TomoSeq data search

Data search

Results for MligTC455_49181

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49181

1521

31.69

Mlig455_008914

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=2.365

Region-enriched R4: 1.042/0.04120

GPT2

Mlig455_008914 {REF} {Length: 2401} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=98.1]} {Human: ENSG00000166123, GPT2, glutamic--pyruvic transaminase 2, [Score=553, Expect=0.0]; ENSG00000167701, GPT, glutamic--pyruvic transaminase, [Score=544, Expect=0.0]} {Mouse: ENSMUSG00000022546, Gpt, glutamic pyruvic transaminase, soluble, [Score=560, Expect=0.0]; ENSMUSG00000031700, Gpt2, glutamic pyruvate transaminase (alanine aminotransferase) 2, [Score=544, Expect=0.0]} {Dmel: FBgn0030478, CG1640, [RH, Score=550, Expect=0.0]} {Celegans: WBGene00016333, C32F10.8, [Score=498, Expect=5e-174]} {Smed: dd_Smed_v6_2988_0_1, dd_Smed_v6_2988_0_1, [Score=583, Expect=0.0]} {RNA1509_1046} {RNA1310_11434.1} {RNA815_4934.1}

Cumulative graph for MligTC455_49181

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.2	5.171	0.84722	1.00000
RegionR2	-0.293	5.171	0.46368	0.85056
RegionR3	0.022	5.171	0.94399	1.00000
RegionR4	1.042	5.171	0.00588	0.04120
RegionR5	0.138	5.171	0.65585	1.00000
RegionR6	0.149	5.171	0.65758	1.00000
RegionR7	-0.87	5.171	0.08761	0.56797
RegionR8	0.012	5.171	0.98421	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.888	5.171	0.44555	1.00000
RegenerationR2	0.51	5.171	0.10439	0.50924
RegenerationR3	0.726	5.171	0.03741	0.34089
RegenerationR4	0.508	5.171	0.14335	0.56780
RegenerationR5	0.988	5.171	0.00276	0.09296
RegenerationR6	0.775	5.171	0.02616	0.20251
RegenerationBL	0.856	5.171	0.03257	0.20244
RegenerationTP	0.008	5.171	0.98513	1.00000

Genes with expression patterns similar to MligTC455_49181

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49181	1521	31.69	Mlig455_008914	Neo: - Age: Up-Up-Down, logFC(26M/2M)=2.365 Region-enriched R4: 1.042/0.04120	GPT2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_008914 {REF} {Length: 2401} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=98.1]} {Human: ENSG00000166123, GPT2, glutamic--pyruvic transaminase 2, [Score=553, Expect=0.0]; ENSG00000167701, GPT, glutamic--pyruvic transaminase, [Score=544, Expect=0.0]} {Mouse: ENSMUSG00000022546, Gpt, glutamic pyruvic transaminase, soluble, [Score=560, Expect=0.0]; ENSMUSG00000031700, Gpt2, glutamic pyruvate transaminase (alanine aminotransferase) 2, [Score=544, Expect=0.0]} {Dmel: FBgn0030478, CG1640, [RH, Score=550, Expect=0.0]} {Celegans: WBGene00016333, C32F10.8, [Score=498, Expect=5e-174]} {Smed: dd_Smed_v6_2988_0_1, dd_Smed_v6_2988_0_1, [Score=583, Expect=0.0]} {RNA1509_1046} {RNA1310_11434.1} {RNA815_4934.1}
2.	MligTC455_49183	1732	36.09	Mlig455_009009	Neo: - Age: logFC(26M/2M)=-0.445	GPT2	2.554	-	-	-	0.780	0.816	0.958	Mlig455_009009 {REF} {Length: 1993} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=108.1]} {Human: ENSG00000166123, GPT2, glutamic--pyruvic transaminase 2, [RH, Score=593, Expect=0.0]; ENSG00000167701, GPT, glutamic--pyruvic transaminase, [RH, Score=578, Expect=0.0]} {Mouse: ENSMUSG00000022546, Gpt, glutamic pyruvic transaminase, soluble, [RH, Score=595, Expect=0.0]; ENSMUSG00000031700, Gpt2, glutamic pyruvate transaminase (alanine aminotransferase) 2, [RH, Score=585, Expect=0.0]} {Dmel: FBgn0030478, CG1640, [RH, Score=570, Expect=0.0]} {Celegans: WBGene00016333, C32F10.8, [RH, Score=526, Expect=0.0]} {Smed: dd_Smed_v6_2988_0_1, dd_Smed_v6_2988_0_1, [RH, Score=623, Expect=0.0]} {RNA1509_1046} {RNA1310_11434.1} {RNA815_4934.1}
3.	MligTC455_22782	905	18.85	Mlig455_055160	Neo: - Age: logFC(26M/2M)=-0.285	KIF13A	1.683	-	-	-	0.731	-	0.952	Mlig455_055160 {REF} {Length: 6481} {Pfam: Kinesin motor domain [PF00225.25, score=263.7]; Kinesin-associated [PF16183.7, score=86.8]; CAP-Gly domain [PF01302.27, score=81.3]; Kinesin protein [PF12473.10, score=62.8]; Kinesin protein 1B [PF12423.10, score=25.6]; FHA domain [PF00498.28, score=25.3]; Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=19.8]} {Human: ENSG00000137177, KIF13A, kinesin family member 13A, [Score=1072, Expect=0.0]; ENSG00000197892, KIF13B, kinesin family member 13B, [Score=1035, Expect=0.0]} {Mouse: ENSMUSG00000021375, Kif13a, kinesin family member 13A, [Score=1056, Expect=0.0]; ENSMUSG00000060012, Kif13b, kinesin family member 13B, [Score=1025, Expect=0.0]} {Dmel: FBgn0019968, Khc-73, Kinesin heavy chain 73, [Score=1107, Expect=0.0]} {Celegans: WBGene00002217, klp-4, Kinesin-like protein, [Score=920, Expect=0.0]} {Smed: dd_Smed_v6_7089_0_1, dd_Smed_v6_7089_0_1, [Score=877, Expect=0.0]} {RNA1509_5948} {RNA1310_476.1} {RNA815_1117}
4.	MligTC455_40147	1483	30.89	Mlig455_051335, Mlig455_068603	Neo: - Age: - Region-enriched R3: 1.297/0.03059	BBOX1	1.682	0.731	-	-	-	-	0.951	Mlig455_051335 {REF} {Length: 2284} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=127.5]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=52.9]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [Score=207, Expect=5e-62]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [Score=209, Expect=6e-63]} {Dmel: FBgn0030575, CG5321, [Score=219, Expect=1e-66]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [Score=186, Expect=8e-54]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [RH, Score=82.8, Expect=1e-17]} {RNA1509_39411} {RNA1310_11782.2} {RNA815_4372} Mlig455_068603 {REF} {Length: 3563} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=127.3]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=54.4]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [Score=209, Expect=1e-62]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [Score=210, Expect=2e-63]} {Dmel: FBgn0030575, CG5321, [Score=219, Expect=1e-66]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [RH, Score=189, Expect=4e-55]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [RH, Score=82.4, Expect=1e-17]} {RNA1509_39411, RNA1509_9945} {RNA1310_11782.2, RNA1509_39411, RNA1509_9945} {RNA1509_39411, RNA1509_9945, RNA815_4372}
5.	MligTC455_39925	1605	33.44	Mlig455_040142	Neo: - Age: - Region-enriched R4: 1.550/0.00050		1.661	-	0.701	-	-	-	0.960	Mlig455_040142 {REF} {Length: 1049} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1757) [PF08560.12, score=152.5]} {Smed: dd_Smed_v6_7699_0_1, dd_Smed_v6_7699_0_1, [Score=108, Expect=3e-30]} {RNA1509_24812, RNA1509_38244} {RNA1310_35424, RNA1509_24812, RNA1509_38244} {RNA1509_24812, RNA1509_38244, RNA815_15167.2}
6.	MligTC455_38009	2904	60.49	Mlig455_003013, Mlig455_003209, Mlig455_003306	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_003013 {REF} {Length: 904} {TRANSSPLICED} {Pfam: MAPEG family [PF01124.20, score=31.7]} {RNA1509_18212} {RNA1310_38542} {RNA815_13521.1} Mlig455_003209 {REF} {Length: 903} {TRANSSPLICED} {Pfam: MAPEG family [PF01124.20, score=30.0]} {RNA1509_18212} {RNA1310_38542} {RNA815_13521.1} Mlig455_003306 {REF} {Length: 903} {TRANSSPLICED} {Pfam: MAPEG family [PF01124.20, score=30.0]} {RNA1509_18212, RNA1509_22272, RNA1509_34812, RNA1509_39766} {RNA1310_38542, RNA1509_18212, RNA1509_22272, RNA1509_34812, RNA1509_39766} {RNA1509_18212, RNA1509_22272, RNA1509_34812, RNA1509_39766, RNA815_13521.1}
7.	MligTC455_16393	230	4.8	Mlig455_029409	Neo: - Age: -		0.95	-	-	-	-	-	0.950	Mlig455_029409 {REF} {Length: 964} {RNA1310_53453} {RNA815_8249}

Berezikov Lab - 2020-2021 © ERIBA