M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49092

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49092 66 1.38 Mlig455_047645

Neo: -

Age: logFC(26M/2M)=0.476

 SPTSSA Mlig455_047645 {REF} {Length: 1400} {TRANSSPLICED} {Pfam: Small subunit of serine palmitoyltransferase-like [PF11779.10, score=55.2]} {Human: ENSG00000165389, SPTSSA, serine palmitoyltransferase small subunit A, [RH, Score=60.8, Expect=1e-13]} {Mouse: ENSMUSG00000044408, Sptssa, serine palmitoyltransferase, small subunit A, [RH, Score=60.5, Expect=2e-13]} {Smed: dd_Smed_v6_10999_0_1, dd_Smed_v6_10999_0_1, [RH, Score=44.3, Expect=1e-07]} {RNA1509_25198, RNA1509_44209, RNA1509_45841, RNA1509_56517, RNA1509_56609} {RNA1310_81057, RNA1509_25198, RNA1509_44209, RNA1509_45841, RNA1509_56517, RNA1509_56609} {RNA1509_25198, RNA1509_44209, RNA1509_45841, RNA1509_56517, RNA1509_56609, RNA815_32896}

Cumulative graph for MligTC455_49092

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.687 1.715 1.00000 1.00000
RegionR2 1.195 1.715 0.41487 0.80804
RegionR3 1.027 1.715 0.39982 0.92814
RegionR4 2.544 1.715 0.10127 0.31000
RegionR5 0.478 1.715 0.58124 0.93978
RegionR6 -0.306 1.715 0.83212 1.00000
RegionR7 -4.171 1.715 1.00000 1.00000
RegionR8 0.921 1.715 0.56272 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.005 1.715 0.99986 1.00000
RegenerationR2 -0.866 1.715 0.35486 0.78509
RegenerationR3 -1.166 1.715 0.30598 0.73685
RegenerationR4 -1.536 1.715 0.18374 0.62492
RegenerationR5 -0.148 1.715 0.85446 1.00000
RegenerationR6 -0.402 1.715 0.72883 0.94065
RegenerationBL 2.416 1.715 0.15458 0.47030
RegenerationTP 1.587 1.715 0.43077 0.85326


Genes with expression patterns similar to MligTC455_49092

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49092 66 1.38 Mlig455_047645

Neo: -

Age: logFC(26M/2M)=0.476

 SPTSSA 5 1.000 1.000 1.000 - 1.000 1.000 Mlig455_047645 {REF} {Length: 1400} {TRANSSPLICED} {Pfam: Small subunit of serine palmitoyltransferase-like [PF11779.10, score=55.2]} {Human: ENSG00000165389, SPTSSA, serine palmitoyltransferase small subunit A, [RH, Score=60.8, Expect=1e-13]} {Mouse: ENSMUSG00000044408, Sptssa, serine palmitoyltransferase, small subunit A, [RH, Score=60.5, Expect=2e-13]} {Smed: dd_Smed_v6_10999_0_1, dd_Smed_v6_10999_0_1, [RH, Score=44.3, Expect=1e-07]} {RNA1509_25198, RNA1509_44209, RNA1509_45841, RNA1509_56517, RNA1509_56609} {RNA1310_81057, RNA1509_25198, RNA1509_44209, RNA1509_45841, RNA1509_56517, RNA1509_56609} {RNA1509_25198, RNA1509_44209, RNA1509_45841, RNA1509_56517, RNA1509_56609, RNA815_32896}
2. MligTC455_31492 185 3.85 Mlig455_051757

Neo: -

Age: Up-Down-Down

 EXOC7 1.735 - - - - 0.967 0.768 Mlig455_051757 {REF} {Length: 4204} {Pfam: Exo70 exocyst complex subunit [PF03081.17, score=223.8]} {Human: ENSG00000182473, EXOC7, exocyst complex component 7, [Score=174, Expect=2e-45]} {Mouse: ENSMUSG00000020792, Exoc7, exocyst complex component 7, [Score=171, Expect=1e-44]} {Dmel: FBgn0266667, Exo70, Exocyst 70, [RH, Score=165, Expect=1e-42]} {Celegans: WBGene00016606, exoc-7, EXOCyst component, [Score=61.6, Expect=1e-09]} {Smed: dd_Smed_v6_7926_0_1, dd_Smed_v6_7926_0_1, [Score=137, Expect=1e-33]} {RNA1509_8287} {RNA1310_2547.1} {RNA815_8292}
3. MligTC455_37838 40 0.83 Mlig455_012885

Neo: -

Age: Up-Down-Down

 PKDREJ 0.981 - - 0.981 - - - Mlig455_012885 {REF} {Length: 13341} {Pfam: Polycystin cation channel [PF08016.14, score=221.2]; REJ domain [PF02010.17, score=52.8]; PLAT/LH2 domain [PF01477.25, score=27.5]} {Human: ENSG00000130943, PKDREJ, polycystin family receptor for egg jelly, [Score=184, Expect=7e-46]} {Mouse: ENSMUSG00000052496, Pkdrej, polycystin (PKD) family receptor for egg jelly, [Score=186, Expect=7e-47]; ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=178, Expect=3e-44]} {Dmel: FBgn0041195, Pkd2, Polycystic kidney disease 2, [Score=110, Expect=6e-24]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=121, Expect=3e-27]} {Smed: dd_Smed_v6_15525_0_2, dd_Smed_v6_15525_0_2, [Score=260, Expect=1e-69]} {RNA1509_38015} {RNA1310_23208, RNA1509_38015} {RNA1509_38015, RNA815_31966}
4. MligTC455_34618 106 2.21 Mlig455_033707

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.746

 CFAP157 0.97 - - 0.970 - - - Mlig455_033707 {REF} {Length: 4009} {TRANSSPLICED} {Human: ENSG00000160401, CFAP157, cilia and flagella associated protein 157, [Score=150, Expect=4e-39]} {Mouse: ENSMUSG00000038987, Cfap157, cilia and flagella associated protein 157, [Score=156, Expect=3e-41]} {Dmel: FBgn0036962, CG17122, [RH, Score=97.4, Expect=5e-21]} {Smed: dd_Smed_v6_9862_0_1, dd_Smed_v6_9862_0_1, [RH, Score=243, Expect=1e-74]} {RNA1509_22637, RNA1509_25705, RNA1509_45693} {RNA1310_16735.3, RNA1509_22637, RNA1509_45693} {RNA1509_22637, RNA1509_45693, RNA815_10155}
5. MligTC455_19205 77 1.6 Mlig455_005130

Neo: Irradiation

Age: -

 TIMELESS 0.962 - - - - 0.962 - Mlig455_005130 {REF} {Length: 5329} {TRANSSPLICED} {Pfam: Timeless protein [PF04821.16, score=144.6]} {Human: ENSG00000111602, TIMELESS, timeless circadian regulator, [RH, Score=326, Expect=5e-92]} {Mouse: ENSMUSG00000039994, Timeless, timeless circadian clock 1, [RH, Score=317, Expect=3e-89]} {Dmel: FBgn0038118, timeout, [RH, Score=246, Expect=6e-66]} {Celegans: WBGene00006571, tim-1, Protein timeless homolog, [RH, Score=145, Expect=8e-35]} {Smed: dd_Smed_v6_19257_0_2, dd_Smed_v6_19257_0_2, [RH, Score=233, Expect=6e-64]} {RNA1509_18295, RNA1509_48783} {RNA1310_1716.1, RNA1509_18295, RNA1509_48783} {RNA1509_18295, RNA1509_48783, RNA815_12908}
6. MligTC455_35586 172 3.59 Mlig455_008537, Mlig455_026282, Mlig455_036632, Mlig455_036708

Neo: -

Age: -

 0.962 - - 0.962 - - -

Mlig455_008537 {REF} {Length: 2379} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=24.0]; Aspartyl protease [PF13650.8, score=20.6]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}

Mlig455_026282 {REF} {Length: 2920} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=23.9]; Aspartyl protease [PF13650.8, score=20.6]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}

Mlig455_036632 {REF} {Length: 2822} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=22.4]; Aspartyl protease [PF13650.8, score=19.8]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}

Mlig455_036708 {REF} {Length: 2900} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=26.4]; Aspartyl protease [PF13650.8, score=23.2]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}
7. MligTC455_53861 286 5.95 Mlig455_028801

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_028801 {REF} {Length: 1486} {Smed: dd_Smed_v6_5631_0_1, dd_Smed_v6_5631_0_1, [Score=54.7, Expect=5e-08]} {RNA1310_25486.1} {RNA815_31068}
8. MligTC455_28340 55 1.14 Mlig455_034493, Mlig455_038767, Mlig455_066245

Neo: -

Age: Up-Down-Up

Region-enriched R2: 4.182/0.03406

 CHRNB3, PCDH9 0.959 - - 0.959 - - -

Mlig455_034493 {REF} {Length: 1601} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=158.8]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=91.2]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=204, Expect=4e-59]; ENSG00000117971, CHRNB4, cholinergic receptor nicotinic beta 4 subunit, [Score=202, Expect=4e-58]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=195, Expect=1e-55]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=194, Expect=2e-55]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=194, Expect=3e-54]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=206, Expect=5e-60]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=200, Expect=2e-57]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=190, Expect=8e-54]} {Celegans: WBGene00000050, acr-11, AcetylCholine Receptor, [Score=185, Expect=1e-52]} {Smed: dd_Smed_v6_10322_0_1, dd_Smed_v6_10322_0_1, [Score=370, Expect=4e-122]} {RNA1509_55679} {RNA1310_29798} {RNA815_45190}

Mlig455_038767 {REF} {Length: 4472} {Pfam: Cadherin domain [PF00028.19, score=325.9]; Cadherin-like [PF16184.7, score=44.8]; Cadherin-like [PF08266.14, score=40.4]} {Human: ENSG00000184226, PCDH9, protocadherin 9, [RH, Score=339, Expect=1e-98]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [RH, Score=335, Expect=2e-97]} {Dmel: FBgn0024836, stan, starry night, [Score=248, Expect=4e-67]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=214, Expect=3e-56]} {Smed: dd_Smed_v6_11633_0_1, dd_Smed_v6_11633_0_1, [RH, Score=355, Expect=2e-105]} {RNA1509_51596} {RNA1310_4295, RNA1509_51596} {RNA1509_51596, RNA815_10391}

Mlig455_066245 {REF} {Length: 3076} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=159.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=105.6]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=208, Expect=1e-60]; ENSG00000117971, CHRNB4, cholinergic receptor nicotinic beta 4 subunit, [Score=207, Expect=4e-60]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=202, Expect=4e-57]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=202, Expect=2e-58]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=199, Expect=3e-57]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=198, Expect=1e-56]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=210, Expect=2e-61]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=206, Expect=1e-59]; ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=201, Expect=2e-56]; ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=201, Expect=4e-58]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=201, Expect=9e-58]} {Celegans: WBGene00000050, acr-11, AcetylCholine Receptor, [Score=187, Expect=3e-53]} {Smed: dd_Smed_v6_10322_0_1, dd_Smed_v6_10322_0_1, [RH, Score=424, Expect=6e-143]} {RNA1509_55679} {RNA1310_29798, RNA1509_55679} {RNA1509_55679, RNA815_45190}
9. MligTC455_14026 38 0.8 Mlig455_023627

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_023627 {REF} {Length: 1475} {Pfam: Flagellar-associated PapD-like [PF14874.8, score=30.1]; CS domain [PF04969.18, score=27.0]} {RNA1509_6357} {RNA1310_134529} {RNA815_1252}
10. MligTC455_23131 76 1.58 Mlig455_060529

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_060529 {REF} {Length: 2115} {Pfam: F5/8 type C domain [PF00754.27, score=35.9]; PAN domain [PF00024.28, score=24.6]} {RNA1509_56926} {RNA1310_33845.2} {RNA815_3664.1}
11. MligTC455_02657 31 0.65 Mlig455_062192

Neo: -

Age: -

 0.955 - - 0.955 - - - Mlig455_062192 {REF} {Length: 860} {Pfam: Keratin, high sulfur B2 protein [PF01500.19, score=27.8]} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=166, Expect=2e-46]}
12. MligTC455_30231 346 7.21 Mlig455_045544, Mlig455_052638, Mlig455_065708

Neo: -

Age: Up-Down-Up

 BOLL 0.955 - - 0.955 - - -

Mlig455_045544 {REF} {Length: 1980} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.0]; RNA recognition motif [PF16367.7, score=19.1]} {Human: ENSG00000152430, BOLL, boule homolog, RNA binding protein, [Score=100, Expect=1e-24]} {Mouse: ENSMUSG00000025977, Boll, boule homolog, RNA binding protein, [RH, Score=99.4, Expect=7e-26]} {Dmel: FBgn0011206, bol, boule, [Score=94.7, Expect=1e-23]} {Celegans: WBGene00000935, daz-1, DAZ protein 1, [Score=87.8, Expect=1e-19]} {Smed: dd_Smed_v6_10611_0_2, dd_Smed_v6_10611_0_2, [Score=104, Expect=7e-28]} {RNA1310_26111} {RNA815_42271}

Mlig455_052638 {REF} {Length: 7042} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.0]; RNA recognition motif [PF16367.7, score=19.1]} {Human: ENSG00000152430, BOLL, boule homolog, RNA binding protein, [Score=100, Expect=1e-24]} {Mouse: ENSMUSG00000025977, Boll, boule homolog, RNA binding protein, [RH, Score=99.4, Expect=7e-26]} {Dmel: FBgn0011206, bol, boule, [Score=94.7, Expect=1e-23]} {Celegans: WBGene00000935, daz-1, DAZ protein 1, [Score=87.8, Expect=1e-19]} {Smed: dd_Smed_v6_10611_0_2, dd_Smed_v6_10611_0_2, [Score=104, Expect=7e-28]} {RNA1509_26340} {RNA1310_26111} {RNA815_2054.1}

Mlig455_065708 {REF} {Length: 1990} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.0]; RNA recognition motif [PF16367.7, score=19.1]} {Human: ENSG00000152430, BOLL, boule homolog, RNA binding protein, [Score=100, Expect=2e-24]} {Mouse: ENSMUSG00000025977, Boll, boule homolog, RNA binding protein, [RH, Score=99.4, Expect=7e-26]} {Dmel: FBgn0011206, bol, boule, [Score=94.4, Expect=2e-23]} {Celegans: WBGene00000935, daz-1, DAZ protein 1, [Score=90.9, Expect=1e-20]} {Smed: dd_Smed_v6_10611_0_1, dd_Smed_v6_10611_0_1, [RH, Score=104, Expect=6e-28]} {RNA1310_26111} {RNA815_42271}
13. MligTC455_49993 152 3.17 Mlig455_068971

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.374

 0.954 - - - - 0.954 - Mlig455_068971 {REF} {Length: 4440} {TRANSSPLICED} {RNA1509_46549, RNA1509_53939} {RNA1310_6208.1, RNA1509_46549, RNA1509_53939} {RNA1509_46549, RNA1509_53939, RNA815_18742}
14. MligTC455_29937 75 1.55 Mlig455_053384

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_053384 {REF} {Length: 3610} {NoTransDecoderORF} {RNA1509_57191} {RNA1310_45092} {RNA815_10095.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA