M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49139

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49139 1369 28.53 Mlig455_011134

Neo: -

Age: logFC(26M/2M)=0.267

Region-enriched R5: 1.037/0.00024

 GRINA Mlig455_011134 {REF} {Length: 1407} {TRANSSPLICED} {Pfam: Inhibitor of apoptosis-promoting Bax1 [PF01027.22, score=157.9]} {Human: ENSG00000178719, GRINA, glutamate ionotropic receptor NMDA type subunit associated protein 1, [Score=209, Expect=1e-65]; ENSG00000135472, FAIM2, Fas apoptotic inhibitory molecule 2, [Score=203, Expect=1e-64]} {Mouse: ENSMUSG00000014529, Tmbim7, transmembrane BAX inhibitor motif containing 7, [Score=207, Expect=5e-66]; ENSMUSG00000022564, Grina, glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding), [Score=199, Expect=2e-62]} {Dmel: FBgn0013305, Nmda1, N-methyl-D-aspartate receptor-associated protein, [Score=251, Expect=4e-83]} {Celegans: WBGene00006470, tag-120, [Score=169, Expect=3e-52]} {Smed: dd_Smed_v6_16271_0_2, dd_Smed_v6_16271_0_2, [Score=236, Expect=2e-77]} {RNA1509_16877, RNA1509_40615, RNA1509_53594} {RNA1310_24071.1, RNA1509_16877, RNA1509_40615, RNA1509_53594} {RNA1509_16877, RNA1509_40615, RNA1509_53594, RNA815_18201}

Cumulative graph for MligTC455_49139

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.954 5.105 0.26003 0.90818
RegionR2 -0.187 5.105 0.58649 0.94098
RegionR3 0.169 5.105 0.53454 1.00000
RegionR4 0.602 5.105 0.05219 0.19846
RegionR5 1.037 5.105 0.00001 0.00024
RegionR6 0.33 5.105 0.23059 0.81436
RegionR7 -0.178 5.105 0.63169 1.00000
RegionR8 -0.82 5.105 0.10162 0.59715

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.452 5.105 0.35673 1.00000
RegenerationR2 -0.287 5.105 0.30414 0.74469
RegenerationR3 -0.373 5.105 0.21219 0.64785
RegenerationR4 -0.382 5.105 0.20170 0.64798
RegenerationR5 -0.398 5.105 0.13147 0.53816
RegenerationR6 0.271 5.105 0.35464 0.69978
RegenerationBL 0.206 5.105 0.57594 0.92913
RegenerationTP 0.309 5.105 0.46597 0.87796


Genes with expression patterns similar to MligTC455_49139

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49139 1369 28.53 Mlig455_011134

Neo: -

Age: logFC(26M/2M)=0.267

Region-enriched R5: 1.037/0.00024

 GRINA 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_011134 {REF} {Length: 1407} {TRANSSPLICED} {Pfam: Inhibitor of apoptosis-promoting Bax1 [PF01027.22, score=157.9]} {Human: ENSG00000178719, GRINA, glutamate ionotropic receptor NMDA type subunit associated protein 1, [Score=209, Expect=1e-65]; ENSG00000135472, FAIM2, Fas apoptotic inhibitory molecule 2, [Score=203, Expect=1e-64]} {Mouse: ENSMUSG00000014529, Tmbim7, transmembrane BAX inhibitor motif containing 7, [Score=207, Expect=5e-66]; ENSMUSG00000022564, Grina, glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding), [Score=199, Expect=2e-62]} {Dmel: FBgn0013305, Nmda1, N-methyl-D-aspartate receptor-associated protein, [Score=251, Expect=4e-83]} {Celegans: WBGene00006470, tag-120, [Score=169, Expect=3e-52]} {Smed: dd_Smed_v6_16271_0_2, dd_Smed_v6_16271_0_2, [Score=236, Expect=2e-77]} {RNA1509_16877, RNA1509_40615, RNA1509_53594} {RNA1310_24071.1, RNA1509_16877, RNA1509_40615, RNA1509_53594} {RNA1509_16877, RNA1509_40615, RNA1509_53594, RNA815_18201}
2. MligTC455_34142 1955 40.74 Mlig455_058610, Mlig455_058700

Neo: -

Age: -

 FUT6 0.966 - - - - 0.966 -

Mlig455_058610 {REF} {Length: 3664} {TRANSSPLICED} {Pfam: Glycosyltransferase family 10 (fucosyltransferase) C-term [PF00852.21, score=192.6]; Fucosyltransferase, N-terminal [PF17039.7, score=66.1]} {Human: ENSG00000156413, FUT6, fucosyltransferase 6, [RH, Score=158, Expect=2e-43]; ENSG00000130383, FUT5, fucosyltransferase 5, [RH, Score=153, Expect=1e-41]} {Mouse: ENSMUSG00000036587, Fut7, fucosyltransferase 7, [RH, Score=144, Expect=4e-38]; ENSMUSG00000049307, Fut4, fucosyltransferase 4, [RH, Score=140, Expect=2e-36]} {Dmel: FBgn0036485, FucTA, [RH, Score=343, Expect=3e-113]} {Celegans: WBGene00001505, fut-1, Alpha-(1,3)-fucosyltransferase fut-1, [RH, Score=149, Expect=8e-40]} {Smed: dd_Smed_v6_14363_0_1, dd_Smed_v6_14363_0_1, [RH, Score=394, Expect=1e-133]} {RNA1509_27530, RNA1509_37298, RNA1509_9062} {RNA1310_17190.1, RNA1509_27530, RNA1509_37298} {RNA1509_27530, RNA1509_37298, RNA815_6685}

Mlig455_058700 {REF} {Length: 3382} {TRANSSPLICED} {Pfam: Glycosyltransferase family 10 (fucosyltransferase) C-term [PF00852.21, score=192.6]; Fucosyltransferase, N-terminal [PF17039.7, score=66.1]} {Human: ENSG00000156413, FUT6, fucosyltransferase 6, [RH, Score=158, Expect=2e-43]; ENSG00000130383, FUT5, fucosyltransferase 5, [RH, Score=153, Expect=1e-41]} {Mouse: ENSMUSG00000036587, Fut7, fucosyltransferase 7, [RH, Score=144, Expect=4e-38]; ENSMUSG00000049307, Fut4, fucosyltransferase 4, [RH, Score=140, Expect=2e-36]} {Dmel: FBgn0036485, FucTA, [RH, Score=343, Expect=3e-113]} {Celegans: WBGene00001505, fut-1, Alpha-(1,3)-fucosyltransferase fut-1, [RH, Score=149, Expect=8e-40]} {Smed: dd_Smed_v6_14363_0_1, dd_Smed_v6_14363_0_1, [RH, Score=394, Expect=1e-133]} {RNA1509_9062} {RNA1310_17190.1, RNA1509_9062} {RNA1509_9062, RNA815_6685}
3. MligTC455_53805 1284 26.75 Mlig455_011870, Mlig455_011895

Neo: -

Age: -

Region-enriched R5: 1.036/0.01799

 0.96 - - - 0.960 - -

Mlig455_011870 {REF} {Length: 1151} {TRANSSPLICED} {RNA1509_50774} {RNA1310_25225} {RNA815_13554}

Mlig455_011895 {REF} {Length: 1128} {RNA1509_50774} {RNA1310_25225} {RNA815_13554}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA