9]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=74.7, Expect=7e-14]} {RNA1509_53012} {RNA1310_832, RNA1509_53012} {RNA1509_53012, RNA815_19380}
4. MligTC455_40661 365 7.61 Mlig455_034164, Mlig455_040386

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.360

Region-enriched R4: 3.330/0.00442

 1.675 - - 0.722 - 0.953 -

Mlig455_034164 {REF} {Length: 711} {TRANSSPLICED} {RNA1509_28209} {RNA1310_26691} {RNA815_14595}

Mlig455_040386 {REF} {Length: 710} {TRANSSPLICED} {RNA1509_28209} {RNA1310_26691} {RNA815_14595}
5. MligTC455_29813 477 9.93 Mlig455_042152, Mlig455_065878

Neo: -

Age: -

Region-enriched R2: 2.484/0.00328

 0.963 - - - 0.963 - -

Mlig455_042152 {REF} {Length: 1773} {TRANSSPLICED} {RNA1509_42770} {RNA1310_21173} {RNA815_23517}

Mlig455_065878 {REF} {Length: 1731} {TRANSSPLICED} {RNA1509_42770} {RNA1310_21173, RNA1509_42770} {RNA1509_42770, RNA815_23517}
6. MligTC455_36977 113 2.36 Mlig455_035675, Mlig455_035771, Mlig455_035772, Mlig455_035774, Mlig455_035880, Mlig455_035885

Neo: -

Age: Up-Down-Down

 KIF1A 0.953 - - 0.953 - - -

Mlig455_035675 {REF} {Length: 7705} {Pfam: Kinesin motor domain [PF00225.25, score=358.7]; Kinesin-associated [PF16183.7, score=185.4]; Kinesin protein [PF12473.10, score=123.2]; Microtubule binding [PF16796.7, score=74.3]; Kinesin protein 1B [PF12423.10, score=41.4]; PH domain [PF00169.31, score=40.0]; FHA domain [PF00498.28, score=30.6]; Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=22.8]} {Human: ENSG00000130294, KIF1A, kinesin family member 1A, [RH, Score=1638, Expect=0.0]} {Mouse: ENSMUSG00000014602, Kif1a, kinesin family member 1A, [RH, Score=1635, Expect=0.0]} {Dmel: FBgn0267002, unc-104, uncoordinated-104, [RH, Score=1515, Expect=0.0]} {Celegans: WBGene00006831, unc-104, Kinesin-like protein unc-104, [RH, Score=1374, Expect=0.0]} {Smed: dd_Smed_v6_7108_0_2, dd_Smed_v6_7108_0_2, [RH, Score=1588, Expect=0.0]} {RNA1509_46150} {RNA1310_1231} {RNA815_1937.1}

Mlig455_035771 {REF} {Length: 3339} {Pfam: Kinesin protein [PF12473.10, score=123.6]; Kinesin protein 1B [PF12423.10, score=42.1]; PH domain [PF00169.31, score=39.6]} {Human: ENSG00000130294, KIF1A, kinesin family member 1A, [Score=660, Expect=0.0]; ENSG00000054523, KIF1B, kinesin family member 1B, [Score=627, Expect=0.0]} {Mouse: ENSMUSG00000014602, Kif1a, kinesin family member 1A, [Score=657, Expect=0.0]} {Dmel: FBgn0267002, unc-104, uncoordinated-104, [Score=506, Expect=1e-157]} {Celegans: WBGene00006831, unc-104, Kinesin-like protein unc-104, [Score=449, Expect=3e-137]} {Smed: dd_Smed_v6_7108_0_1, dd_Smed_v6_7108_0_1, [Score=660, Expect=0.0]} {RNA1509_58310} {RNA1310_857.1} {RNA815_3511}

Mlig455_035772 {REF} {Length: 603} {Pfam: Kinesin motor domain [PF00225.25, score=358.7]; Kinesin-associated [PF16183.7, score=185.4]; Kinesin protein [PF12473.10, score=123.2]; Microtubule binding [PF16796.7, score=74.3]; Kinesin protein 1B [PF12423.10, score=41.4]; PH domain [PF00169.31, score=40.0]; FHA domain [PF00498.28, score=30.6]; Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=22.8]} {Human: ENSG00000130294, KIF1A, kinesin family member 1A, [RH, Score=1638, Expect=0.0]} {Mouse: ENSMUSG00000014602, Kif1a, kinesin family member 1A, [RH, Score=1635, Expect=0.0]} {Dmel: FBgn0267002, unc-104, uncoordinated-104, [RH, Score=1515, Expect=0.0]} {Celegans: WBGene00006831, unc-104, Kinesin-like protein unc-104, [RH, Score=1374, Expect=0.0]} {Smed: dd_Smed_v6_7108_0_2, dd_Smed_v6_7108_0_2, [RH, Score=1588, Expect=0.0]} {RNA1509_58310} {RNA1310_5764} {RNA815_1937.1}

Mlig455_035774 {REF} {Length: 1155} {Pfam: Kinesin motor domain [PF00225.25, score=209.6]; Microtubule binding [PF16796.7, score=78.8]} {Human: ENSG00000130294, KIF1A, kinesin family member 1A, [Score=356, Expect=5e-122]; ENSG00000054523, KIF1B, kinesin family member 1B, [Score=352, Expect=4e-113]; ENSG00000129250, KIF1C, kinesin family member 1C, [Score=340, Expect=4e-109]} {Mouse: ENSMUSG00000014602, Kif1a, kinesin family member 1A, [Score=352, Expect=2e-111]; ENSMUSG00000063077, Kif1b, kinesin family member 1B, [Score=349, Expect=3e-112]; ENSMUSG00000020821, Kif1c, kinesin family member 1C, [Score=342, Expect=8e-117]} {Dmel: FBgn0267002, unc-104, uncoordinated-104, [Score=340, Expect=2e-107]} {Celegans: WBGene00006831, unc-104, Kinesin-like protein unc-104, [Score=317, Expect=3e-99]} {Smed: dd_Smed_v6_7108_0_1, dd_Smed_v6_7108_0_1, [Score=324, Expect=1e-101]} {RNA1509_46150} {RNA1310_1231} {RNA815_1937.2}

Mlig455_035880 {REF} {Length: 3595} {Pfam: Kinesin protein [PF12473.10, score=91.6]; Kinesin protein 1B [PF12423.10, score=42.7]} {Human: ENSG00000130294, KIF1A, kinesin family member 1A, [Score=432, Expect=4e-133]} {Mouse: ENSMUSG00000014602, Kif1a, kinesin family member 1A, [Score=431, Expect=7e-133]} {Dmel: FBgn0267002, unc-104, uncoordinated-104, [Score=418, Expect=1e-128]} {Celegans: WBGene00006831, unc-104, Kinesin-like protein unc-104, [Score=372, Expect=2e-112]} {Smed: dd_Smed_v6_7108_0_2, dd_Smed_v6_7108_0_2, [Score=436, Expect=1e-134]} {RNA1509_58310} {RNA1310_857.2} {RNA815_3511}

Mlig455_035885 {REF} {Length: 1073} {Pfam: Kinesin motor domain [PF00225.25, score=209.6]; Microtubule binding [PF16796.7, score=78.8]} {Human: ENSG00000130294, KIF1A, kinesin family member 1A, [Score=356, Expect=5e-122]; ENSG00000054523, KIF1B, kinesin family member 1B, [Score=352, Expect=4e-113]; ENSG00000129250, KIF1C, kinesin family member 1C, [Score=340, Expect=4e-109]} {Mouse: ENSMUSG00000014602, Kif1a, kinesin family member 1A, [Score=352, Expect=2e-111]; ENSMUSG00000063077, Kif1b, kinesin family member 1B, [Score=349, Expect=3e-112]; ENSMUSG00000020821, Kif1c, kinesin family member 1C, [Score=342, Expect=8e-117]} {Dmel: FBgn0267002, unc-104, uncoordinated-104, [Score=340, Expect=2e-107]} {Celegans: WBGene00006831, unc-104, Kinesin-like protein unc-104, [Score=317, Expect=3e-99]} {Smed: dd_Smed_v6_7108_0_1, dd_Smed_v6_7108_0_1, [Score=324, Expect=1e-101]} {RNA1509_46150} {RNA1310_1231} {RNA815_1937.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA